Sgif019445.1
Basic Information
- Insect
- Synergus gifuensis
- Gene Symbol
- -
- Assembly
- GCA_904066015.1
- Location
- CAJFCO010000172.1:413185-421248[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.4 3.3e+02 2.8 4.7 2 23 254 276 254 276 0.96 2 22 0.33 45 5.6 1.3 1 23 360 382 360 382 0.97 3 22 3.5 4.9e+02 2.3 0.7 1 19 389 407 389 407 0.95 4 22 0.0041 0.57 11.5 1.1 1 23 431 453 431 453 0.98 5 22 0.0095 1.3 10.4 0.2 1 20 504 523 504 525 0.94 6 22 0.21 29 6.2 2.1 1 23 537 560 537 560 0.93 7 22 0.0048 0.67 11.3 1.2 2 23 566 587 565 587 0.95 8 22 0.0014 0.19 13.0 1.3 1 23 629 651 629 651 0.97 9 22 0.00068 0.095 14.0 0.1 1 23 657 679 657 679 0.97 10 22 1.7e-07 2.3e-05 25.4 0.5 2 23 717 739 717 739 0.96 11 22 0.00044 0.061 14.6 0.9 3 23 747 768 746 768 0.96 12 22 6e-05 0.0083 17.3 0.5 2 23 776 798 775 798 0.96 13 22 0.0091 1.3 10.4 0.1 2 23 803 824 803 824 0.92 14 22 0.16 22 6.5 0.0 2 19 881 898 880 899 0.95 15 22 0.0024 0.34 12.2 0.1 2 23 920 941 919 941 0.96 16 22 0.0065 0.9 10.9 2.0 1 23 956 978 956 978 0.98 17 22 0.00015 0.021 16.0 0.9 2 20 997 1015 997 1017 0.93 18 22 0.1 14 7.2 0.7 2 23 1049 1071 1048 1071 0.90 19 22 7.3e-05 0.01 17.0 0.6 2 23 1096 1118 1095 1118 0.92 20 22 0.0027 0.38 12.1 2.0 1 23 1124 1148 1124 1148 0.95 21 22 0.29 41 5.7 1.9 1 23 1153 1176 1153 1176 0.91 22 22 0.6 83 4.7 0.6 2 23 1207 1229 1206 1229 0.93
Sequence Information
- Coding Sequence
- ATGAACGAAATTGAAGAGTTGCAAGGCTTTGAAAGTGCTTGTAGACTTTGTTTAACGACAGATGAAACAAGATCATCCATTTTTGGAACTGCACCTTCCTTAGTGCCACTGACAGAAAAAATACAAAGTTGTGTTTCTGTTCAGATTTCACGGGATGACAAGTTATCCACTTTAATTTGTCTAACTTGTGTTAACAAAGTCAACCAATGGCACCAGTACAAAGAATTGTGTCTCCAGTCTCAGGACAAATTAAAGGAATGGTTGGCCAAACAATCAACACCTATTTCGATCGTGTCCGTAAAGAAAGAACCGGATACTCAAGAATCCGAGGAAAATAAAAAATCCCCGGATAAGGATAAAGAACCAGAGGAGATACCAGTGACAGATGGACCCAGCGACGAAATTGATGCTCCTATGGAAATCGACGATACACCAACCGAGGAAACAGTCGAACCGGAAACCAAAGGCAGTTCGCAGAATAAATCGTCCGAAGAAGCTGGTAGCGAAGATAAGCAAGCTGATATCGTGCCGATTAAAGTCGAACCTCCAGATGTAGAGGAAGCCGAGGAAATTTTGGAGAGCGGATCTTCTGTGGGAATTTTACTCCGAAATCCCTTGGCGACGACCACCAACGGTAAAGAGGACCAAATCGCAGAACCCGATTCAACCCAGAAAAGCGTATTATTATCACAGAGAGGGAAGAAGAAGGTTCGGCGAGGTCCTCACACTCACTTCAGAGGAGCACGCATTTTCAAAAGAAAATGCCTTCATTGTCAAATCAATCTCCATTCCAAAACCTCTTACGCAAAGCACATGGCGAGGTTTCACAGCGTCGTGAACAACGCCTCTACAACAATATTAAAACCTCTGAGTGCAAGAGTCGCAACGCCTGAAATTACTGAGATTCCAGCAGCCTCCAAGCCGAAAAGGGTTGCAAACGAAGTCATTTCTGTAGTCGACACTAGTACCGAGGATGCTGAAGAATTGATTGAAGACGTGGAAGAGGAATTGGAAAATTTGGGTGAAGATGCGCCCTTAACTCCCGTTCAGCAAAACATCATCAGTCAATTAAAAACCTTCTCCTGTTACTCTTGTGATGAATCGTTTCTGGATCGACGAAGTACTCTCAATCACATCAGGCAACATATGCCAGATTTGAGATCTCACACTTGTGTTGCTTGTCTCACTGAATTCCCCGATCGGTCCAGCTACAAACAACACTGCGAAGCCTCGTTTGAATGCGCAATGAAGATCGCTTTGGTTGTTCCAGTACAAGGAACAGAGAAATACTTCACCTGCAACATGTGTCTGCGACCCTTGACCAACAGGAAGGATTTACTCACCCACTTATCCAAGCATTCGGACAAGCAGTATGAGGAGCTCATGGCACCTTCAGCAGCTCCACCAAAACTTACACCTATGGTTCCTCCTTCAACCTCGAACTTTCCGCGCCAACCTGACGTTCCAGGAATTCAGTCACCGTATGGAAACGGTGATCCCGCCTGTAACCATGAATGTGATTTATGCGGAATGATCTACAGATACAAACCAAACATGATAAAGCATCGTGAACTGTGCGCTAGTTTGAAACCGGAAGGCAGAACTTCCTACAAGTGTGTCGACTGTGGAATGACCTTCCTCGTCTTCAGCAAATTCCACAGCCACGTTACGACCGAGCACAGAAAGAAGGAGTTGAAGTGTCCGAAGTGTGCTGCTAAATTCCGTTCCCCGAGCGACTACCTCACACATCACGAGTATCACCGAATGGGTAAGAAGCTCAAGGAACCTTCTTCTACAAACTGGAATTACAAGAAGCAAGAAGCCGACGAAGAATTGGAGATCGAGGAAGAAGATAATCTGCAACACCAACAAAATAAACGCAGATTCAGCTGCAACCTCTGCAGTCTGCATTTCTCATCACGAGCTGAACTCGTTGAACATCGGAATTTGCACCTGAAAGTTAAGATCTACTCGTGTGTTATTTGTCGCAGTATGTTTAGCAGCGCCGGAGCCTTGGAGATCCACATGAAAGATCATGGGATTGACGATCCAACTGAACGAAATGCCAACAGTTCATGTATGGAATACGGACAGGAGGAGACAGGTTCAACTCCGACGAAGAATTCTAATACTTCACTTCGCAAGAACGAGTGTTTCGAATGTGGAAAGAGCTTTTCCAACTACGCAAATCTAAGAAGACACATCAGGAACGCACACGAAGACGCGCGACGCGTTGACTGTTCGGAGTGTGTCAGAACTTTCAAAAACAAGGAGTCTTACGAAGAGCATCTCCGGAATTCACACGATTCAGAGAAGACTGTCTTGAAATGTCCTCAGTGTCCAAAAACTTTCGTCTTCCAGGTGAATCTGGATCTTCATCGTCGCAATTCGCACAACATTAAACCAGAATGCGAAGTGTGCGGTAAATCATTTCTGGAGGAATCTTCTCTAAAAATCCACCGCGGTTGGCACAATCGAGCCAATTCGCGTTTCAGCCTTGAAAACTATGAAAAGGAGCGAGTCTCCTTGCCAAGTGCACTTCCTAGTTCTTCCAAACCAGCGAAGGCGAGAAAGTCTTTCCCTAACTCTTCTCCTGGTGTTCAACAGCAATTTCAGCATCAACTACAATTGCCTGAGCTACAATGTCAGGTCTGCGACGACAAATTTGTCGACGTCGCTGAATTGAGAAAGCACGTTTGGGACGTTCACTGTGCTCGTGCAACCAAAGTCGAAAAACCGTTCGTTGTCGGAGACTTGCAGTGTGAACTTTGCACAAACATCTTTCCTGATCAACAAAGTCTAGAATCTCACATGGAGTGGCACGAGCGCAATCCAATTTTGAGCGACAGCTACACCGGGAAGTCCTACCGCTGTGACGTTTGCGATAAATACTACAGTTCTCTGAAGATTCTTACGAAGCATAAAAAGTTACACAAGCAGGTTTCGCAGCCCACTTTGAAGTTTCAATCACTTTCAATAAAACGGCCGACTTGCCACACTTGCGGCAGATCCTTCACTGCTGAGTCTTCTCTCAAAAGACACAAGGCGATGTCACCTGAGTGTCAAACTTATTTCTCAGGAAGACTTACTGATCAGCAACCAAGAAATTCTGATCAAGATTCCAGTTATAAGAAGAAACCTGTAACCTGCCATATTTGTAAGACAGTCTTCCCGAGTATGAGTATTTTGTATCAGCATAAACAGTTGGCGCACAAGGTGCGTTTTAATAAAGATAGAAAGTCACCGAGCAATGAGTGCGTTCCAGTGGCTAGTAGTGAAGGAGTTTCGTGCAACGTTTGCGGTAAGCAATTCTCTGGCCTCTCCAATCTTAAGCAGCACTTCACGATTAAGCACAAAAATGTTAGCCAGCATCCCTGCACGATTGGCAATTGCAAAATGATTTTCTCCACGTCGCACGCTCTTAAAAATCATGAACTCACACACTCAAATATGATATACAGTTGCAACCTCTGCGAAATACACTTCTTCCACAAGGGAGCAATCGTCAAGCACGTCTTCAACGCCCACAAAGCCATCTATCAGGCTACCGGAGACAAGGAGTCTCTTTTCAAGGAAACAGATTTGAGTACGTATGTCGTAAAAGGAGCGACTGGAACTGTTTGCCCGCGATGCAAAATCAAGTATCCAAATATTAAAGCTATGAAGATTCACTACTTCAAATTCCACGAGACATTTGCTTAG
- Protein Sequence
- MNEIEELQGFESACRLCLTTDETRSSIFGTAPSLVPLTEKIQSCVSVQISRDDKLSTLICLTCVNKVNQWHQYKELCLQSQDKLKEWLAKQSTPISIVSVKKEPDTQESEENKKSPDKDKEPEEIPVTDGPSDEIDAPMEIDDTPTEETVEPETKGSSQNKSSEEAGSEDKQADIVPIKVEPPDVEEAEEILESGSSVGILLRNPLATTTNGKEDQIAEPDSTQKSVLLSQRGKKKVRRGPHTHFRGARIFKRKCLHCQINLHSKTSYAKHMARFHSVVNNASTTILKPLSARVATPEITEIPAASKPKRVANEVISVVDTSTEDAEELIEDVEEELENLGEDAPLTPVQQNIISQLKTFSCYSCDESFLDRRSTLNHIRQHMPDLRSHTCVACLTEFPDRSSYKQHCEASFECAMKIALVVPVQGTEKYFTCNMCLRPLTNRKDLLTHLSKHSDKQYEELMAPSAAPPKLTPMVPPSTSNFPRQPDVPGIQSPYGNGDPACNHECDLCGMIYRYKPNMIKHRELCASLKPEGRTSYKCVDCGMTFLVFSKFHSHVTTEHRKKELKCPKCAAKFRSPSDYLTHHEYHRMGKKLKEPSSTNWNYKKQEADEELEIEEEDNLQHQQNKRRFSCNLCSLHFSSRAELVEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIDDPTERNANSSCMEYGQEETGSTPTKNSNTSLRKNECFECGKSFSNYANLRRHIRNAHEDARRVDCSECVRTFKNKESYEEHLRNSHDSEKTVLKCPQCPKTFVFQVNLDLHRRNSHNIKPECEVCGKSFLEESSLKIHRGWHNRANSRFSLENYEKERVSLPSALPSSSKPAKARKSFPNSSPGVQQQFQHQLQLPELQCQVCDDKFVDVAELRKHVWDVHCARATKVEKPFVVGDLQCELCTNIFPDQQSLESHMEWHERNPILSDSYTGKSYRCDVCDKYYSSLKILTKHKKLHKQVSQPTLKFQSLSIKRPTCHTCGRSFTAESSLKRHKAMSPECQTYFSGRLTDQQPRNSDQDSSYKKKPVTCHICKTVFPSMSILYQHKQLAHKVRFNKDRKSPSNECVPVASSEGVSCNVCGKQFSGLSNLKQHFTIKHKNVSQHPCTIGNCKMIFSTSHALKNHELTHSNMIYSCNLCEIHFFHKGAIVKHVFNAHKAIYQATGDKESLFKETDLSTYVVKGATGTVCPRCKIKYPNIKAMKIHYFKFHETFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389668;
- 90% Identity
- iTF_01393740;
- 80% Identity
- -