Sjap003413.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- -
- Assembly
- GCA_900474275.1
- Location
- UCOH01011762.1:83962-90870[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.5 2.5e+02 2.8 4.7 2 23 254 276 254 276 0.96 2 22 0.34 35 5.5 1.3 1 23 361 383 361 383 0.97 3 22 1.9 1.9e+02 3.2 0.3 1 19 390 408 390 408 0.97 4 22 0.0042 0.44 11.5 1.1 1 23 432 454 432 454 0.98 5 22 0.016 1.6 9.7 0.3 1 20 505 524 505 526 0.94 6 22 0.22 22 6.2 2.1 1 23 538 561 538 561 0.93 7 22 0.005 0.51 11.3 1.2 2 23 567 588 566 588 0.95 8 22 0.002 0.21 12.5 1.6 1 23 630 652 630 652 0.97 9 22 0.0007 0.073 14.0 0.1 1 23 658 680 658 680 0.97 10 22 1.7e-07 1.8e-05 25.4 0.5 2 23 718 740 718 740 0.96 11 22 0.0016 0.16 12.9 0.6 3 23 748 769 746 769 0.95 12 22 3.7e-05 0.0039 18.0 0.4 2 23 777 799 776 799 0.96 13 22 0.0031 0.32 12.0 0.3 1 23 809 831 809 831 0.93 14 22 0.16 17 6.5 0.0 2 19 888 905 887 906 0.95 15 22 0.0017 0.18 12.7 0.0 2 23 927 948 926 948 0.96 16 22 0.0095 0.98 10.4 2.1 1 23 963 985 963 985 0.97 17 22 0.00016 0.016 16.0 0.9 2 20 1004 1022 1004 1024 0.93 18 22 0.1 11 7.2 0.7 2 23 1056 1078 1055 1078 0.90 19 22 0.00021 0.022 15.6 0.4 2 23 1103 1125 1102 1125 0.92 20 22 0.0028 0.29 12.1 2.0 1 23 1131 1155 1131 1155 0.95 21 22 0.2 20 6.3 2.7 1 23 1160 1183 1160 1183 0.91 22 22 0.62 64 4.7 0.6 2 23 1214 1236 1213 1236 0.93
Sequence Information
- Coding Sequence
- ATGGAGGAAATTGAAGAGTTGCAAGGCTTCGAAAGTGCTTGCAGACTTTGTTTAACAACAGATGAAACAAGATCATCCATTTTTGGAACTGCACAATCCTTAGTGCCACTGACagaaaaaatacaaagttGTGTTTCTGTCCAGATTTCACGGGATGACAAGTTATCCACTTTAATTTGCATAACTTGTGTTAACAAAGTTAACCAATGGCACCAGTACAAACAATTATGTCTCCAGTCTCAGGACAAATTAAAGGATTGGTTCGCCAAACAATCAACACCTATTTCGATCGTGACTGTAAAGAAAGAACCGAATACTCAAGAATCCGAGGAAAACCAAAAATCCCCGGATAAGGATAAAGAACCAGAAGTAATACCAGTTACCGATGGACCCAGCAACGAAATTGATTCTCCTATGGAAATTGACGATACACCGATCGAAGAAACAGTCGAACCGGAAACCGAAGGCAATTCGCAGAGAAGATCGTCCGAAGAAGCTGTTAGCGAAGATAAGCAAGCCGATACTGTACCGATTAAAGTCGAACCTCCAGATGCAGAGGAAGCCGAGGAAATTTTGGAGAGCGAATTTCCTGTGGGAATATTACTCCGAAATCCCTTAGCGACGTCCACGAACAGTAAAGAGGACCAAATAGCAGAACCCGATTCAACCCAGAAAAGTGCATCATTAACACAGAGAGGGAAGAAGAAGGTTCGGCGAGGTCCTCACACTCACTTCAGAGGTGCTCgcattttcaaaagaaaatgcCTCCATTGTCAAATCAATCTCCATTCCAAAACATCTTACGCAAAGCACATGGCGAGGTTTCACAGTGTTGTCAACAACGCCGCCACAACGATATTAAAACCACTGAGTGCTAGAGTCGCAACGCCTGAAATCACTGAGATTCCAGCAGCCTCCAAGTCGAGAAGGGTTTCAAACGAAGTAATTTCTGTAGTTGACACTAGTACTGAGGATGCTGAAGAAGAATTGATCGAAGACGTAGAAGAGGAATTGGAAAATTTGGGTGAAGATGCGCCCTTAACTCCCGTTCAGCAAAACATCATCAGTCAATTAAAGACCTTCTCCTGTTACTCGTGTGACGAATCGTTTCTAGATCGACGGAGTACTCTCAATCACATCAGGCAACACATGCCAGATTTGAGATCTTACACTTGTGTTGCTTGTCTCACTGAATTCCCCGATCGGTCCACCTACAAACAACACTGCGAAGCCTCGTTTGAATGCGCAATGAAGATAGCTTTGGTTGTTCCGGTGCAAGGGATAGAGAAATACTTCACCTGCAACATGTGCCTGCGACCCTTAACCAACAGGAAGGATTTACTCACCCACTTATCCAAGCACTCGGACAAACAGTATGAGGAGCTCATGGCACCTTCAGCAGCTCCACCAAAACTTACACCTATGATTCCTCCTTCAACCTCGAGTTTTCCACGCCAACCTGATGTTCCAGGAATTCAGTCTCCGTATGGTAACGGTGATCCCGCCTGTAATCATGAATGTGATTTATGCGGAATGATCTACAGATACAAACCAAACATGTCGAAGCATCGTGAACTGTGCGCTAGTTTGAAACCGGAAAGCAGAACTTCTTACAAGTGTGTTGACTGTGGAATGACCTTCCTCGTCTTCAGCAAATTCCACAGCCACGTTACCACCGAGCACAGAAAGAAGGAGTTGAAGTGTCCGAAGTGTGCTGCTAAATTCCGTTCCCCGAGCGACTACCTCACACATCACGAGTATCATCGAATGGGTAAGAAGACCAAGGAACCTTCTTCTGCTAACTGGAATTACAAGAAGCAAGAAGACAACGAAGAACTGGAGATCGAAGTAGAAGATAATCTCCAACACCAACAAAATAAACGCAAATTCAGCTGCAACCTCTGCAGTATGCATTTCTCATCACGAGTTGAACTCGTCGAACATCGTAACTTGCACCTGAAAGTTAAGATCTACTCATGTGTCATTTGTCGCAGTATGTTTAGTAGTGCTGGAGCCTTGGAGATTCACATGAAAGACCATGGGATTGACGATCCAACTGAGCGAAATGCCAACAGTTCTTGTATGGAATACGGACAGGAGGAGACAAGTTCATCTCCGATGAAGAATTCTAAAACTTCACCTCGCAAGAACGAGTGTTTCGAATGTGGAAAGAGCTTTTCCAACTACGCAAATCTAAGAAGACATATCAGGAACGCACACGAAGACGCGCGACGCATTGATTGCACGGAGTGTGTCAGAACTTTCAAGAACAAGGAGTCTTATGACGAGCATCTCCGAAATTCACACGATCCCGAGAAGACTGTCTTGCAATGTCCCCAGTGTCCAAAAACCTTCGTCTTCCAGGCGAATCTGGATCTTCATCGCCGTAATTCGCATAACAATAAACCAGAGAAGCCAGCTAATCATGAATGCGAAGTGTGCGGTAAATCATTTCTGGAGGAatcttctctaaaaattcaccGCGGTTGGCACAATCGAGCCAATTCGCGTTTCAACCTTGAAAACTATGAGAAAGATCGACTCTCCTTCCCAAATACAGTTCCTAGTTCTTCCAAACCAGCGAAGGCGAGAAAATCTTTCCCTAACTCTTCTCCTGGTATTCAACAGCAATTCCAGCATCAGTTGCATTTGCCTGAGCTCCAATGTCAGGTGTGCGACGACAAATTTGTTGACGTCGCTGAATTAAGAAAGCACGTCTGGGATGTTCACTGTGCTCGTGCAACCAAAGTCGAAAAACCGTTCGTTGTCGGAGACTTGCAGTGTGAACTTTGCACAAACATCTTCCCTGATCAACAAAGTCTAGAAGCCCACATGGAGTGGCACGAGCGCAATCCAATTTTGAGCGACAACTACACCGGAAAGTCCTTCCGCTGTGACGTTTGTGATAAATACTACAGTTCTCTGAAGATTCTCACCAAGCATAAAAAGTTACACAAGCAGGTTTCGCAGCCGACTTTGAAGTTTCAATCGCTTTCAATAAAACGACCGACTTGCCACACTTGCGGCAGATCCTTCACTGCTGAGTCTTCTCTCAAAAGACACAAGGCGATGTCACCTGAGTGTCAAACTTATTTCTCGGGAAGACTTACTGATCAGCAACCAAGACATTCTGATCAGGATTCCAGCTATAAGAAGAAACCTGTAACCTGCCATATTTGTAAGACAGTCTTCCCGAGTATGAGTATTTTGTATCAGCATAAACAGTTGGCGCACAAGGTGCGTTTTaataaagatagaaagtcaCCGAGCAATGAGTGCGTTCCTGTGGCTAATAATGAAGGAGTTTCGTGCAACGTTTGCGGTAAGCAATTCCCTGGCCTCTCCAATCTTAAGCAGCACTTCACGATTAAGCACAAAAATGTTAGCCAGCATCCCTGCACGATTGGCAATTGCAAAATGATTTTCTCCACGTCGCACGcccttaaaaatcatgaacTCACACACTCAAACATGATATACAGTTGCAGTCTCTGCGAAAGACACTTTTTCCACAAGGGAGCAATCGTCAAGCACGTCTTCAACGCCCACAAAGCTATCTATCAGGCTACCGGAGACAAGGAGTCTCTGTTCAAGGAAACAGATTTGAGTACGTATGTCGTAAAAGGTGCGACTGGAACTGTTTGCCCAAGATGCAAAATCAAGTATCCAAATATTAAAGCTATGAAGATTCActacttcaaattccatgagacGTTTGCTTAA
- Protein Sequence
- MEEIEELQGFESACRLCLTTDETRSSIFGTAQSLVPLTEKIQSCVSVQISRDDKLSTLICITCVNKVNQWHQYKQLCLQSQDKLKDWFAKQSTPISIVTVKKEPNTQESEENQKSPDKDKEPEVIPVTDGPSNEIDSPMEIDDTPIEETVEPETEGNSQRRSSEEAVSEDKQADTVPIKVEPPDAEEAEEILESEFPVGILLRNPLATSTNSKEDQIAEPDSTQKSASLTQRGKKKVRRGPHTHFRGARIFKRKCLHCQINLHSKTSYAKHMARFHSVVNNAATTILKPLSARVATPEITEIPAASKSRRVSNEVISVVDTSTEDAEEELIEDVEEELENLGEDAPLTPVQQNIISQLKTFSCYSCDESFLDRRSTLNHIRQHMPDLRSYTCVACLTEFPDRSTYKQHCEASFECAMKIALVVPVQGIEKYFTCNMCLRPLTNRKDLLTHLSKHSDKQYEELMAPSAAPPKLTPMIPPSTSSFPRQPDVPGIQSPYGNGDPACNHECDLCGMIYRYKPNMSKHRELCASLKPESRTSYKCVDCGMTFLVFSKFHSHVTTEHRKKELKCPKCAAKFRSPSDYLTHHEYHRMGKKTKEPSSANWNYKKQEDNEELEIEVEDNLQHQQNKRKFSCNLCSMHFSSRVELVEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIDDPTERNANSSCMEYGQEETSSSPMKNSKTSPRKNECFECGKSFSNYANLRRHIRNAHEDARRIDCTECVRTFKNKESYDEHLRNSHDPEKTVLQCPQCPKTFVFQANLDLHRRNSHNNKPEKPANHECEVCGKSFLEESSLKIHRGWHNRANSRFNLENYEKDRLSFPNTVPSSSKPAKARKSFPNSSPGIQQQFQHQLHLPELQCQVCDDKFVDVAELRKHVWDVHCARATKVEKPFVVGDLQCELCTNIFPDQQSLEAHMEWHERNPILSDNYTGKSFRCDVCDKYYSSLKILTKHKKLHKQVSQPTLKFQSLSIKRPTCHTCGRSFTAESSLKRHKAMSPECQTYFSGRLTDQQPRHSDQDSSYKKKPVTCHICKTVFPSMSILYQHKQLAHKVRFNKDRKSPSNECVPVANNEGVSCNVCGKQFPGLSNLKQHFTIKHKNVSQHPCTIGNCKMIFSTSHALKNHELTHSNMIYSCSLCERHFFHKGAIVKHVFNAHKAIYQATGDKESLFKETDLSTYVVKGATGTVCPRCKIKYPNIKAMKIHYFKFHETFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389668;
- 90% Identity
- iTF_01393740;
- 80% Identity
- -