Basic Information

Gene Symbol
stc
Assembly
GCA_947538915.1
Location
OX384531.1:8201386-8205951[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 3.2e+04 -4.3 1.6 15 19 505 509 504 509 0.81
2 14 0.19 3e+03 -0.8 0.3 4 10 538 544 537 546 0.93
3 14 7e-07 0.011 16.5 17.2 3 18 554 569 540 570 0.88
4 14 2.2e-05 0.35 11.7 14.8 1 18 606 623 606 624 0.95
5 14 0.63 1e+04 -2.5 1.9 5 10 651 656 651 656 0.95
6 14 5.6e-10 8.8e-06 26.4 14.2 1 18 662 679 662 680 0.99
7 14 0.00033 5.2 8.0 12.7 4 18 727 741 720 742 0.86
8 14 2 3.2e+04 -4.4 1.7 5 10 771 776 771 776 0.90
9 14 0.0074 1.2e+02 3.7 10.8 1 11 782 792 782 804 0.89
10 14 6.9e-11 1.1e-06 29.3 14.0 1 19 809 827 809 827 0.98
11 14 0.7 1.1e+04 -2.7 0.8 6 10 856 860 855 860 0.89
12 14 2 3.2e+04 -6.6 9.3 10 19 874 884 866 884 0.79
13 14 0.0001 1.6 9.6 13.0 1 16 920 935 920 946 0.81
14 14 1.2e-05 0.19 12.6 11.4 1 18 952 970 952 971 0.89

Sequence Information

Coding Sequence
ATGGCAAGCTGGGATGGGTCCTACTACGGGCCTGAGGACCCAAATTTTTACAATGTAGGAAGAAATTGGAACTATTATCCTCAAAACGGCTCCAATCCTCACTCAAATATTTCTGATTTGCGTCAAGATTCATTAGTCAATATGTATATGCAGGATCCTCAAGCAACCGGTCACACGCAGTACAATAGGCAGCAAGCTTTCTTTGAGAATAATAGATCGCAACCAAATTTACCGCCTTTCAAATGCAAGAGTGGAAACCCTAACGATAATAATAAGCCGAGGAAGAGGAATTACCATAATAAATTGCCATTTGTTAATCAGCAGATTGATCCAAGCATAGTAGAAAATTCAAATTTGCATGCTACTGCCGGGGAATTTATACCGAGTAGTTTTAAGGCTTTGCAAGAACCTGGGACAAGCTCTTTGTCCAATAGCAGAATTGACGTTGCACATTATGAAGTTTTGCCTCAGCAGCCAGAAGGCTCTAACTTTGTGCCAGAAACTGTAGCAGCTAAATCTTATTATACTGATAATAGGAATAAGCGTGAGAAAAAAGAGAAGAAGTATGACACTAAAAAGAACGATAATTACAAGCTGAGAGATTCTCAAGATAGTCAATATCAGGGCAATAATTTGTACAAAAATTCAGTGCGAAATCAAGCCCCAAAGAATCGAAAATTCCAGAATGATAGATACTCGAATGTGAGACAGTATCCGGAAAATAGTCGCAATTATTCTGTTGACAAAGATAACGATAGAAAAAAATGGCTCGGTAATAGAGAGAGCTTTGAAAATGGTTCTCAGCTTGGAGAAGACGATGGAGCTCAAGCGCCGGACGCAGGGGTTAATAAGTACTATAAGAATTTGGTCTACGACAATTCAGCTACGACGGCTCGTAACCCAAGACATGATAATGTCCGGCAAACTAGTGGGGCTCCTAAGCATTATATTGATCGTAATAACGAGTCTAATCACTCTAGTCATAACTCTGAAGTGGAGTATAATCAAGCGATTGGGAAAAATATTAGAAGATATTTCAACGAAGATCGCGGGGAAAGATATCGGGATAGGAGAGAGCGGTACAGCGATAGATACGAGCCTGTAGTTAGAGAGAAAAAACCTAATTATTTGGACTATAATGGGTATAAGAACAGTTATGAAAGGGAAGAAAGAGGTGAACGGATAAGAGACAAGGATAAATCTAAGGATAAGGATAATTTTCGAGATATGAAGGATAAGGAGTTTGAAAATTGGCGTCATAAAATCACCGAAGATGACATAGGAAACGCTTTGAAAAGACCGAATAACAAAAAACACGAGAAAGATGACGATGCAAGCCAGAGGGAACGCCTCACCGAACAACTGAACAGAGGACAATTGGAGTGTTTGGTATGCTGTGATCGTGTTAGGCAGCAGGATGCTGTTTGGTCATGTTCAAACTGCTATCACGTTCTCCATCTTAAGTGTACCAAAAAATGGGCAAAATCCTCGCATGCTGAAAATGGATGGCGCTGTCCAGCGTGTCAAAATGTAACGTCCGCCATCCCAGAGGAGTACTATTGTTTTTGCGGTAATAATAGCAGTCCGGAATGGAATCGCCGAGACGTAGCTCATTCTTGTGGAGATGTATGTGGTCGTCTGCGATCAAAAACCAACTGCATTCACAAATGTAATTTATTGTGCCATCCCGGGCCGTGCCCGCCTTGCGTTGCAATGGTTACTAAGTTTTGTGGCTGCGGAAGAACTTCGCAGACGTTAAAATGCAGCACTGGGACACCTTTGCTGTGCACATCGACTTGCGAGAAAATTTTAAATTGCACTATTCATACTTGTGAAAGAAATTGCCATCACGGAGAGTGTGGGGATTGCGAAAAACTTGTTCATCAAGAATGTTACTGTGGCAAAGATAATCGCGATGTTCCGTGCGTAGCAGATGCTTCACTAACCTACACTTGCCAATCTACATGTAATAAGTTATTAGAATGTGGTAATCACAATTGTAAGGACTTGTGTCATCCGGGACCTTGCAAGCCATGTATTTTGAGACCAGAAGCTGTCTCTCATTGTTATTGCGGACAAACTCCGTTAACTGAGCCGAGAACTAGCTGTTTGGATGAAATTCCAGTATGCGATAAAATGTGCTGTAAACGTCTTAAATGTGGGCAACCCAGTAATCCTCACATGTGCAAAGTTAAATGTCACCAAGGAGAATGTCCCGATTGTGAAATGACAACTAAAGTAAAATGCCGGTGCGGGAACATGGACAGGGAAATACCATGCAAAGAATTAACATCTAAAGCTGATGATGCACGGTGCCAGAAACGATGCACTAAAAAACGATCTTGCGGTAGACACAAATGTAATCAGATGTGCTGCATTGATATCGAACACATCTGCCCATTACCTTGCACACATTCTCTCAGTTGCGGCAGACACAAGTGCGAACAGACGTGTCACAAGGGCAGATGTCAGCCCTGTTGGCGTAGCAGTTTTGAAGAACTTTACTGCGAGTGTGGTGCGGCTGTAATATACCCTCCAGTACCATGTGGAACGAGACGCCCAGCTTGTGAGAGACCTTGTTCCCGAGAACGTGTATGCGGCCATCCGGTTCTCCACAACTGTCACAGCGAGTCGACATGTCCGCCTTGTACAGTTCTCACGCAGAAATGGTGTTACGGTAATCACGAGCGTAGGAAAGCAGTCCCATGTCATGTTAACGAAGTTTCATGTGGATTGCCATGTAACAAGCCTTTGTCGTGCAAAAGGCACAAATGTATAACAATTTGTCATCCTGGTCCGTGCGAGAAATCGGGACAAGTGTGTGTCCAGCCTTGTACAACTCCTAGGGAATTATGCGGACATATTTGTTCGGCGCCGTGCCACGACGGAAAGTGCCCTGAATTAGCATGTAAAGAAATGGTCAAGgtgacttgcctatgtggacatagaagcatgagtcgagcttgtgcagaaaattctcgtgagtttcaaagaatagctagtggaattctggctagtaaaatggccgaaatgcagctcggtcattcggtggatttggaagatgtcttgggacaaagcgcaaggaaacaaaatcaattgaagactttggaatgcaatgaagaatgtaagatgattgagagaaatcggagattggcactgggattgcaaatcattaatccagatttgagcggaaagttaatgccgagatacactgagttcatgaaacaatggggAAAGAAGGATCCGAACTTCTGTCAAATGATACACGATAGATTGACAGAACTAGTTCAACTCGCTAAAATGTCTAAACAAAAATCTAGAAGCTATTCATTCGAAAGTATGAACCGTGACAAGCGTCATTTTGTTCATGAATGTTGCGAACATTTTGGATGCGAGAGTCAGGCATACGATCAAGAACCAAAAAGGAATATTGTTGCTACGGCTGTTAAAGATAAGtgctggctgccaagtttgagcttacttgaattgttacaaagagaaagtggccagaggaaagtaccaggaccaatgTTGAATGCTGCAAAAGCTCCGAGCTCTCTAAGGAACGTAGAAGTATTACCACTGCCGACTAAAAAGGGTCATAAGATCCAGCCTGCAACAGTGATTCCAAAATCACCTGAGCCTGAAATAGACTACTTTGATTACGAAGGTTGA
Protein Sequence
MASWDGSYYGPEDPNFYNVGRNWNYYPQNGSNPHSNISDLRQDSLVNMYMQDPQATGHTQYNRQQAFFENNRSQPNLPPFKCKSGNPNDNNKPRKRNYHNKLPFVNQQIDPSIVENSNLHATAGEFIPSSFKALQEPGTSSLSNSRIDVAHYEVLPQQPEGSNFVPETVAAKSYYTDNRNKREKKEKKYDTKKNDNYKLRDSQDSQYQGNNLYKNSVRNQAPKNRKFQNDRYSNVRQYPENSRNYSVDKDNDRKKWLGNRESFENGSQLGEDDGAQAPDAGVNKYYKNLVYDNSATTARNPRHDNVRQTSGAPKHYIDRNNESNHSSHNSEVEYNQAIGKNIRRYFNEDRGERYRDRRERYSDRYEPVVREKKPNYLDYNGYKNSYEREERGERIRDKDKSKDKDNFRDMKDKEFENWRHKITEDDIGNALKRPNNKKHEKDDDASQRERLTEQLNRGQLECLVCCDRVRQQDAVWSCSNCYHVLHLKCTKKWAKSSHAENGWRCPACQNVTSAIPEEYYCFCGNNSSPEWNRRDVAHSCGDVCGRLRSKTNCIHKCNLLCHPGPCPPCVAMVTKFCGCGRTSQTLKCSTGTPLLCTSTCEKILNCTIHTCERNCHHGECGDCEKLVHQECYCGKDNRDVPCVADASLTYTCQSTCNKLLECGNHNCKDLCHPGPCKPCILRPEAVSHCYCGQTPLTEPRTSCLDEIPVCDKMCCKRLKCGQPSNPHMCKVKCHQGECPDCEMTTKVKCRCGNMDREIPCKELTSKADDARCQKRCTKKRSCGRHKCNQMCCIDIEHICPLPCTHSLSCGRHKCEQTCHKGRCQPCWRSSFEELYCECGAAVIYPPVPCGTRRPACERPCSRERVCGHPVLHNCHSESTCPPCTVLTQKWCYGNHERRKAVPCHVNEVSCGLPCNKPLSCKRHKCITICHPGPCEKSGQVCVQPCTTPRELCGHICSAPCHDGKCPELACKEMVKVTCLCGHRSMSRACAENSREFQRIASGILASKMAEMQLGHSVDLEDVLGQSARKQNQLKTLECNEECKMIERNRRLALGLQIINPDLSGKLMPRYTEFMKQWGKKDPNFCQMIHDRLTELVQLAKMSKQKSRSYSFESMNRDKRHFVHECCEHFGCESQAYDQEPKRNIVATAVKDKCWLPSLSLLELLQRESGQRKVPGPMLNAAKAPSSLRNVEVLPLPTKKGHKIQPATVIPKSPEPEIDYFDYEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01413836;
90% Identity
iTF_01413836;
80% Identity
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