Lace014685.2
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- retn
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000108.1:441864-450797[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-21 2.5e-17 64.4 0.0 9 89 56 134 39 134 0.91
Sequence Information
- Coding Sequence
- ATGCACCCTAAGGAAGATCGTAAAAGACTGCGGCACTCGCGTGATTGTTGCGAATTCGTTATTGCTCTTGTTAACGCCCCACGCTGGATATCTCTGGACAAACCTCGTAAAATCCAGCGGTTTTACGCTAGTCGTACTTTAAGACGATCGCAAAATCTCCCTCGGTTGATCACGCAATGTGTAAAGGATGgaacGCCCATCAGCAGACTTCCTATCATGGCAAAATCCGTATTGGATCTCTTCGAGCTTTACAAGTTAGTGGTAAATCGAGGTGGATTGGTCGAGGTAATCAACAAGAAGCTGTGGCAGGAAATCATCAAAGGTCTCAGGCTGCCAGCGAGCATCACTTCCGCCGCGTTTACTTTGCGAACTCAGTATATGAAGTATCTGTATCCatatgagagagagaaggaagcgCTGTCGACCCAAGAACAACTCCAGACAGCGATCGAGACAAATCGCCGTGAGAGCCGCAGGAACAATTACAATTACGGTAACAACGACAATTTAGTACCACGCAGTCAGCACAATTCGCTGCCGCAAAATCCGATGCCTTTGCCGCTCTCCATCGCCCAAATGGCCGCAGTTGCGGGTGAATCGCAGCATCACGTCGTGAATGGACATTCGCACGTTCCGCAACACCATCCGCACGTTCCGCAACACCATCCGCAACTGACAACTAGTCAAGTTTCAGACTTGATGAGGATACTGTCAAGAGACAGAAGCACCGCAGTTCCCAGTAATCCGATGATACAAGGTAGCATATCGACACCGCCAGCAACGGCGGAGGGATTTAGATCCATGCATCTCTGGAATATGTACAGTCAAGGCAACAGTAATATCTATGCAGGGATGGCACAGCCAGCCTTCTCTCCATCGTCGTCCCACTCGCCATTAGCACCGGCAAATAGTCCCGAACCACAAAGAGAGGCCTTGGATCTGGCAAACTCTGGACACAGATTGGATTCGGTATCCTCTCCAAACGCTAGCAGATCCGTAAGTTCACCACCAGAGGGTGCAGAAATGAAGAGAAATCAAGAGACTGCTGAACTCTTATCTCCGTCTATTAAAAGAATGTTGTTATCTGATGAGGAAGGAAATAATATACACTCTCTGCGCATTAGACAGCAGATTAGCACACGAGaaGGAGGACGAAGAGAACTAGAAATTAGTGTAAATATTGATGGTATTTTGTATGAAGGCGTCCTGTCAGTTAAACGTAATGAGAGTAATAATGAGGGCAGTAGTACCCCGTCAAGCCctactaataacgacaaacggACACAAAATAACGAATCGTGA
- Protein Sequence
- MHPKEDRKRLRHSRDCCEFVIALVNAPRWISLDKPRKIQRFYASRTLRRSQNLPRLITQCVKDGTPISRLPIMAKSVLDLFELYKLVVNRGGLVEVINKKLWQEIIKGLRLPASITSAAFTLRTQYMKYLYPYEREKEALSTQEQLQTAIETNRRESRRNNYNYGNNDNLVPRSQHNSLPQNPMPLPLSIAQMAAVAGESQHHVVNGHSHVPQHHPHVPQHHPQLTTSQVSDLMRILSRDRSTAVPSNPMIQGSISTPPATAEGFRSMHLWNMYSQGNSNIYAGMAQPAFSPSSSHSPLAPANSPEPQREALDLANSGHRLDSVSSPNASRSVSSPPEGAEMKRNQETAELLSPSIKRMLLSDEEGNNIHSLRIRQQISTREGGRRELEISVNIDGILYEGVLSVKRNESNNEGSSTPSSPTNNDKRTQNNES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01407951;
- 90% Identity
- iTF_00765326;
- 80% Identity
- -