Basic Information

Gene Symbol
stc
Assembly
GCA_943736035.1
Location
CALSEY010000155.1:20088-24612[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 4.7e+04 -4.3 1.6 15 19 514 518 513 518 0.81
2 14 0.066 1.6e+03 0.6 0.2 4 10 547 553 546 555 0.95
3 14 6e-08 0.0014 19.9 13.2 3 18 563 578 562 579 0.95
4 14 2.9e-05 0.69 11.3 14.4 1 18 615 632 615 633 0.95
5 14 1.1 2.7e+04 -3.3 0.6 6 10 661 665 660 665 0.89
6 14 6.8e-10 1.6e-05 26.2 14.4 1 18 671 688 671 689 0.98
7 14 0.087 2.1e+03 0.2 12.2 4 18 736 750 729 751 0.85
8 14 2 4.7e+04 -4.4 1.7 5 10 780 785 780 785 0.90
9 14 0.0073 1.7e+02 3.7 10.7 1 11 791 801 791 813 0.89
10 14 6.9e-11 1.6e-06 29.3 14.0 1 19 818 836 818 836 0.98
11 14 2 4.7e+04 -4.3 1.7 6 10 865 869 865 869 0.93
12 14 2 4.7e+04 -7.5 9.7 10 19 883 893 875 893 0.73
13 14 0.0011 26 6.3 12.3 1 16 929 944 929 955 0.81
14 14 1.2e-05 0.28 12.6 11.4 1 18 961 979 961 980 0.89

Sequence Information

Coding Sequence
ATGGCAAGCTGGGATGGGTCCTACTACGGGCCTGAGGACCCAAATTTTTACAACGTAGGAAGAAATTGGAATTATTATCCTCAAAATGGGGCTAATCTTCAGTCAAATATTTCTAATATCGGTCAAGATTCGTTAGTCAATACGTACATGCACGATCCTCAAGCAGCAGCTGCAGCAGCAGCAGCAGCAGGTCACACGCAGTACAACAGACAGCAAGCTTTTTTTGAGAATAATAGATCGCAGCCAAATTTACCGCCTTTTAAATGCAAAAGTGGAAATCCTAGCGATAACAATAAGCCTAGGAAGAAGAATTACCATAATAAATTACCGTTCGTTAATCAGCAGATCGATCCAAGCATAGTAGAAAATTCAAACTTGCATGCTACTGCCGGAGAATTTATACCGAGTAGTTTTAAAGCTTTGCAAGAACCTGGCACGAGCTCTTTGTCCAATAGCAGAATCGACGTTGAACATTACGAGGTTTTGCCGCAGCAGCAAGAAGGATTTAACTTTATGCCCGAAGCTGTGGCACCTAAACCTTATTATACTGATAATAGAAATAAGCGTGAGAAAAAAGATAAGAAATACGATACTAAAAAGAATGATAATTACAAACCGAGAGATTCTCAAGATGGTCAATACCAGGGAAATAATTTATACAAAAATTCGGTTCGTAATCAAGCCCCGAAAAATCCACCTCGCAAATTTCAAAATGATAGATACTCGTCGAATGTGAGACAGTATCCTGAGAATAGTAGGAATTATTCTGTTGATAGAGATAACGATAGAAAAAAATGGCCCGGTAATAGAGAGAACTTTGAAAATGGCTCTCAGATTGGAGAAGACGACGGAACTCAAGCGCCTGACGCAGGGGTCAATAAGTACTATAAAAATTTGGTCTACGACAATTCAACGGCGTCTCGTAATCCGAGACATGATAACGTCCGGCAAAGTAGCGGAGCTCCTAAGCATTATGGCGATCGTAATAACGAGTCAAATCACTCTAGTCATAACTCTGAAGTTGATCATACTCAAGGGATTGGAAAAAATGTTAGAAGATATTTCAACGAAGATCGTGGGGAGAGATATCGGGATAGGAGAGAACGGTACAGCGATAGATACGAGCCTGTAGTTAGAGAGAAGAAACCTAATTATATGGATTATAACGGGTATAAGAACAATTATGAAAGGGAAGAAAGAGGCGAACGGACAAGAGACAAGGATAAAGCTAAGGATAAGGATAATTCTCGAGATATTAAGGACAAGGAGTTCGAAAATTGGCGTCATAAAATCAGTGAAGATGACAAAGTAAGCGCTTTGAAAAAACCGAATAACAGAAGACACGAGACAGACGACGATGCAAGCCAGAGAGAACGTCTCACCGAACAACTGAACAGAGGACAATTGGAGTGTTTGGTATGCTGCGATCGTGTTAGGCAGCAGGATGCTGTTTGGTCATGTTCAAACTGCTATCATGTTCTTCATCTTAAGTGTACAAAAAAATGGGCAAAATCGTCGCATGTTGAAAATGGATGGCGCTGTCCAGCGTGTCAAAATGTAACGTCTGCCATCCCAGAGGAGTACTATTGTTTTTGCGGTAATAACAGCAGTCCGGAATGGAATCGCCGAGACGTAGCTCATTCTTGTGGAGAAGTATGCGGTCGTCTGCGATCAAAAACCAACTGCATTCACAAATGTAATTTATTGTGCCATCCCGGACCGTGCCCACCTTGCGTTGCAATGGTTACTAAGTCTTGTGGCTGTGGAAGAACTTCTCAGACTTTAAAATGCAGCACTGGTACACCTTTGCTGTGCAAATCGACTTGCGAGAAAATTTTAAACTGCACTATTCACACTTGTGAGAGAGATTGCCATCACGGAGAATGTGGGGATTGCGAAAAACTGGTTCATCAAGAATGCTACTGCGGCAAAGATAATCGCGATGTTCAGTGTGTAGCAGATGTTTCACAGACCTACGCTTGCCAATCTATATGTAATAAGTTATTAGAATGTGGTAATCACAATTGTAAGGATTTGTGTCATCCGGGACCTTGCGAGCCATGTGTTCTGAGACCAGAAGCTGTCTCTCATTGCTGTTGCGGACAAACGCCTTTAACCGAGCCGAGAACAAGCTGTTTGGATGAAATTCCAGTGTGCGATAAAATGTGCTGTAAACGTTTGAAATGTGGGCAACCCAGTAATCCTCACATGTGCAAAGTCAAATGTCACCAAGAAGAATGTCCCGATTGTGAAATGACAACTAAAGTAAAATGCCGTTGCGGTAACATGGACAAGGAAATACCATGCAAAGAATTAACATCCAAAGCCGATGATGCACGGTGCCAGAAACGATGCACTAAAAAACGTTCTTGCGGTAGACACAAATGTAATCAAATGTGCTGCATTGATATCGAACACATTTGTCCATTACCTTGCACGCATTCTCTAAGTTGCGGCAGACACAAGTGCGAACAAACTTGTCACAAGGGCAGATGTCAGCCCTGTTGGCGTAGCAGTTTTGAAGAACTTTACTGCGAGTGTGGTGCAGCTGTAATATACCCTCCGGTACCATGTGGAACGAGACGTCCAGTTTGTGAGAAACCTTGTTCACGAGAGCATGTATGTGGCCATCCGGTTCTCCACAATTGTCATAGTGAGCCGATATGCCCGCCTTGTACAGTTCTCACGCAGAAATGGTGTTACGGTAATCACGAGCGTAGAAAAGCAGTACCATGTCATGTTAACGAAGTTTCATGTGGATTGCCGTGTAACAAGCCTTTGTCGTGCAAAAGGCACAGATGTATAACCATTTGTCATCCTGGTACGTGCGAGAAATCTGGACAAGTTTGCGTCCAGCCTTGTACAACTGCTAGGGAATTATGTGGACATATTTGTTCGGCGCCATGCCACGATGGAAAGTGCCCTGAATTAGCGTGTAAAGAAATGGTCAAGgtgacttgccaatgcggacatagaagcatgagtcgtgcttgtgcagaaaattctcgtgagtttcagagaatagctagtggaatcctggctagtaaaatggctgaaatgcagcttggtcattcagtggatttggaagatgtattgggacaaagcgcgagaaagcaaaatcaattgaagactttggaatgcaatgaggaatgtaaaatgattgagagaaatcggagattggcactgggattgcaaatcgttaatccagatttgagcggaaaattaatgccgagatacactgagttcatgaaacaatggggAAAGAAGGATCCAAACTTTTGCCAAATGATACACGATAGATTGACTGAGCTAGTTCAACTCGCTAAAATGTCGAAACAAAAATCTAGAAGCTATTCATTCGAGAGTATGAACCGTGATAAGCGTCATTTTGTTCATGAATGTTGCGAACATTTTGGATGCGAGAGTCAGGCATACGATCAAGAACCGAAAAGGAATATTGTCGCTACGGCTGTTAAAGATAAGtgctggctgccgagtttgagcttacttgaattgttacaaagagaaagtggccagagaaaagtaccaggaccaatgTTGAATGCTGCAAAAGCTACGAGTTCTCTAAGGAATGTAGAAGTATTACCACTGCCGACTAAAAAGGGTCATAAGATCCAGCCTGCGACGGTGATTCCAAAATCACCTGAGCCTGAAATAGACTACTTTGATTACCAAGGTTGA
Protein Sequence
MASWDGSYYGPEDPNFYNVGRNWNYYPQNGANLQSNISNIGQDSLVNTYMHDPQAAAAAAAAAGHTQYNRQQAFFENNRSQPNLPPFKCKSGNPSDNNKPRKKNYHNKLPFVNQQIDPSIVENSNLHATAGEFIPSSFKALQEPGTSSLSNSRIDVEHYEVLPQQQEGFNFMPEAVAPKPYYTDNRNKREKKDKKYDTKKNDNYKPRDSQDGQYQGNNLYKNSVRNQAPKNPPRKFQNDRYSSNVRQYPENSRNYSVDRDNDRKKWPGNRENFENGSQIGEDDGTQAPDAGVNKYYKNLVYDNSTASRNPRHDNVRQSSGAPKHYGDRNNESNHSSHNSEVDHTQGIGKNVRRYFNEDRGERYRDRRERYSDRYEPVVREKKPNYMDYNGYKNNYEREERGERTRDKDKAKDKDNSRDIKDKEFENWRHKISEDDKVSALKKPNNRRHETDDDASQRERLTEQLNRGQLECLVCCDRVRQQDAVWSCSNCYHVLHLKCTKKWAKSSHVENGWRCPACQNVTSAIPEEYYCFCGNNSSPEWNRRDVAHSCGEVCGRLRSKTNCIHKCNLLCHPGPCPPCVAMVTKSCGCGRTSQTLKCSTGTPLLCKSTCEKILNCTIHTCERDCHHGECGDCEKLVHQECYCGKDNRDVQCVADVSQTYACQSICNKLLECGNHNCKDLCHPGPCEPCVLRPEAVSHCCCGQTPLTEPRTSCLDEIPVCDKMCCKRLKCGQPSNPHMCKVKCHQEECPDCEMTTKVKCRCGNMDKEIPCKELTSKADDARCQKRCTKKRSCGRHKCNQMCCIDIEHICPLPCTHSLSCGRHKCEQTCHKGRCQPCWRSSFEELYCECGAAVIYPPVPCGTRRPVCEKPCSREHVCGHPVLHNCHSEPICPPCTVLTQKWCYGNHERRKAVPCHVNEVSCGLPCNKPLSCKRHRCITICHPGTCEKSGQVCVQPCTTARELCGHICSAPCHDGKCPELACKEMVKVTCQCGHRSMSRACAENSREFQRIASGILASKMAEMQLGHSVDLEDVLGQSARKQNQLKTLECNEECKMIERNRRLALGLQIVNPDLSGKLMPRYTEFMKQWGKKDPNFCQMIHDRLTELVQLAKMSKQKSRSYSFESMNRDKRHFVHECCEHFGCESQAYDQEPKRNIVATAVKDKCWLPSLSLLELLQRESGQRKVPGPMLNAAKATSSLRNVEVLPLPTKKGHKIQPATVIPKSPEPEIDYFDYQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2