Tang012818.1
Basic Information
- Insect
- Tetragonisca angustula
- Gene Symbol
- -
- Assembly
- GCA_036937485.2
- Location
- JAWNGG010000129.1:384950-388684[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.032 3.1 8.9 0.1 1 20 92 111 92 113 0.94 2 19 0.0069 0.67 11.0 1.8 1 21 130 150 130 151 0.97 3 19 0.00041 0.04 14.8 3.0 2 23 190 211 189 211 0.94 4 19 0.00091 0.089 13.7 2.9 1 23 215 237 215 237 0.97 5 19 0.0002 0.019 15.8 0.6 3 23 245 265 244 265 0.97 6 19 1.8e-05 0.0018 19.1 4.5 2 23 272 293 271 293 0.96 7 19 0.12 12 7.0 2.5 1 19 302 324 302 326 0.73 8 19 0.044 4.2 8.4 0.1 3 23 332 351 331 351 0.97 9 19 0.52 50 5.1 2.3 3 13 359 369 358 372 0.89 10 19 0.06 5.8 8.0 2.2 1 23 457 479 457 479 0.97 11 19 8.6e-06 0.00084 20.1 0.3 2 23 490 512 489 512 0.95 12 19 0.00016 0.016 16.1 4.9 1 23 518 540 518 540 0.98 13 19 0.04 3.9 8.6 0.4 1 23 544 566 544 566 0.97 14 19 5e-06 0.00049 20.8 1.5 3 23 574 594 572 594 0.97 15 19 1.4e-05 0.0014 19.4 0.2 1 23 600 622 600 622 0.98 16 19 0.089 8.7 7.5 0.9 1 23 628 650 628 650 0.97 17 19 9.9e-06 0.00096 19.9 0.1 2 23 657 678 656 678 0.97 18 19 3.9e-07 3.8e-05 24.3 1.0 1 23 684 706 684 706 0.98 19 19 1.4e-07 1.3e-05 25.8 1.9 1 23 712 734 712 734 0.99
Sequence Information
- Coding Sequence
- ATGTCATTTATCCGAACGATCGCTCGAAGAAATCTGCTCTTACGAATCATTGATCGCAGTCTGACTGGCTTTGTGCACGTCCTCGTTCCGTGCGTGCAGGCGTCCAACTTCAAGGCAGCTCACGCTCTGTTGTCTTTTTGCAGACCGGAAAGCGTGAAGACGATAGCACCCAAGCGGAATCAGTCTCGCGCCACTGAATCGTCCAACGAGGAAGATCGATCGTTTGTCGTTgtcaacgaaataaataacaccTGCGTCGTCCAGGCGATATCGCATCGATGCGAGTCCTGCGATGAGCAGTTCGATACGGAGGCTGCTCTGTTGGTTCACCGAACCGAGCGGTCGATCCTTCGAACTCGCGAGGCGCTGAGAAAACCGGGAAGAAGGTACACGTGCGACGAGTGCTGCGAGAGTTTCGCGAAGAAAGTACAGCTGTTCAAACATCGACGAGGCCGGTGCAAGGGATCGGCCACGGCTGACAGTAAACAGCACAAACCGAAGGATAAAGCGACGAAGACGAAAAAACGGAAGGACCAACAGGAGGCTGCTGCTTCTGGCGACCCGATAGAATGTAACGTGTGTCACAAGAtttttaagaagaagaagtatcTGAATGTTCACAAAACGTTGCACGGGGCGCCGCACATTTGTCACGTGTGCAACGCCAAACTGTCTTCCGAATATTACCTGAAGATTCACATTAGGCGACACAACAAGGAGTTCACTGAATTCTGCGATGTGTGCAACAAGGGGTTTTACTTGAAGGCGACTCTGAAAACGCACATGAGCGTGCACAGTGACGATAAACCTTGCACCTGCGACATCTGTCATAAATCGTTCGGAAACAGGGTCTATCTGAGAAGTCACATGAAGATTCACAGCAAACCGGAGAGCCGGAGAAAGTACAGATGCGAGATCTGCGGGTTCGAGACTTTCTACAGTTACTGTTACAAGGAACACTTGTGGACGCACACGGGGGAGAATCAGGTGGCCTGCGAGGTCTGCGGTAAATTAGTTAGGAGAGAGTACATGAAAATCCACATTAGGATACATACCGGCGAGAAACCGGAGATCTGTGAATTTTGCGGGAAGGCATTTAGCTCAAGAAAGTGTCAGGAGATCGACGCCGAGGAACCAAAAATAGAACAAATGGAAACGCTCGAGGATATGGAACTGGTGAAGTATGAGAGTGATATATGCACGGTCGAGGAGTTCGAACAGATTAGCCACCAAGAAATAATAACTGACACGTTGGGAGAGAGTCAAGACAACATGGACATAAAGGTGTCCCTCCAGGACGAAGAACTGTCAGTGAACTCTAATAAAGTTTTCACCAAGAAATACGAGAGCAGAAAATGCTCGATCGTGTACGAATGCGACGTTTGTAACAAGAGAATGCGTAAGAGGCTTCAATTCCTCAAGCACAGGCAGGACCACGAGAGGAATGACGAGGAGGCTGGAATGGATCGTTGCGAGGAATGTGACAGAAGTTTCACGGACGAGGAGAAGCTGAGAAAGCACGTGATCAAGGTGCATCAGAAGGAGAAACCGTTCCAATGCGTTCTCTGCAACAAATGCTTCAAAACGGAGGAATTCTTGAAGACACACCTGAAGCAGCACAACAAACGTTTCACCTGCGATATTTGCGGTATCTCGAAGGTATCCGGCTACGATCTTCGTTTgcataaaaagaaacacaacGAGGAGTACGTGACGCATTGCGAGATCTGCGGCAAGGGCTTCTACACGAATCAAACTCTGGAGAGACACTTGCTCACTCATACTGGCGAGAAGCCATTCGTATGCAAGGTGTGCAACACCCCATACGCGAGCGCCGCTTATCTGAACACGCACATGAAGTCCCAcggcgaacgagagaaacacaaatgcaatatttgcaatttcgagAGCTACTGGAAAGCGGCCCTGAAGGTACACCTTAAGATCCACACGGGCGAGAATTTGATTACATGCGAGATCTGCGGGAAATTGGTGTCGAGTAAGGCTTACCTGCAGATCCACATGCGTATACACTCTGGCGAGAAACCGCATGTCTGCGAAATATGCGGCAAATCTTTCAGCGTTCGAAAATATCTGGTTGTACACTTGAGAACGCATACAGGCGAAAGGCCGTACGAGTGTAAGGTATGCCAGAAGAGGTTTACGCAGCAGGGTTCGTTGAATTCGCACATGAAGTCGCataacgaacgaaaatga
- Protein Sequence
- MSFIRTIARRNLLLRIIDRSLTGFVHVLVPCVQASNFKAAHALLSFCRPESVKTIAPKRNQSRATESSNEEDRSFVVVNEINNTCVVQAISHRCESCDEQFDTEAALLVHRTERSILRTREALRKPGRRYTCDECCESFAKKVQLFKHRRGRCKGSATADSKQHKPKDKATKTKKRKDQQEAAASGDPIECNVCHKIFKKKKYLNVHKTLHGAPHICHVCNAKLSSEYYLKIHIRRHNKEFTEFCDVCNKGFYLKATLKTHMSVHSDDKPCTCDICHKSFGNRVYLRSHMKIHSKPESRRKYRCEICGFETFYSYCYKEHLWTHTGENQVACEVCGKLVRREYMKIHIRIHTGEKPEICEFCGKAFSSRKCQEIDAEEPKIEQMETLEDMELVKYESDICTVEEFEQISHQEIITDTLGESQDNMDIKVSLQDEELSVNSNKVFTKKYESRKCSIVYECDVCNKRMRKRLQFLKHRQDHERNDEEAGMDRCEECDRSFTDEEKLRKHVIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKLVSSKAYLQIHMRIHSGEKPHVCEICGKSFSVRKYLVVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_00983104; iTF_01418477; iTF_01420398;
- 80% Identity
- -