Smag000318.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000002.1:2068268-2074071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.5 3.3e+02 2.8 4.7 2 23 254 276 254 276 0.96 2 22 0.35 45 5.5 1.3 1 23 360 382 360 382 0.97 3 22 1.9 2.5e+02 3.2 0.3 1 19 389 407 389 407 0.97 4 22 0.0043 0.57 11.5 1.1 1 23 431 453 431 453 0.98 5 22 0.0059 0.78 11.1 0.3 1 20 504 523 504 525 0.94 6 22 0.31 40 5.7 1.5 1 23 537 560 537 560 0.86 7 22 0.0051 0.67 11.3 1.2 2 23 566 587 565 587 0.95 8 22 0.0026 0.35 12.2 2.2 1 23 629 651 629 651 0.97 9 22 0.00072 0.095 14.0 0.1 1 23 657 679 657 679 0.97 10 22 1.7e-07 2.3e-05 25.4 0.5 2 23 717 739 717 739 0.96 11 22 0.0037 0.49 11.7 0.3 3 23 747 768 745 768 0.95 12 22 3.4e-05 0.0045 18.2 0.2 2 23 776 798 775 798 0.96 13 22 0.0032 0.42 11.9 0.4 1 23 808 830 808 830 0.93 14 22 0.044 5.8 8.4 0.1 2 19 887 904 886 905 0.95 15 22 0.0026 0.34 12.2 0.1 2 23 926 947 925 947 0.96 16 22 0.0098 1.3 10.4 2.1 1 23 962 984 962 984 0.97 17 22 0.00019 0.025 15.8 0.4 2 20 1003 1021 1003 1023 0.93 18 22 0.11 14 7.2 0.7 2 23 1055 1077 1054 1077 0.90 19 22 0.00021 0.028 15.6 0.4 2 23 1102 1124 1101 1124 0.92 20 22 0.0029 0.38 12.1 2.0 1 23 1130 1154 1130 1154 0.95 21 22 0.2 26 6.3 2.7 1 23 1159 1182 1159 1182 0.91 22 22 1.4 1.8e+02 3.6 0.5 2 23 1213 1235 1212 1235 0.93
Sequence Information
- Coding Sequence
- ATGAACGAAATTGAAGAGTTGCAAGGCTTAGAAAGTGCTTGCAGACTTTGTTTAACGACAGATGAAACGAGATCATCCATTTTTGGAACTGCACTCTCCTTAGTGCCACTGacagaaaaaatacaaagttgTGTTTCTGTTCAGATTTCACGGGATGACAAGTTATCCACTTTAATTTGCATAACTTGTGTTAACAAAGTCAACCAATGGCACCAATACAAAGAATTGTGTCTCCAGTCTCAGGACAAATTAAAAGAATGGTTAGCCAAACAATCAACACCTATTTCGGTCGTAACCGTAAAGAAAGAACCGGATACTCAAGAATccgaggaaaataaaaaatcgccGGATAAGGATAAAGAACCGGAGGAGATCCCAGTGACAGATGGACCCAGCAACGAAATTGAAGCTCCTATGGAAATCGACGATACACCAACCGAGGAAACAGTCGAACGAGAAACCAGAGGCAGTTCGCAGAGAAGATTGTCCAAAGAAGCTGCTAGCGAAGATAAGCAAGCCGATATCGTGCCGATTAAGATCGAACCTCCAGATGCAGAGGAAGCTGAGGAAATTTTGGAGATTGAATCTCCTGCGGAAATCTTACTCCGAAATCCCTTGGCGACGACCAACAACGGTAAAGAGGACCAAATAGCAGAACCCGATTCGACCCAGAAAAGCGCATCATTATCACAGAGAGTGAAGAAAAAGGTTCGACGAGGTCCTCACACTCATTTCAGAGGAGCAcgcattttcaaaagaaaatgcCTTCATTGTCAAATCAATCTGCATTCCAAAACATCTTACGCGAAGCACATGGCGAGGTTTCACAGCGTCGTGAACAACGCCGCCACAACAATATTAAAACCACTGAGTGCAAGAGTCGCAACGCCTGAAATTACTGAGGTTCCAGCAACCTCCAAGCCGAAAAGGGTTACAAATGAAGTCATTTCTGTAGTTGATACTAGTACTGAGGATGCTGAAGAATTAATTGAAGACGTGGAAgaagaattagaaaatttgggtGAGGACGCGCCCTTGACTCCCGTTCAGCAAAACATCATCAGTCAACTAAAGACCTTCTCCTGTTACTCGTGCGATGAATCTTTTCTGGATCGGCGAAGTACTCTCAATCACATAAGGCAACACATGCCAGATTTGAGATCTTACACTTGTGTTGCTTGTCTCACCGAATTCCCCGATCGGTCTACCTACAAGCAACACTGCGAAGCTTCATTTGAATGCGCAATGAAGATCGCTTTGGTTGTACCGGTACAAGGGACAGAGAAATACTTCACCTGCAACATGTGCCTGCGACCCTTGACCAACAGGAAGGATTTACTCACCCACTTGTCCAAGCATTCGGACAAGCAGTATGAAGAGCTCATGGCACCTTCAGCAGCTCCACCAAAACTTACACCCATGGTTCCTCCTTCAACCTCGAGTTTTCCGCGCCAACCTGACGTTCCAGGCATTCGGTCTCCATACGGAAACGGCGATCCCGCCTGTAATCATGAATGTGATTTATGCGGAATGATCTACAGATACAAACCAAACATGACGAAGCATCGTGAACTCTGCGCTAGTTTGCAGCCGGAAGGCAGGACTTCTTACAAGTGTGTCGACTGTGGAATGACCTTCCTCGTCTTCAGCAAATTCCACAGCCACGTTACGATCGAGCACAGAAAGAAGGAGTTGAAGTGTCCGAAGTGTGCTGCTAAATTCCGTTCTCCGAGCGACTACCTCACTCATCACGAGTATCACCGGATGGGTAAGAAGACCAAGGAACCTTCTTCTGCAAACTGGAATTACAAAAAGCAAGAAGAAGACAAAGAAGTGGAAGTAGAAGTAGAAGATAATCTGCAACACCAACAAAATAAACGCAGATTCAGTTGTAACCTCTGCAGTCTGCATTTCTCATCACGAACCGAACTCGTCGAGCACCGCAATTTGCATCTGAAAGTTAAGATCTACTCGTGTGTGATTTGTCGCAGCATGTTCAGTAGCGCCGGAGCCTTGGAGATCCATATGAAAGATCATGGGATTGACGACCCAACGGAGCGAAATGCCAACAGTTCATGTATGGAATACGGACAGGAGGAGACAGGTTCAACTCCGACGAAGAATTCTAATGCCCCACCTCGCAAGAACGAATGTTTCGAATGTGGAAAGAGCTTTTCCAACTACGCGAATCTAAGAAGACATATCAGAAACGCGCACGAAGACGCGCGTCGCATCGACTGTTCGGAGTGTatcagaactttcaaaaaCAAGGAGTCTTACGAAGAACATCTCCGAAATGCACACAATCCCGAGAAGACCGTCTTGCAATGTCCTCAATGTCCAAAAACTTTCGTCTTCCAGGCGAATCTGGATCTTCATCGCCGCAATGCGCACACCAGTAAGCCAGACAAACCAACTAATCATGAATGCGACGTGTGCGGAAAATCATTCCTGGAGGAATCTTCTCTAAAAATCCACCGCGGCTGGCACAATCGAGCCAATTCGCGCTTCAGCCTTGAAAACTATGACAAAGATCGACTCTCCTTACCGAGTGCACTTCCTAGTTCTTCCAAACCAGCGAAGGCGAGAAAGTCTTTCCCCAACTCTTCGCCTGTAGTTCACCAGCAATTCCAGCAACAACTACAACTACCTGAGCTCCAGTGTCAGGTGTGCGACGACAAATTTGTCGACGTCTCCGAATTGAGAAAGCACGTTTGGGACGTTCACTGCGCTCGTGCGACCAAAGTCGAAAAACCGTTCGTTGTCGGAGACCTGCAGTGTGAACTTTGCACAAACATCTTTCCTGATCAGCAGAGTCTAGAATCTCACATGGAGTGGCACGAGCGCAACCCAATTTTGAGCGACAACTACACCGGAAAGTCCTTCCGCTGTGACGTTTGCGATAAATACTACAGTTCTCTGAAGATTCTTACGAAGCACAAAAAGCTACACAAGCAGGTTTCGCAGCcggctttgaaatttcaatcgcTTTCAATAAAAAGGCCGACTTGCAACACTTGCGGCAGATCCTTCACTGCCGAGTCTTCTCTCAAAAGACACAAGGCAATGTCACCCGAGTGTCAGTCTTATTTCTCAGGAAGACTCACTGATCAAGAACCAAGGAATTCAGATCAAGATTACAGCTTCAAGAAGAAACCTGTAACCTGCCATATTTGCAAGACAGTCTTCCCGAGTATGAGTATTTTGTATCAGCATAAACAGTTGGCGCACAAGGTGCGTTTTAACAAAGATAGAAAGTCACCGAGCAATGAGTGCGTCCCATTGGCTAGTAACGAAGGTGTCTCGTGCAACGTTTGCGGTAAGCAATTCCCTGGCCTCTCCAATCTTAAGCAGCACTTCACGATTAAGCACAAAAACGTTAGCCAGCATCCATGCACGATTGGCAATTGCAAAATGATTTTCTCCACGTCGCACGCCCTTAAGAATCATGAACTCACGCACTCAAACATGATATACAGTTGCAGTCTCTGCGAAAGACACTTTTTCCACAAGGGAGCAATCGTCAAGCACGTCTTCAACGCCCACAAAGCCATCTATCAGGCAACCGCAGACAAGGAGTCTCTTTTCAAGGAAACAGATCTGAGTACCTATGTCGTGAAAGGTGCGACTGGAACTGTTTGCCCGCGATGCCGAATCAAGTACCCAAATATTAAAGCTATGAAGATTCACtacttcaaattccacgagacGTCTGgttaa
- Protein Sequence
- MNEIEELQGLESACRLCLTTDETRSSIFGTALSLVPLTEKIQSCVSVQISRDDKLSTLICITCVNKVNQWHQYKELCLQSQDKLKEWLAKQSTPISVVTVKKEPDTQESEENKKSPDKDKEPEEIPVTDGPSNEIEAPMEIDDTPTEETVERETRGSSQRRLSKEAASEDKQADIVPIKIEPPDAEEAEEILEIESPAEILLRNPLATTNNGKEDQIAEPDSTQKSASLSQRVKKKVRRGPHTHFRGARIFKRKCLHCQINLHSKTSYAKHMARFHSVVNNAATTILKPLSARVATPEITEVPATSKPKRVTNEVISVVDTSTEDAEELIEDVEEELENLGEDAPLTPVQQNIISQLKTFSCYSCDESFLDRRSTLNHIRQHMPDLRSYTCVACLTEFPDRSTYKQHCEASFECAMKIALVVPVQGTEKYFTCNMCLRPLTNRKDLLTHLSKHSDKQYEELMAPSAAPPKLTPMVPPSTSSFPRQPDVPGIRSPYGNGDPACNHECDLCGMIYRYKPNMTKHRELCASLQPEGRTSYKCVDCGMTFLVFSKFHSHVTIEHRKKELKCPKCAAKFRSPSDYLTHHEYHRMGKKTKEPSSANWNYKKQEEDKEVEVEVEDNLQHQQNKRRFSCNLCSLHFSSRTELVEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIDDPTERNANSSCMEYGQEETGSTPTKNSNAPPRKNECFECGKSFSNYANLRRHIRNAHEDARRIDCSECIRTFKNKESYEEHLRNAHNPEKTVLQCPQCPKTFVFQANLDLHRRNAHTSKPDKPTNHECDVCGKSFLEESSLKIHRGWHNRANSRFSLENYDKDRLSLPSALPSSSKPAKARKSFPNSSPVVHQQFQQQLQLPELQCQVCDDKFVDVSELRKHVWDVHCARATKVEKPFVVGDLQCELCTNIFPDQQSLESHMEWHERNPILSDNYTGKSFRCDVCDKYYSSLKILTKHKKLHKQVSQPALKFQSLSIKRPTCNTCGRSFTAESSLKRHKAMSPECQSYFSGRLTDQEPRNSDQDYSFKKKPVTCHICKTVFPSMSILYQHKQLAHKVRFNKDRKSPSNECVPLASNEGVSCNVCGKQFPGLSNLKQHFTIKHKNVSQHPCTIGNCKMIFSTSHALKNHELTHSNMIYSCSLCERHFFHKGAIVKHVFNAHKAIYQATADKESLFKETDLSTYVVKGATGTVCPRCRIKYPNIKAMKIHYFKFHETSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389668;
- 90% Identity
- iTF_01389668; iTF_01390538; iTF_01391414; iTF_01394569; iTF_01392214; iTF_01392977;
- 80% Identity
- -