Tcar024772.1
Basic Information
- Insect
- Tetragonula carbonaria
- Gene Symbol
- -
- Assembly
- GCA_010645115.1
- Location
- WIUU01001344.1:5701-10295[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.025 3.5 8.9 0.0 1 20 71 90 71 92 0.95 2 19 0.0047 0.65 11.1 1.2 1 21 109 129 109 130 0.97 3 19 0.00011 0.015 16.3 3.0 2 23 171 192 170 192 0.94 4 19 9.1e-05 0.013 16.5 2.2 1 23 196 218 196 218 0.98 5 19 0.00015 0.02 15.9 0.6 3 23 226 246 225 246 0.97 6 19 1.4e-05 0.0019 19.1 4.5 2 23 253 274 252 274 0.96 7 19 0.076 10 7.4 2.7 1 19 283 305 283 307 0.73 8 19 0.14 20 6.5 0.2 3 23 313 332 312 332 0.95 9 19 0.39 55 5.1 2.3 3 13 340 350 339 353 0.89 10 19 0.017 2.3 9.4 2.3 1 23 440 462 440 462 0.97 11 19 6.6e-06 0.00092 20.1 0.4 2 23 473 495 472 495 0.95 12 19 0.00012 0.017 16.1 4.9 1 23 501 523 501 523 0.98 13 19 0.03 4.2 8.6 0.4 1 23 527 549 527 549 0.97 14 19 3.8e-06 0.00053 20.9 1.5 3 23 557 577 555 577 0.97 15 19 1.1e-05 0.0015 19.4 0.2 1 23 583 605 583 605 0.98 16 19 0.068 9.4 7.5 0.9 1 23 611 633 611 633 0.97 17 19 7.5e-06 0.001 19.9 0.1 2 23 640 661 639 661 0.97 18 19 5.8e-07 8.1e-05 23.4 0.6 1 23 667 689 667 689 0.98 19 19 1e-07 1.4e-05 25.8 1.9 1 23 695 717 695 717 0.99
Sequence Information
- Coding Sequence
- ATGTTCTGGTTGTTAAAactgGCGTCCAATTTCAAGGCAGCTCACGCTCTGTTGTCTTTTTGCAGACCGAAAAGCGTGAAGACGATATCACCCAAGCGGAATCAGTCTCGCGGCGTTGAATCGTCCAACGAGGAAGATCGATCGTTTGTCGTTGTCAACGAAGTAAATAACAGCCGCGTCGTCCAGGAGGACGATAATGCGTCGCAACGATATCGATGCGAGTCCTGCGATGAACAGTTCGACACGGAGCCTGCTCTGTTGGTTCACAGAACCGAGCGGTCGATCCTTCGAACTCGCGAGGCACTGAGAAACACGGGAAGAAAGTACACGTGCGACGAGTGCTGCGAGAGTTTCGCGAAGAAGGTACAGCTGTTGAAACATCGACGAGGCCGATGCCGCAAAGGATCGGCCAATACGACTGGCAATAAACAGCGCAAACCGAAGGATAAAGCGATAAAAACAAAACGGGAGGGCCAACAACAACAGGCTGCTGTCTCTAGCGGCCCGATAGAATGCAACGTGTGTCATAAGGttttcaagaagaagaaatatctgAATGTTCACAAAACGTTGCACGGGGCGCCACACGTTTGTCACGTGTGCGGCGCCAAACTGACCTCCGAATATTACCTGAAGATTCACATTAGGAGACACAACAAGGAGTTCACTGAATTCTGCGAGGTATGTAACAAAGGATTTTACTTGAAGGCGACATTGAAAACGCACATGAGCGTGCACAGCGACGATAAACCGTGCACATGCGACATTTGTCATAAATCGTTCGGCAACAGAGTCTATCTGAGAAGTCACATGAAGATTCACAGTGAACCGGAGAGCAGGAGAAAGTACAAATGCGAGATCTGCGGGTTCGAGACTTTCTACAGTTACTGTTACAAGGAACACTTGTGGACGCACACGGGAGAAAGCCAGGTGGCCTGCGAGGTCTGCGGCAAATTAATCAGGAGACAATACATGAAGATCCACATTAGGATACATACTGGCGAGAAGCCGGAAATCTGCGAATTTTGCGGCAAGGCATTCAGCTCAAGAAAGTGTCAGGAGATCGACGCCGAGGAACCGAAAATAGAACAAATGGAAACGCTCGAGGATATGGAACTGGTGAAGTATGAGAGTGGCATGTGCACAGTCGAGGAGTTCGAACAGATTAGTCACCAAGAAATCATAGCTGACACGTTGGCAGAAAGTCAAGACAGCATGGACATAAAGGTGTCGCTTCAGGAGGACGAGGGACTTCATTCAATGAACGCGAATAATGTTTTCGCCAAGAAATACGAGAGCAGGAAATGCTCGATCGTTTACGAATGCGACATTTGTAACAAGAGGATGCGCAAGAAGCTTCAATTCCTGAAGCACAGGCAGGACCACGAGAGGAATGACGAGGAGGCTGGAATGGATCGTTGCGACGAATGCGACAGAAGTTTCACGGACGAGGAGAAACTGCGAAAGCACGTGATCAAGGTGCATCAAAAGGAGAAACCTTTCCAATGCGTCCTCTGCAATAAATGCTTCAAAACGGAGGAATTCCTGAAGACTCATCTGAAGCAGCACAACAAACGTTTCACGTGCGATATCTGCGGGATCTCGAAGGTGTCCGGCTACGATCTTCGTTTgcataaaaagaaacacaacGAGGAGTACGTGACGCATTGTGAGATCTGCGGCAAAGGCTTCTACACGAACCAAACTCTGGAGAGGCACTTGCTCACTCATACCGGCGAGAAACCATTCGTCTGCAAGGTGTGCAACACGCCTTACGCGAGCGCCGCTTATCTGAACACGCACATGAAGTCTCACggcgaacgagagaaacacAAATGCAATATCTGCAATTTCGAGAGCTACTGGAAAGCGGCTCTCAAGGTACACCTTAAAATCCACACGGGCGAGAATCTGATTACCTGCGAGATCTGCGGGAAATTAGTGTCGAGTAAGGCTTACCTGCAGATCCATATGCGTATACACTCTGGCGAGAAACCGCATGTCTGCGAAGTGTGTGGCAAGGCTTTCAGCGTTCGGAAATATCTGATTGTACACTTGAGAACGCATACAGGCGAAAGACCGTACGAGTGTAAGGTATGCCAGAAAAGGTTTACGCAGCAGGGTTCGTTGAACTCGCACATGAAGTCGCataacgaacgaaaatga
- Protein Sequence
- MFWLLKLASNFKAAHALLSFCRPKSVKTISPKRNQSRGVESSNEEDRSFVVVNEVNNSRVVQEDDNASQRYRCESCDEQFDTEPALLVHRTERSILRTREALRNTGRKYTCDECCESFAKKVQLLKHRRGRCRKGSANTTGNKQRKPKDKAIKTKREGQQQQAAVSSGPIECNVCHKVFKKKKYLNVHKTLHGAPHVCHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSDDKPCTCDICHKSFGNRVYLRSHMKIHSEPESRRKYKCEICGFETFYSYCYKEHLWTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCQEIDAEEPKIEQMETLEDMELVKYESGMCTVEEFEQISHQEIIADTLAESQDSMDIKVSLQEDEGLHSMNANNVFAKKYESRKCSIVYECDICNKRMRKKLQFLKHRQDHERNDEEAGMDRCDECDRSFTDEEKLRKHVIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKLVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_01417847;
- 80% Identity
- -