Thoc037047.1
Basic Information
- Insect
- Tetragonula hockingsi
- Gene Symbol
- -
- Assembly
- GCA_010645185.1
- Location
- WIUV01001017.1:15683-20092[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.027 5 8.8 0.0 1 20 86 105 86 107 0.95 2 19 0.0029 0.55 11.8 1.1 1 21 124 144 124 145 0.97 3 19 0.00012 0.022 16.3 3.0 2 23 186 207 185 207 0.94 4 19 9.7e-05 0.018 16.5 2.2 1 23 211 233 211 233 0.98 5 19 0.00016 0.029 15.9 0.6 3 23 241 261 240 261 0.97 6 19 1.4e-05 0.0027 19.1 4.5 2 23 268 289 267 289 0.96 7 19 0.08 15 7.3 2.7 1 19 298 320 298 322 0.73 8 19 0.15 28 6.5 0.2 3 23 328 347 327 347 0.95 9 19 0.08 15 7.3 0.4 3 14 355 366 354 369 0.88 10 19 0.018 3.3 9.4 2.3 1 23 455 477 455 477 0.97 11 19 7e-06 0.0013 20.1 0.4 2 23 488 510 487 510 0.95 12 19 0.00013 0.024 16.1 4.9 1 23 516 538 516 538 0.98 13 19 0.032 6 8.6 0.4 1 23 542 564 542 564 0.97 14 19 4e-06 0.00075 20.9 1.5 3 23 572 592 570 592 0.97 15 19 1.2e-05 0.0022 19.4 0.2 1 23 598 620 598 620 0.98 16 19 0.072 13 7.5 0.9 1 23 626 648 626 648 0.97 17 19 8e-06 0.0015 19.9 0.1 2 23 655 676 654 676 0.97 18 19 6.2e-07 0.00012 23.4 0.6 1 23 682 704 682 704 0.98 19 19 1.1e-07 2.1e-05 25.8 1.9 1 23 710 732 710 732 0.99
Sequence Information
- Coding Sequence
- ATGAAAGTAGACACGcctaaatttctaattattcaaCTAACGTCCCCGTTTTTTTGGCGCGTGCAGGCGTCCAATTTCAAGGCAGCTCACGCTCTGTTGTCTTTTTGCAGACCGAAAAGCGTGAAGACGATATCACCCAAGCGGAATCAGTCTCGCGGCGTTGAATCGTCCAACGAGGAAGATCGATCGTTTGTCGTTGTCAACGAAGTAAATAACAGCCGCGTCGTCCAGGAGGACGATAATGCGTCGCAACGATATCGATGCGAGTCCTGCGATGAACAGTTCGACACGGAGCCTGCTCTGTTGGTTCACAGAACCGAGCGGTCGATCCTTCGAACTCGCGAGGCACTGAGAAACACGGGAAGAAAGTACACGTGCGACGAGTGCTGCGAGAGTTTCGCGAAGAAGGCACAGCTGTTGAAACATCGACGAGGCCGATGCCGCAAAGGATCGGCCAATACGATTGGCAATAAACAGCGCAAACCGAAGGATAAAGCGATAAAAACAAAACGGGAGGGCCAAGAACAACAGGCTGCTGTCTCTAGCGGCCCGATAGAATGCAACGTGTGTCATAAGGttttcaagaagaagaaatatctgAATGTTCACAAAACGTTGCACGGGGCGCCACACGTTTGTCACGTGTGCGGCGCCAAACTGACCTCCGAATATTACCTGAAGATTCACATTAGGAGACACAACAAGGAGTTCACTGAATTCTGCGAGGTATGTAACAAAGGATTTTACTTGAAGGCGACATTGAAAACGCACATGAGCGTGCACAGCGACGATAAACCGTGCACATGCGACATTTGTCATAAATCGTTCGGCAACAGAGTCTATCTGAGAAGTCACATGAAGATTCACAGTGAACCGGAGAGCAGGAGAAAGTACAAATGCGAGATCTGCGGGTTCGAGACTTTCTACAGTTACTGTTACAAGGAACACTTGTGGACGCACACGGGAGAAAGCCAGGTGGCCTGCGAGGTCTGCGGCAAATTAATCAGGAGACAATACATGAAGATCCACATTAGGATACATACTGGCGAGAAGCCGGAAATCTGCGAATTTTGCGGCAAGGCATTCAGCTCAAGAAAGTATCAGGAGATCGACGCCGAGGAACCGAAAATAGAACAAATGGAAACGCTCGAGGATATGGAACTGGTGAAGTATGAGAGTGGCATGTGCACAGTCGAGGAGTTCGAACAGATTAGTCACCAAGAAATCATAGCTGACACGTTGGCAGAAAGTCAAGACAGCATGGACATAAAGGTGTCGCTTCAGGAGGACGAGGGACTTCATTCAATGAACGCGAATAATGTTTTCGCCAAGAAATACGAGAGCAGGAAATGCTCGATCGTTTACGAATGCGACATTTGTAACAAGAGGATGCGCAAGAAGCTTCAATTCCTGAAGCACAGGCAGGACCACGAGAGGAATGACGAGGAGGCTGGAATGGATCGTTGCGACGAATGCGACAGAAGTTTCACGGACGAGGAGAAACTGCGAAAGCACGTGATCAAGGTGCATCAAAAGGAGAAACCTTTCCAATGCGTCCTCTGCAATAAATGCTTCAAAACGGAGGAATTCCTGAAGACTCATCTGAAGCAGCACAACAAACGTTTCACGTGCGATATCTGCGGGATCTCGAAGGTGTCCGGCTACGATCTTCGTTTgcataaaaagaaacacaacGAGGAGTACGTGACGCATTGTGAGATCTGCGGCAAAGGCTTCTACACGAACCAAACTCTGGAGAGGCACTTGCTCACTCATACCGGCGAGAAACCATTCGTCTGCAAGGTGTGCAACACGCCTTACGCGAGCGCCGCTTATCTGAACACGCACATGAAGTCTCACggcgaacgagagaaacacAAATGCAATATCTGCAATTTCGAGAGCTACTGGAAAGCGGCTCTCAAGGTACACCTTAAAATCCACACGGGCGAGAATCTGATTACCTGCGAGATCTGCGGGAAATTAGTGTCGAGTAAGGCTTACCTGCAGATCCATATGCGTATACACTCTGGCGAGAAACCGCATGTCTGCGAAGTGTGTGGCAAGGCTTTCAGCGTTCGGAAATATCTGATTGTACACTTGAGAACGCATACAGGCGAAAGACCGTACGAGTGTAAGGTATGCCAGAAAAGGTTTACGCAGCAGGGTTCGTTGAACTCGCACATGAAGTCGCataacgaacgaaaatga
- Protein Sequence
- MKVDTPKFLIIQLTSPFFWRVQASNFKAAHALLSFCRPKSVKTISPKRNQSRGVESSNEEDRSFVVVNEVNNSRVVQEDDNASQRYRCESCDEQFDTEPALLVHRTERSILRTREALRNTGRKYTCDECCESFAKKAQLLKHRRGRCRKGSANTIGNKQRKPKDKAIKTKREGQEQQAAVSSGPIECNVCHKVFKKKKYLNVHKTLHGAPHVCHVCGAKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKATLKTHMSVHSDDKPCTCDICHKSFGNRVYLRSHMKIHSEPESRRKYKCEICGFETFYSYCYKEHLWTHTGESQVACEVCGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKYQEIDAEEPKIEQMETLEDMELVKYESGMCTVEEFEQISHQEIIADTLAESQDSMDIKVSLQEDEGLHSMNANNVFAKKYESRKCSIVYECDICNKRMRKKLQFLKHRQDHERNDEEAGMDRCDECDRSFTDEEKLRKHVIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKLVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215160;
- 90% Identity
- iTF_01417847;
- 80% Identity
- -