Sito030793.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010000121.1:672232-679786[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.4 3.3e+02 2.8 4.7 2 23 254 276 254 276 0.96 2 22 0.33 45 5.5 1.3 1 23 360 382 360 382 0.97 3 22 1.8 2.5e+02 3.2 0.3 1 19 389 407 389 407 0.97 4 22 0.0041 0.56 11.5 1.1 1 23 431 453 431 453 0.98 5 22 0.016 2.1 9.7 0.3 1 20 504 523 504 525 0.94 6 22 0.57 77 4.8 1.6 1 23 537 560 537 560 0.80 7 22 0.0049 0.66 11.3 1.2 2 23 566 587 565 587 0.95 8 22 0.0015 0.21 12.9 1.6 1 23 629 651 629 651 0.97 9 22 0.00069 0.094 14.0 0.1 1 23 657 679 657 679 0.97 10 22 1.7e-07 2.3e-05 25.4 0.5 2 23 717 739 717 739 0.96 11 22 0.00035 0.047 14.9 0.5 3 23 747 768 746 768 0.96 12 22 4.4e-05 0.0059 17.8 1.6 2 23 776 798 775 798 0.96 13 22 0.003 0.41 12.0 0.3 1 23 807 829 807 829 0.93 14 22 0.16 22 6.5 0.0 2 19 886 903 885 904 0.95 15 22 0.089 12 7.3 0.0 2 23 925 946 924 946 0.96 16 22 0.0094 1.3 10.4 2.1 1 23 961 983 961 983 0.97 17 22 0.00016 0.021 16.0 0.9 2 20 1002 1020 1002 1022 0.93 18 22 0.1 14 7.2 0.7 2 23 1054 1076 1053 1076 0.90 19 22 0.00011 0.015 16.5 0.4 2 23 1101 1123 1100 1123 0.92 20 22 0.0028 0.38 12.1 2.0 1 23 1129 1153 1129 1153 0.95 21 22 0.19 26 6.3 2.7 1 23 1158 1181 1158 1181 0.91 22 22 0.61 83 4.7 0.6 2 23 1212 1234 1211 1234 0.93
Sequence Information
- Coding Sequence
- ATGAACGAAATTGAAGAGTTGCAAGGCTTAGAAAGTGCTTGTAGACTTTGTTTAACGACAGATGAAACAAGATCATCCATTTTTGGAACTGCACTCTCCTTAGTGCCACTGACAGAAAAAATACAAAGTTGTGTTTCTGTTCAGATTTCACGGGATGACAAGTTATCCACTTTAATTTGCATAAATTGTGTTAACAAAGTCAACCAATGGCACCAATACAAAGAACTGTGTCTCCAGTCTCAGGACAAATTAAAGGAATGGTTAGCCAAACAATCAACACCTATTTCGATCTTAACCGTAAAGAAAGAACCGGATACTCAAGAATCCGAGGAAAATCAAAAATCCCCTGATAAGGATAAAGAACCAGAGGAGATACTAGTGACAGATGGACCCAGCAACGAAATTGAAGCTCCTATGGAAATCGACGATACACCAACCGAGGAAACAGTCGAACCGGAAACCAAAGGCAGTTCGCAGAAAAGTTCGTCCGAAGAAGTTGTTAGCGAAGATAAGCAAGCCGATACCTTGCCGATTAAAGTCGAACCTCCAGATGTAGAGGAAGTCGAAGAAATTTTGGAGAGCGAATCTCCTGTGGGAATATTACTCCGAAATCCCTTGGCGACGACCATCAACGGTAAAGAAGACCAAATAGCAGAACCCGATTCGACGCAGAAAAGTGCATCATTATCACAGAGAGGGAAGAAAAAGGTTCGGAGAGGTCCTCACACTCACTTCAGAGGAGCACGCATTTTCAAAAGAAAATGCCTTCATTGTCAAATCAACCTCCATTCCAAAACATCTTACGCGAAGCACATGGCGAGGTTTCACAGCGTCGTGAACAACGCCGCCACAACAATATTAAAACCACTGAGTGCAAGAGTCGCAACACCTGAAATTTCTGAGATTCCAGCAGCTTCCAAGCCGAAAAGGGTTGCAAACGAAGTGATTTCTGTAGTTGACACTAGTACCGAGGATGCTGAAGAATTGATCGAAGACGTGGAAGAGGAATTGGAAAATTTGGGTGAAGACGCGCCCTTAACTCCCGTTCAGCAAAACATCATCAGTCAATTAAAGACCTTCTCCTGTTACTCGTGTGATGAATCCTTTCTGGATCGACGAAGTACTCTCAACCACATAAGGCAACACATGCCAGATTTGAGATCTTACACTTGTGTTGCTTGTCTCACTGAATTCCCCGATCGGTCTACTTACAAACAACACTGCGAAGCTTCATTTGAATGCGCGATGAAGATCGCTTTGGTTGTTCCGGTGCAAGGGACGGAGAAATACTTCACCTGCAACATGTGCCTGCGACCCTTGACCAACAGGAAGGATTTACTCACCCACTTGTCCAAGCATTCGGACAAGCAGTACGAAGAGCTCATGGCACCTTCAGCAGCTCCACCAAAACTTACACCTATGGTTCCTCCTTCAACCTCGAACTTTCCGCGCCAACCTGACGTTCCAGGCATTCGGTCTCCGTATGGAAACGGTGATCCTGCCTGTAATCATGAGTGTGATTTATGCGGAATGATCTACAGATACAAACCAAACATGTCGAAGCATCGTGAACTGTGCGCCAGTTTGCAACCGGAAGGCAGGACTTCTTACAAGTGTGTCGACTGTGGAATGACCTTCCTCGTCTTCAGCAAATTCCACGGCCACGTTACGACCGAGCACAGAAAGAAGGAGTTGAAGTGTCCGAAGTGTGCTGCTAAATTCCGTTCCCCGAGCGACTACCTCACACATCACGAGTATCATCGAATGGGTAGGAAGATCAAGGAACCTTCTTCTGCAAACTGGAATTACAAGAAGCAAGAAGACCACGAAGAAGTGGAGATCGAAGTAGAAGATAATCTGCAACACCAACAAAACAAACGCAGATTCAGCTGCAACCTCTGCAGTCTGCATTTCTCATCACGAGCTGAACTCCTCGAACATCGTAATTTGCACCTGAAAGTTAAGATCTACTCGTGTGTGATTTGTCGCAGTATGTTTAGTAGCGCCGGAGCTTTGGAGATTCATATGAAAGACCATGGGATTGACGATCCAACTGAGCGAAATGCCAACAGTTCATGCATGGAATACGGACAGGAGGAGACAGGTTCGACTCCGACGAAGAATTCTAATGCTTCACTTCGCAAGAACGAGTGTTTCGAATGTGGAAAGAGCTTTTCCAACTACGCGAATCTAAGAAGACACATCAGGAACGCACACGAAGACGCGCGACGTGTTGACTGTTCGGAGTGTGTCAGAACTTTCAAAAACAAGGAGTCTTACGAAGAGCATCTCCGAAATGCACACGATCCCGAGAAGACTGTCTTGCAATGTCCTCAGTGTCCAAAAACCTTCGTCTTCCAGGTGAATCTGGATCATCATCGTCGCAATTCGCACAACAAACCAGACAAATCAACTAATCATGAATGCGAAGTGTGTGGTAAATCATTCCTGGAGGAATCTTCCCTAAAAATCCACCGCGGTTGGCACAATCGAGCCAATTCGCGTTTCAGCCTTGAAAACTATGAAAAAGATCGACTCTCCTTGCCAAATGCACTTCCCAGTTCTTCCAAACCAGCGAAGGCGAGAAAGTCTTTCCCTAACTCTTCTCCTGTAGCTCACCAGCAATTTCAGCATCAACTACAATTGCCTGAGCTCCAATGTCAGGTGTGCGACGACAAATTTGTCGACGTCGCTGAATTGAGAAAGCACGTGTGGGATGTTCACTGCGCTCGTGCAACCAAAGTCGAAAAACCGTTCGTTGTCGGAGACTTGCAGTGTGAACTTTGCACAAACATCCTTCCTGATCAACAAAGTCTAGAATCTCACATGGAGTGGCACGAGCGCAATCCAATTTTGAACGACAACTACACCGGAAAGTCCTTCCGCTGTGACGTTTGCGATAAATACTACAGTTCTCTGAAGATCCTTACGAAGCATAAAAAGTTACACAAGCAGGTTTCGCAGCCGAATTTGAAATTTCAATCACTTTCAGTAAAACGACCGACTTGCCACACTTGCGGCAGATCCTTCACTGCCGAGTCTTCTCTCAAAAGACACAAGGCGATGTCACCCGAGTGTCAATCTTATTTCTCGGGAAGATTTACTGATCAGCAACCAAGAAATTCTGATCAAGGTTCCAGCTATAAGAAGAAACCTGTAACTTGTCATATTTGCAAGACAGTCTTTCCGAGTATGAGTATTTTGTATCAGCATAAACAGTTGGCGCACAAGGTGCGTTTTAATAAAGATAGAAAGTCACCGAGCAATGAGTTCGTCCCAGTGGCTAGTAATGAAGGAGTTTCGTGCAACATTTGCGGTAAGCAATTCCCTGGCCTCTCCAATCTTAAGCAGCACTTCACGATTAAGCACAAAAATGTTAGCCAGCATCCATGCACGATTGGCAATTGCAAAATGATTTTCTCCACGTCGCACGCTCTTAAAAATCATGAACTCACACACTCAAACATGATATACAGTTGCAGTCTCTGCGAAAGACACTTTTTCCACAAGGGAGCAATCGTCAAGCACGTCTTCAACGCTCACAAAGCCATCTATCAGGCTACCGGAGACAAGGAGTCTCTTTTCAAGGAAACAGATTTGAGTACGTATGTCGTAAAAGGTGCGACTGGAACTGTTTGCCCGCGATGCAAAATCAAGTATCCAAATATTAAAGCTATGAAGATTCACTACTTCAAATTCCACGAGACGTTTGCTTAA
- Protein Sequence
- MNEIEELQGLESACRLCLTTDETRSSIFGTALSLVPLTEKIQSCVSVQISRDDKLSTLICINCVNKVNQWHQYKELCLQSQDKLKEWLAKQSTPISILTVKKEPDTQESEENQKSPDKDKEPEEILVTDGPSNEIEAPMEIDDTPTEETVEPETKGSSQKSSSEEVVSEDKQADTLPIKVEPPDVEEVEEILESESPVGILLRNPLATTINGKEDQIAEPDSTQKSASLSQRGKKKVRRGPHTHFRGARIFKRKCLHCQINLHSKTSYAKHMARFHSVVNNAATTILKPLSARVATPEISEIPAASKPKRVANEVISVVDTSTEDAEELIEDVEEELENLGEDAPLTPVQQNIISQLKTFSCYSCDESFLDRRSTLNHIRQHMPDLRSYTCVACLTEFPDRSTYKQHCEASFECAMKIALVVPVQGTEKYFTCNMCLRPLTNRKDLLTHLSKHSDKQYEELMAPSAAPPKLTPMVPPSTSNFPRQPDVPGIRSPYGNGDPACNHECDLCGMIYRYKPNMSKHRELCASLQPEGRTSYKCVDCGMTFLVFSKFHGHVTTEHRKKELKCPKCAAKFRSPSDYLTHHEYHRMGRKIKEPSSANWNYKKQEDHEEVEIEVEDNLQHQQNKRRFSCNLCSLHFSSRAELLEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIDDPTERNANSSCMEYGQEETGSTPTKNSNASLRKNECFECGKSFSNYANLRRHIRNAHEDARRVDCSECVRTFKNKESYEEHLRNAHDPEKTVLQCPQCPKTFVFQVNLDHHRRNSHNKPDKSTNHECEVCGKSFLEESSLKIHRGWHNRANSRFSLENYEKDRLSLPNALPSSSKPAKARKSFPNSSPVAHQQFQHQLQLPELQCQVCDDKFVDVAELRKHVWDVHCARATKVEKPFVVGDLQCELCTNILPDQQSLESHMEWHERNPILNDNYTGKSFRCDVCDKYYSSLKILTKHKKLHKQVSQPNLKFQSLSVKRPTCHTCGRSFTAESSLKRHKAMSPECQSYFSGRFTDQQPRNSDQGSSYKKKPVTCHICKTVFPSMSILYQHKQLAHKVRFNKDRKSPSNEFVPVASNEGVSCNICGKQFPGLSNLKQHFTIKHKNVSQHPCTIGNCKMIFSTSHALKNHELTHSNMIYSCSLCERHFFHKGAIVKHVFNAHKAIYQATGDKESLFKETDLSTYVVKGATGTVCPRCKIKYPNIKAMKIHYFKFHETFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389668;
- 90% Identity
- iTF_01393740;
- 80% Identity
- -