Slae000350.1
Basic Information
- Insect
- Synergus laeviventris
- Gene Symbol
- -
- Assembly
- GCA_032275145.1
- Location
- JAUESI010000001.1:2479761-2485708[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.3 3.2e+02 2.8 4.7 2 23 254 276 254 276 0.96 2 22 0.32 43 5.6 1.3 1 23 360 382 360 382 0.97 3 22 1.8 2.4e+02 3.2 0.3 1 19 389 407 389 407 0.97 4 22 0.004 0.54 11.5 1.1 1 23 431 453 431 453 0.98 5 22 0.0055 0.74 11.1 0.3 1 20 504 523 504 525 0.94 6 22 0.2 28 6.2 2.1 1 23 537 560 537 560 0.93 7 22 0.0047 0.63 11.3 1.2 2 23 566 587 565 587 0.95 8 22 0.17 24 6.4 1.2 1 23 625 647 625 647 0.97 9 22 0.00066 0.09 14.0 0.1 1 23 653 675 653 675 0.97 10 22 2.8e-06 0.00038 21.4 0.9 2 23 713 735 713 735 0.95 11 22 0.00013 0.018 16.2 0.5 3 23 743 764 742 764 0.96 12 22 0.0046 0.63 11.3 1.5 2 23 772 794 771 794 0.92 13 22 0.0018 0.24 12.7 0.5 1 23 804 826 804 826 0.93 14 22 0.04 5.5 8.4 0.1 2 19 882 899 881 900 0.95 15 22 0.0024 0.32 12.2 0.1 2 23 921 942 920 942 0.96 16 22 0.011 1.5 10.1 1.6 1 23 957 979 957 979 0.97 17 22 0.00018 0.024 15.8 0.4 2 20 998 1016 998 1018 0.93 18 22 0.097 13 7.2 0.7 2 23 1050 1072 1049 1072 0.90 19 22 0.0002 0.027 15.6 0.4 2 23 1097 1119 1096 1119 0.92 20 22 0.0026 0.35 12.1 1.9 1 23 1125 1149 1125 1149 0.95 21 22 0.18 25 6.3 2.7 1 23 1154 1177 1154 1177 0.91 22 22 0.58 79 4.7 0.6 2 23 1208 1230 1207 1230 0.93
Sequence Information
- Coding Sequence
- atgaaCGAAATTGAAGAGTTGCAAGGCTTAGAAAGTGCTTGCAGACTTTGTTTAACGACAGATGAAACAAGATCATCCATTTTTGGAACTCCAGTCTCCTTAGTGCCACTGACAGAAAAAATACGAAGTTGTGTCTCTGTTCAGattttaagggatgacaAGTTATCTACTTTAATTTGCATAACATGTGTCAACAAAGTCAATCAATGGCATCAATACAAAGAATTGTGCCTCCAGTCTCAGGGCAAATTAGAGGAATGGTTATCCAAACAATCAACACCTATTTCGGTCGTAACCATAAAGAAAGAACCGGACACTCAAGAATCCGGGGAAAATCAAAAATCGCCGGATAAGGATAAAGAACCGGAGGAGATCCCAGTGACAGATGGACCCAGCAATGAAATTGAAACTCCTATGGAAATCGACGATACACCAGCCGAGAAAACAATCGAACTAGAAACCAGAGGAAGTTCGCAGAGAAGATTATCCAAAGAAGTTGGTAGCGAAGATAAGCAAGCCGATATCGTGTCGATTAAAATCGAACCTCCAGATGTAGAGGAAGTCGAGGAAATTTTGGAGACTGAGTCTCCTGATGAAATATTACTCCGAAATCCCTTGGCGACGACCACCAACGGTAAAGAGGACCAAATAGCAGAACCCGATTCAACCCAGAAAAGCGCATCATTGTCACAAAGAGTGAAGAAAAAGGTTCGGCGAGGTCCTCATACTCACTTTAGAGGAGCACgcattttcaaaagaaaatgcCTTCATTGCCAAATCAATCTCCATTCCAAAACTTCCTACGCGAAGCACATGGCGAGGTTTCACAGCGTCGTGAACAACGCCCCCACAACAATATTAAAACCATTGAGTGCAAGAGACGCAACACCTGAAATTACTGAGGTTCCAGCAACCTCCAAGTCGAAAAGGATTGCAAACGAAGTTATTTCTTTAGTTGATACTAGTACTGAGGATGCTGAAGAATTAATTGAAGATGTGGAAgaagaattggaaaatttgGGCGAAGATGCGCCCTTAACCCCCGTTCAGCAGAACATCATCAGTCAATTAAAGACCTTCTCCTGTTACTCGTGCGATGAATCATTTCTGGATCGACGAAGTACTCTTAATCACATAAGACAACACATGCCGGATTTGAGATCGTACACTTGTGTTGCTTGTCTCACCGAATTTCCCGATCGGTCTACCTACAAACAACACTGCGAAGCTTCATTTGAATGCGCTATGAAGATCGCTTTGGTTGTACCAGTGCAAGGGACAGAGAAATACTTCACCTGCAACATGTGCCTGCGACCGTTGACCAACAGGAAAGATTTACTCACCCATTTATCCAAGCATTCTGATAAGCAGTATGAAGAACTCATGGCACCGTCCACAGCTCCACCAAAACTTACACCTATGGTTCCTCCTTCAACCTCGAATCTTTCGCGCCAACCTGACGTTCCAGGCATTCGGTCTCCATACGGAAACGGCGATCCCGCCTGTAATCACGAATGTGATTTATGCGGAATGATCTACAGATACAAACCAAACATGACGAAGCATCGTGAACTCTGCGCTAGTTTGCAACCAGAAGGTAGGACTTCTTACAAGTGTGTGGACTGTGGAATGACCTTCCTTGTCTTCAGCAAATTCCACAGCCACGTTACGACAGAGCACAGAAAGAAGGAGTTGAAGTGTCCTAAGTGTGCTGCTAAATTCCGTTCTCCGAGCGACTATCTCACACATCACGAGTATCACCGATTGGGTAAGAAAACCAAGGAACCTTCTTCTTCAAACTGGAATTATAAAAAGCAAGACGAAGAAGTAGAAGTAGAAGATAATCTGCAACACCAACAGAATCAAGGCAAATTCAGTTGTAACCTCTGCAGTCTGCATTTCTTAACACGAGCCGAGCTTGTTGAACATCGCAATTTGCACCTGAAAGTTAAAATCTACTCGTGTGTGATTTGCCGCAGCATGTTTAGTAGCGCCGGAGCCTTGGAGATTCATATGAAAGATCATGGGATTGACGATCCAACGGAGCGAAATGCGAACAGTTCATGTATGGAATACGGACAGGAGGAGACAGATTCTACTCCGTCCAAGAATTCTAATGCCTTACTTCGTAAGAACGAATGTTTTGAGTGTGGAAAGACCTTTTCCAATTATGCGAATCTAAGAAGACACAACAGGAACGCACACGAAGACGCGCGACGCGTCGACTGTTCGGAGTGTgtcaaaagtttcaaaaacaaGGAATCTTACGAAGATCATCTCCGATATGCACACGATCCCGAGAAGACTGTCTTGCAATGTCCTCAGTGTCCAAAAACTTTTGTCTTCCAGGCGTATTTGGATCTTCATTGCCGTAAAATGCACACCAATAAACCAGAAAAACCAACTGATCATCAATGCGAGGTGTGCGGTAAATCATTTCTCGAAGAATCTTCTCTAAAAATCCATCGCGGTTGGCACAATCGAGCCAATTCACGCTTCAGCCTTGAAAACTATGACAAAGATGGACTCTCCTTTTCGAGTGCACTTCCTGGCTCTTCCAAACCAGCGAAGGCGAGAAAGTCTTTCCCTAACTCTCCTCTAATACACCAGCAATTTAAGAAGCAATTCAAATTGCCTGAGCTCCAATGTCAGGTGTGCGACGACAAATTTGTCGACGTCTCTGAATTGAGAAAACACGTTTGGGACGTCCACTGCGCTCGTGCAACCAAAGTTGAAAAACCATTCGTTGTAGGAGACCTGCAATGTGAACTTTGCACAAACATCTTTCCTGATCAACAAAGTCTAGAATCTCACATGGAGTGGCACGAGCGCAACCCAATTTTGAACGACAATTATGCCGGGAAGTCCTTCCGCTGTAACGTTTGCGATAAATACTACAGTTCTCTGAAGATTCTAGCAAAGCATAAAAAGTTACACAAGCAGGTTACGCAGCCAACTTTGAAATTCCACTCAATTTCAATGAAGAGGCCGACTTGCAACACTTGTGGCAGATCCTTCACTGCCGAGTCTTCTCTCAAAAGACACAAGGCGATGTCAACCGAATGTCAATCTTATTTCTCAGCCAGACTTACTGATCAGGAAACAAGAAATTCAGTTCAAGATTCCAGCTTTAAAAAGAAACCTGTAACCTGTCATATTTGCAAGACAGTCTTCCCGAGTATGAGTATTTTGTATCAGCATAAACAGTTGGCCCATAAGCTGAATTTTAACAAAGATAGAAAGTCATCGAGCAATGAATGCGTCCCGTTAACTAGTAATGAAGGAGTTTCGTGCAACGTTTGTGGTAAGCAATTCCCTGGCCTCTCCAATCTCAAGCAGCACTTCACGATTAAGCACAAAAATGTTAGCCAGCATCCATGCACGATTGCCAATTGCAAAATGATTTTCTCCACGTCGCACGCTCTTAAAAATCATGAACTCACACACTCAAACATGATATACAGTTGCAGTCTCTGCGAAAGACACTTTTTCCACAAGGGAGCAATTGTCAAGCACGTCTTCAACGCCCACAAAGCCATCTACCAGACAACCGGAGACAAGGAGTCTCTTTTCAAGGAAACAGATTTGAGTACGTATGTCGTAAAAGGTGCATCTGGAACTGTTTGCCCGCGATGCAAAATCAAGTACCCAAATATTAAAGCTATGAAGATTCACTACTTCAAATTCCACGAGACGTTTGCTTAa
- Protein Sequence
- MNEIEELQGLESACRLCLTTDETRSSIFGTPVSLVPLTEKIRSCVSVQILRDDKLSTLICITCVNKVNQWHQYKELCLQSQGKLEEWLSKQSTPISVVTIKKEPDTQESGENQKSPDKDKEPEEIPVTDGPSNEIETPMEIDDTPAEKTIELETRGSSQRRLSKEVGSEDKQADIVSIKIEPPDVEEVEEILETESPDEILLRNPLATTTNGKEDQIAEPDSTQKSASLSQRVKKKVRRGPHTHFRGARIFKRKCLHCQINLHSKTSYAKHMARFHSVVNNAPTTILKPLSARDATPEITEVPATSKSKRIANEVISLVDTSTEDAEELIEDVEEELENLGEDAPLTPVQQNIISQLKTFSCYSCDESFLDRRSTLNHIRQHMPDLRSYTCVACLTEFPDRSTYKQHCEASFECAMKIALVVPVQGTEKYFTCNMCLRPLTNRKDLLTHLSKHSDKQYEELMAPSTAPPKLTPMVPPSTSNLSRQPDVPGIRSPYGNGDPACNHECDLCGMIYRYKPNMTKHRELCASLQPEGRTSYKCVDCGMTFLVFSKFHSHVTTEHRKKELKCPKCAAKFRSPSDYLTHHEYHRLGKKTKEPSSSNWNYKKQDEEVEVEDNLQHQQNQGKFSCNLCSLHFLTRAELVEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIDDPTERNANSSCMEYGQEETDSTPSKNSNALLRKNECFECGKTFSNYANLRRHNRNAHEDARRVDCSECVKSFKNKESYEDHLRYAHDPEKTVLQCPQCPKTFVFQAYLDLHCRKMHTNKPEKPTDHQCEVCGKSFLEESSLKIHRGWHNRANSRFSLENYDKDGLSFSSALPGSSKPAKARKSFPNSPLIHQQFKKQFKLPELQCQVCDDKFVDVSELRKHVWDVHCARATKVEKPFVVGDLQCELCTNIFPDQQSLESHMEWHERNPILNDNYAGKSFRCNVCDKYYSSLKILAKHKKLHKQVTQPTLKFHSISMKRPTCNTCGRSFTAESSLKRHKAMSTECQSYFSARLTDQETRNSVQDSSFKKKPVTCHICKTVFPSMSILYQHKQLAHKLNFNKDRKSSSNECVPLTSNEGVSCNVCGKQFPGLSNLKQHFTIKHKNVSQHPCTIANCKMIFSTSHALKNHELTHSNMIYSCSLCERHFFHKGAIVKHVFNAHKAIYQTTGDKESLFKETDLSTYVVKGASGTVCPRCKIKYPNIKAMKIHYFKFHETFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389668;
- 90% Identity
- iTF_01393740;
- 80% Identity
- -