Basic Information

Gene Symbol
stc
Assembly
GCA_963924015.1
Location
OZ001258.1:32508875-32513574[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 2.8e+04 -4.3 1.6 15 19 505 509 504 509 0.81
2 15 0.19 2.7e+03 -0.8 0.3 4 10 538 544 537 546 0.93
3 15 7e-07 0.01 16.5 17.2 3 18 554 569 540 570 0.88
4 15 3.8e-05 0.54 11.0 14.0 1 18 606 623 606 624 0.95
5 15 0.38 5.4e+03 -1.8 1.0 5 10 651 656 651 656 0.95
6 15 5.6e-10 7.9e-06 26.4 14.2 1 18 662 679 662 680 0.99
7 15 2 2.8e+04 -5.1 3.1 6 12 710 716 710 716 0.88
8 15 0.022 3.1e+02 2.1 11.8 4 18 727 741 720 742 0.85
9 15 2 2.8e+04 -4.4 1.7 5 10 771 776 771 776 0.90
10 15 0.0074 1.1e+02 3.7 10.8 1 11 782 792 782 804 0.89
11 15 6.9e-11 9.8e-07 29.3 14.0 1 19 809 827 809 827 0.98
12 15 1.6 2.3e+04 -3.8 1.4 6 10 856 860 856 860 0.94
13 15 2 2.8e+04 -7.4 9.7 10 19 874 884 866 884 0.73
14 15 0.0001 1.5 9.6 13.0 1 16 920 935 920 946 0.81
15 15 4.7e-06 0.067 13.9 13.1 1 19 952 971 952 971 0.96

Sequence Information

Coding Sequence
ATGGCAAGCTGGGATGGGTCCTACTACGGGCCTGAGGACCCAAATTTTTACAACATGGGAAGAAACTGGAacttttttcctcaaaatGGTTCAAACCCTTCCTCAAATATGTCCAATTTGAGTCAAGGTTCGTTATTAAATCCGTACATGCAGGATCCTCAAGTAGTGGGTCACACGCAGTATAATAGACAGCAAgcattctttgaaaataatagatcGCAGCCAAATTTACCACCTTTTAAATGCAAGAGTGGAAATcccaacgataataataagcctagaaaaaagaattatcaCGGTAAATTGCCATTTGTTAATCAGCCGATTGATCCGAGTatagttgaaaattcaaacttgCATGCTACCGCCGGAGAGTTTATACCAAGTAGTTTTAAGGGGTTGCAAGAACCGGGAACAAGTTCTTTGTCAAATAGCAGAATTGATATGGAAAATTTCGAAGCTTTATCTCAGCAGCCTATAGAAGGCTTTGACTTTGTCCCTGAAACTGGAGTATCAAAATCTTATTATACCGATAATAGGAATAAGCGtgataaaaaagagaagaagtatgataataagaaaaacgATAATTATAAGCCTCGAGATGCCCAAGATGGTCAATATCAGAGcactaatttatataaaaattcagtgCGAAACCAAGCTCCGAAGAATCGCAAATTTCCGACTGATAGATACTCAAATGCTAGACAATATCCAGAAAATAGTCGTAATTATTCCGCCGATAAGGATAATGATAGAAAGAAATGGCTCGGTAATAGAGAGAGTTTTGAAAACGGTTCCCAACCTGGTGAAGATGATGGAACTCAGCCGGCAGATGCAGGGCTTAATAAATACTACAAGAATTCGGTTTACGAGAATCCAGCTGCGGTTCGTAACCCAAGACATGACAATGTCCGGCAATCTAGTAGCGCTTCTAAACATTATAGCGAACGTACTAACGAATCAAACCACTCTAGTCATAACTCTGAAGTGGAGCATACTCAAGGAATTGGAAAAAATGTTAGGAGATATTTCAACGAAGATCGCGGGGAAAGATATCGAGATAGGAGAGAGAGGTACAGCGATAGATACGAGCCTGTAGTGAGAGAGAAGAAACCTAATTACACAGAATACAATGGGTATAAAAATAGTTATGAAAGAGAAGATAGAGGCGAACGGACGAGAGACAAGGACAAATCTAAGGATAAAGATAATGCTAGAGATATTAAGGATAAGGAGTTCGAAAACTGGCGTCATAAAATCGGCGAAGATGACAAAGGAAGTGCTttgaaaaaaccaaataaCAAAAGACATGAAAaagatgacGATGCAAGCCAGAGGGAACGTCTCACTGAACAATTGAACAGAGGACAATTGGAGTGTTTAGTATGCTGCGATCGTGTCAGGCAGCAAGATGCTGTTTGGTCATGTTCGAACTGTTATCATGTTCTTCATCTCAAGTGTACTAAAAAATGGGCAAAGTCCTCGCATGCCGaaaatggatggcgctgtcCAGCATGTCAAAATGTAACGTCCGCTATCCCAGAGGAATACTATTGTTTTTGCGGTAATAGCAGCAGTCCCGAATGGAATCGTCGAGACGTAGCTCATTCGTGTGGCGATGTATGTGGTCGTCTCAGATCAAAAACTAACTGCATTcataaatgtaatttattgtgCCATCCCGGGCCATGCCCACCTTGCGTTGCAATGGTTACCAAGTTCTGTGGTTGCGGAAGAACTTCACAAACATTAAAGTGCAGTACTGGTACACCCTTACTGTGTGCTTCGActtgcgaaaaaattttaaactgcgCTATTCATAATTGTGAAAGAAATTGCCATCATGGAGAGTGTGGGGATTGTGAAAAATTGGTACATCAAGaatgttACTGCGGAAAAGACAGTCGCGATGTCCCGTGTGTAGCAGATGTTTCAACAACTTACACTTGCCAATCTATTTGTAATAAGTTATTAGAATGTGGTAATCACAATTGCAAAGACTTGTGTCATCCGGGACCTTGCAAGCCATGTATTCTGAGACCAGATGCAGTATCTCATTGTTGTTGCGGACAAACGCCATTAACCGAGCCTAGAACTAGCTGTTTGGACGAAATTCCAGTTTGCGATAAAACGTGTTGTAAACGTCTTAAATGTGGGCAACCCAgtAATCCTCATATGTGTAAAGCCAAATGTCACCAAGATGAATGTCCTGATTGTGAAATGACAACAAAAGTTAAATGCCGGTGTGGTAACATGGACAAAGAAATTCCATGCAAAGAATTAACGTCTAAAGCTGATGATGCACGATGCCAGAAGAGATGCACAAAAAAACGATCTTGTGGTAGGCACAAGTGTAATCAGATGTGCTGCATCGATATTGAACACATCTGTCCATTGCCTTGCACACATTCTCTTAGTTGCGGCAGACACAAGTGCGAACAAACTTGTCACAAGGGTAGATGTCAGCCCTGTTGGCGTAGCAGTTTTGAAGAACTTTACTGCGAGTGTGGAGCCGCTGTAATATATCCACCAGTACCGTGTGGAACGAGACGTCCAGTTTGCGAGAGACCTTGTTCACGACAGCATGTCTGCGGCCATCCGGTACTTCACAATTGTCATAGCGAGCCGATATGTCCACCTTGTACTGTTCTGACACAGAAATGGTGTTACGGTAATCACGAGCGTAGGAAAGCTGTCCCATGTCACGTTAACGAAGTTTCATGTGGATTACCATGCAACAAACCTTTGTCGTGCAAAAGGCACAAATGTATAACTATTTGTCATCCTGGTCCTTGCGAGAAATCGGGACAAGTTTGTGTTCAGCCCTGTACAACTCCTAGAGAATTGTGCGGGCATATTTGTTCCGCGCCATGCCATGACGGAAAATGTCCTGAATTACCGTGCAAAGAAATGGTCAAGGTTACTTGTCAATGTGGACATAGAACCATGAGTCGAGCTTGTGCCGAAAACTCTCGAGAGTTTCAGAGAATAGCTAGTGGAATTTTGGCTAGCAAAATGGCTGAAATGCAACTAGGTCATTCGGTAGACTTGGAAGACGTTTTGGGTCAAAGTGCAAGGAAACAAAATCAATTGAAGACTTTGGAATGTAATGAAGAATGTAAAATGATTGAGAGAAATCGTAGATTGGCACTGGGATTGCAAATTGTTAATCCAGATTTGAGCGGAAAATTAATGCCGAGATACACTGAGTTTATGAAACAATGGGGAAAGAAGGATCCAAACTTTTGTCAAATGATACACGATAGATTGACGGAATTAGTTCAACTCGCTAAAATGTCTAAACAAAAATCTAGAAGTTATTCATTTGAAAGTATGAACCGTGATAAGCGTCATTTTGTTCATGAATGTTGTGAGCATTTTGGATGCGAAAGTCAGGCATACGATCAAGaaccaaaaagaaatattgttGCTACTGCTGTAAAAGATAAGtgCTGGCTGCCGAGCTTGAGCTTACtcgaattattacaaagaGAAAGCGGCCAAAGGAAAGTACCAGGACCAATGTTGAATGCTGCAAAAGGCACGAGCTCTCTAAGAAACGTAGAAGTATTACCACTGCCGACTAAAAAGGGTCATAAAACCCAGCCTGCAACGGTGATTCCAAAATCACCTGAGCCTGAAATAGATTACTTTGATTACCAGGGTTGA
Protein Sequence
MASWDGSYYGPEDPNFYNMGRNWNFFPQNGSNPSSNMSNLSQGSLLNPYMQDPQVVGHTQYNRQQAFFENNRSQPNLPPFKCKSGNPNDNNKPRKKNYHGKLPFVNQPIDPSIVENSNLHATAGEFIPSSFKGLQEPGTSSLSNSRIDMENFEALSQQPIEGFDFVPETGVSKSYYTDNRNKRDKKEKKYDNKKNDNYKPRDAQDGQYQSTNLYKNSVRNQAPKNRKFPTDRYSNARQYPENSRNYSADKDNDRKKWLGNRESFENGSQPGEDDGTQPADAGLNKYYKNSVYENPAAVRNPRHDNVRQSSSASKHYSERTNESNHSSHNSEVEHTQGIGKNVRRYFNEDRGERYRDRRERYSDRYEPVVREKKPNYTEYNGYKNSYEREDRGERTRDKDKSKDKDNARDIKDKEFENWRHKIGEDDKGSALKKPNNKRHEKDDDASQRERLTEQLNRGQLECLVCCDRVRQQDAVWSCSNCYHVLHLKCTKKWAKSSHAENGWRCPACQNVTSAIPEEYYCFCGNSSSPEWNRRDVAHSCGDVCGRLRSKTNCIHKCNLLCHPGPCPPCVAMVTKFCGCGRTSQTLKCSTGTPLLCASTCEKILNCAIHNCERNCHHGECGDCEKLVHQECYCGKDSRDVPCVADVSTTYTCQSICNKLLECGNHNCKDLCHPGPCKPCILRPDAVSHCCCGQTPLTEPRTSCLDEIPVCDKTCCKRLKCGQPSNPHMCKAKCHQDECPDCEMTTKVKCRCGNMDKEIPCKELTSKADDARCQKRCTKKRSCGRHKCNQMCCIDIEHICPLPCTHSLSCGRHKCEQTCHKGRCQPCWRSSFEELYCECGAAVIYPPVPCGTRRPVCERPCSRQHVCGHPVLHNCHSEPICPPCTVLTQKWCYGNHERRKAVPCHVNEVSCGLPCNKPLSCKRHKCITICHPGPCEKSGQVCVQPCTTPRELCGHICSAPCHDGKCPELPCKEMVKVTCQCGHRTMSRACAENSREFQRIASGILASKMAEMQLGHSVDLEDVLGQSARKQNQLKTLECNEECKMIERNRRLALGLQIVNPDLSGKLMPRYTEFMKQWGKKDPNFCQMIHDRLTELVQLAKMSKQKSRSYSFESMNRDKRHFVHECCEHFGCESQAYDQEPKRNIVATAVKDKCWLPSLSLLELLQRESGQRKVPGPMLNAAKGTSSLRNVEVLPLPTKKGHKTQPATVIPKSPEPEIDYFDYQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01413836;
90% Identity
iTF_01413836;
80% Identity
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