Mbic003949.1
Basic Information
- Insect
- Melipona bicolor
- Gene Symbol
- -
- Assembly
- GCA_030673865.1
- Location
- JAHYIQ010000002.1:9279879-9283675[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0092 1 10.5 0.1 1 20 130 149 130 151 0.94 2 19 0.004 0.44 11.7 1.7 1 21 168 188 168 189 0.97 3 19 0.00015 0.016 16.2 3.0 2 23 225 246 224 246 0.94 4 19 0.0002 0.022 15.8 2.9 1 23 250 272 250 272 0.97 5 19 4.7e-05 0.0052 17.7 0.5 3 23 280 300 279 300 0.97 6 19 2e-05 0.0022 18.9 3.7 2 23 307 328 306 328 0.96 7 19 1.6 1.8e+02 3.5 4.6 1 19 337 359 337 361 0.73 8 19 0.073 8 7.7 0.1 3 23 367 386 366 386 0.96 9 19 0.46 51 5.2 2.6 3 14 394 405 393 407 0.90 10 19 0.022 2.5 9.3 2.3 1 23 492 514 492 514 0.97 11 19 2.2e-05 0.0024 18.8 0.2 2 23 525 547 524 547 0.95 12 19 0.00016 0.018 16.0 4.9 1 23 553 575 553 575 0.98 13 19 0.04 4.5 8.5 0.4 1 23 579 601 579 601 0.97 14 19 5.1e-06 0.00056 20.8 1.5 3 23 609 629 607 629 0.97 15 19 1.5e-05 0.0016 19.3 0.2 1 23 635 657 635 657 0.98 16 19 0.091 10 7.4 0.9 1 23 663 685 663 685 0.97 17 19 1e-05 0.0011 19.8 0.1 2 23 692 713 691 713 0.97 18 19 7.8e-07 8.6e-05 23.3 0.6 1 23 719 741 719 741 0.98 19 19 1.4e-07 1.5e-05 25.7 1.9 1 23 747 769 747 769 0.99
Sequence Information
- Coding Sequence
- ATGgttagaaaatttctaacgGCGATACGAGAATTACCTGGGACTGAGAAACTCAAGGTCTTCAACGTCGTCTCGCATGGCTATGTGCACTTTGTGCAACGTGTCCATGAAACAATTCTCTGTCCCATGTTATTTATTCGAACGATTGCTCGAAGAAATCTGCTCTTACGAATCATTGATCGCAGTCTGACTGGCTTTGTGCACGTCCCCGTTCCGTTCGTGCAAGCGTCCAACATCAAGGCAGCTCACGCTTTGTTGTCTTTTTGCAGACTGAAAGCGATAGCACTCTGGAATCAGTCTCACGCCGCTGAATCGTTCAACGAGGAAGATCGATCGTTTGTCGTTgtcaacgaaataaataacaccTACGTCGTCCAGGAGATATCGCATCGATGCGAGTCCTGTGGTGAACAATTCGACACGGAGGCTGATCTGTTGGTTCACAGAACCGAGCGATCGATCCTTCGAACTCGCGAGATACTGAGAAAATCGGGAAGAAAGTACACGTGCGACGAGTGCTGCGAGAGTTTCGCGAAGAAAGCACAGCTGTTCAAACATCGACGAGGCCGGTGCAAAAGATCGGCCACGACTGACAGTAAACAGTGCGAAGACAAAGcgatgaaaacaaaaaaacagaaaaaccAACAGGCTGCTGTTTCTGCCGACCCGATAGAATGTAACGTGTGTCACAAGGttttcaagaagaagaagtatcTGAATGTTCACAAAACGTTGCACGGGGCGCCGCACATTTGTCACATGTGTGGCATCAAACTGACCTCCGAATATTACCTCAAGATTCACATTAGGAGACACAACAAGGAGTTCACTGAATTCTGCGAGGTGTGTAACAAAGGATTTTACTTGAAGGCGAATCTGAAAACGCACATGAGCGTGCACAGTGACGCTAAACCGTGCATCTGTGACATTTGTCATAAATCGTTCGGCAACAGAGTCTATCTGAGAAGTCACATGAAGATTCATAGCAAACCGGAGAACAGGAGAAAGTACAGATGCCATATCTGCGAGTTCGAGACTTTCTACAGTTACTGTTACAAGGAGCACTTGTGGACGCACACGGGAGAAAGTCAGGTGGCCTGCGAGGTCTGCGGCAAATTAATTAGGAAAGAGTACATGAAGATCCACATTAGGATACACACTGGCGAGAAGCCGGAGATCTGCGAATTTTGCGGGAAGGCATTTAGCTCAAAAAAGTGTCAGGAGATCGACGCCGAGGAACCAAAAATAGAGCAAATGGAAACGCTCGAGGATATGGAACTGGTGAAGTATGAGAGTGATATGTGCACAGTCGAGGAGTTCGAACAGATTAGTCACCAAGAAATAATAACTGACACGTTGGAAGAAAGTCAGGACAACATGGACATAAAGGTGTCCCTTCAGGACGAAGAACTGTCAGTGAACGCTAATAAAGTTTTCACTAAGAAATACGAGAGCAGAAAATGCTCGATCGTGTACGAATGCGACATTTGTAACAAGAGAATGCGCAAGAAGCTTCAATTCCTGAAGCACAGGCAGGATCACGAGAGGAATGAGGAGGAAGCTGGAATGGATCGTTGCGAGGAATGTGACAGAAGTTTCGCGGACGAGGAGAAGCTGAGAAAGCACGTGATCAAGGTGCATCAGAAGGAGAAACCGTTCCAATGCGTTCTCTGCAACAAATGCTTCAAAACGGAGGAATTCTTGAAGACACACCTGAAGCAGCACAACAAACGTTTCACGTGCGATATTTGCGGGATCTCGAAGGTATCCGGCTACGATCTTCGTTTgcataaaaagaaacacaacGAGGAGTACGTGACGCATTGCGAGATCTGCGGCAAAGGCTTCTACACGAACCAAACTCTGGAGAGACACTTGCTCACTCACACTGGCGAGAAGCCGTTCGTCTGCAAGGTGTGCAACACTCCATACGCGAGCGCCGCTTATCTGAACACGCACATGAAATCTCACGGCGAACGAGAGAAACACAAAtgcaatatttgcaatttcgaGAGCTACTGGAAAGCGGCTTTGAAGGTACACCTTAAAATCCACACGGGCGAGAATTTGATCACCTGCGAGATCTGCGGGAAATTAGTGTCGAGTAAGGCTTACCTGCAAATCCACATGCGTATACACTCTGGCGAGAAACCGCATGTCTGTGAAGTGTGTGGCAAAGCTTTCAGCGTTCGGAAATATCTGATTGTACACTTGAGAACGCATACAGGCGAAAGACCGTACGAGTGTAAGGTGTGCCAGAAAAGATTTACGCAGCAGGGTTCGTTGAATTCTCACATGAAGTCGCATAACGAACGAAAGTGA
- Protein Sequence
- MVRKFLTAIRELPGTEKLKVFNVVSHGYVHFVQRVHETILCPMLFIRTIARRNLLLRIIDRSLTGFVHVPVPFVQASNIKAAHALLSFCRLKAIALWNQSHAAESFNEEDRSFVVVNEINNTYVVQEISHRCESCGEQFDTEADLLVHRTERSILRTREILRKSGRKYTCDECCESFAKKAQLFKHRRGRCKRSATTDSKQCEDKAMKTKKQKNQQAAVSADPIECNVCHKVFKKKKYLNVHKTLHGAPHICHMCGIKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKANLKTHMSVHSDAKPCICDICHKSFGNRVYLRSHMKIHSKPENRRKYRCHICEFETFYSYCYKEHLWTHTGESQVACEVCGKLIRKEYMKIHIRIHTGEKPEICEFCGKAFSSKKCQEIDAEEPKIEQMETLEDMELVKYESDMCTVEEFEQISHQEIITDTLEESQDNMDIKVSLQDEELSVNANKVFTKKYESRKCSIVYECDICNKRMRKKLQFLKHRQDHERNEEEAGMDRCEECDRSFADEEKLRKHVIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKLVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_01417847;
- 80% Identity
- -