Trug002840.1
Basic Information
- Insect
- Temnothorax rugatulus
- Gene Symbol
- retn
- Assembly
- GCA_035220575.1
- Location
- JASTWL010000019.1:953478-958940[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-17 4.4e-14 54.0 0.1 29 89 4 62 1 62 0.93 2 2 3.9 1.7e+04 -2.4 0.0 9 28 160 182 157 184 0.61
Sequence Information
- Coding Sequence
- ATGGCAAAATCCGTATTGGATCTGTTCGAGCTTTACAAGTTGGTGGTACAGCGAGGTGGATTGGTCGAGGTAATCAACAAGAAGCTGTGGCAGGAAATCATCAAAGGTCTCAAGCTGCCAGCGAGCATCACTTCCGCCGCGTTTACTTTGCGAACTCAGTATATGAAGTATCTGTATCCatacgagagagagaaggaggcgCTATCGACCCAAGAACAGCTCCAGACAGCGATCGAGACGAATCGTCGTGAGAGCCGCAGGAACAATTACAATTACGGTAACAACGACAATCTAGTGACGCGCAATCAGCACAATTCGCTGCCGCAGAATCCGATGCCGTTGCCGATCTCCATCGCCCAAATGGCGGTGGCTGCGAACGAAGCGTCGCAGCATCACGTCGTGAATGGACATCCGCATGCTGCGCAACACCATCCGCACGCTCCGCCGCATCTTCCATCAAACCTGACAACTGGTCAACTTTCAGAATACATGATGAGGATACTGAGAGACAGAAGCACAATTCCCAATAATCCGATGATCCAAGGTAGCACATCGACACCACCGCCGACAACGGCGGAGGGAATTAAATCCGGACTGCAATTCTGGAATATATACAATCAAGCCAATAGTAACATCTATCCAGCGATGGGACAGCCAGCCTTCTCTCCAACGTCGTCCCACTCGCCATTGGTACCGGCAAATAGTCCCGAACAGAGAGAGGCCTTGGATCTCGCAAACTCCGGAAACAGATTGGATTTGGTATCCTCTCCAAACGCTAGTAGATCCGTGAGTTCGCCACCGGAAGTTCCGAATCCAGAACTGAAGAGAAGTCACGAGGCTGCTGAACTCTTATCTCCGTCTATTAAAAGAATGATGTTATCTGATGAGGAGGGAAATAATATACACTCCCTGCGCATTAGACAGCAGGTTAGCACACGAGaaaatgGACGAAGAGAACTAGAAATTAGTGTAAATATTGATGGTATTTTGTATGAAGGTGTCCTGTCAGTTAAACGTAGTGAGAGTAATAATGAGAGCAGTAGTACTCCGTCAAGCcctaataataatgataaacgGGCACAAAATAACGAATCGTGA
- Protein Sequence
- MAKSVLDLFELYKLVVQRGGLVEVINKKLWQEIIKGLKLPASITSAAFTLRTQYMKYLYPYEREKEALSTQEQLQTAIETNRRESRRNNYNYGNNDNLVTRNQHNSLPQNPMPLPISIAQMAVAANEASQHHVVNGHPHAAQHHPHAPPHLPSNLTTGQLSEYMMRILRDRSTIPNNPMIQGSTSTPPPTTAEGIKSGLQFWNIYNQANSNIYPAMGQPAFSPTSSHSPLVPANSPEQREALDLANSGNRLDLVSSPNASRSVSSPPEVPNPELKRSHEAAELLSPSIKRMMLSDEEGNNIHSLRIRQQVSTRENGRRELEISVNIDGILYEGVLSVKRSESNNESSSTPSSPNNNDKRAQNNES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01406284; iTF_01405474; iTF_01407014; iTF_00765326; iTF_00884841;
- 90% Identity
- iTF_01406284; iTF_01407014; iTF_01405474;
- 80% Identity
- -