Sito027497.1
Basic Information
- Insect
- Synergus itoensis
- Gene Symbol
- -
- Assembly
- GCA_904066005.1
- Location
- CAJFCP010000714.1:392328-400022[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.1 14 7.1 0.4 3 21 8 27 6 28 0.85 2 14 5.9 8e+02 1.6 0.0 2 20 34 52 33 53 0.85 3 14 4 5.4e+02 2.1 0.3 1 12 228 239 228 248 0.88 4 14 1 1.4e+02 4.0 2.2 1 20 360 379 360 381 0.94 5 14 7.4e-05 0.01 17.0 0.4 3 23 387 407 385 407 0.97 6 14 4.4e-05 0.0061 17.7 1.5 1 23 418 440 418 440 0.97 7 14 0.0018 0.25 12.7 0.5 1 23 459 480 459 480 0.91 8 14 0.0023 0.31 12.3 0.0 2 23 486 507 485 507 0.95 9 14 4.6e-05 0.0063 17.7 4.8 1 23 553 575 553 575 0.99 10 14 2e-06 0.00027 22.0 3.7 1 23 581 603 581 603 0.96 11 14 0.00031 0.042 15.1 3.3 1 23 609 631 609 631 0.97 12 14 1.4e-06 0.00019 22.5 0.8 1 23 637 659 637 659 0.98 13 14 0.00021 0.029 15.6 0.4 1 23 663 685 663 685 0.98 14 14 0.00024 0.033 15.4 0.2 1 23 693 715 693 715 0.98
Sequence Information
- Coding Sequence
- ATGGGGTCGTTGAATTTAGTTTGTCCGATGTGTTGTGGAGAGACTTTTCAGAGTTCGCAGTCGCTGAAATATCATTTGCTTAGCATGACGGACAATTTATATTGTCCAGGATGTTCCGAAAGATCGGATTCTGTTTTGGCTTTGATTCAACATCTGGATTTTTGTGGACAATCGAGCGATTCCGATGTGAAGGAGAGGAAATTTAAATTGAAGGAGAAGACGAAAGAGGACAATCTGAAAACCGTGCAGGTTTTGCTGAAGGATATTCCTTCCGACGCTGAATCCGAAGAGAATTTTGAAACTTTTGAGGCCGAGGACAACGAAGTCAAATCGATTTGTAAGGAGCGATCTATTCAAGTTGAACAACCAGTAAAATTAAAACAGCTGCCAAAAATCCGATCGGAGTCACAAGTGAACACGAAGATCGAAAAAGTGTTTGTGAAGATAGACAATTCAGTCGGGAAATCCCGAACACCCGATCCACTAATGGAAATTCCGAATTCAGCTGAGGAGGAGAAGCTGATGGAAAAGAATGTGATAGCAATTTTGCCCGATGGATCAGAAATTCTGAACGATGAGGAGACCACTTTGATTAGCATGGATCATATTAATGTTCAAGAATTGGACGAGGCAAGGTTCATGAGAGTGAAACAAGAGTTGTGTGAGGAATCAGATTCTCTCTACAGTTGCAGCAGCTGTTCGATGAGTTTTAATTCAGTCCTCGACCACATAAAGCAATACCACGATGGCCAGGAAGTCGTTTTGGAAATGGCAGAACAGCAGTACGAAGAATTGACAACTCCACACACGTCGAACCAGGTCGAGGAAACAAATTCCAAAGGTTCTAAGCGTCCTCGTCAAGCAATGAACACTCTCCGAACCGAAGAATGCATCGACAACGAAGGTCGACTTTACACCAGAAAAGTTGTTCAGATTGAGAGATTTTGGGATCCGCCACCAGTCACGACAAAATCTTCGATGATTGAGAAATTTTTCTCCAACGCCGAGGGCGTCAAGGTGAGAGAGAAAAACGAAGCACCGACTCCAGCAGCAGCAGCAGCAACAGCAACTCGAGTTTACCGTTGCAGCCAATGCATGGAACAATTTTCGAAATTATCGCAAATTCGAATGCACACTTGCAATCGAGGCACCAAGCATTGTACTATTTGTGATCTGGCTTTCGTGAATGTGAAGGCCTTACAAGTTCACATGAAAGTTCACGAGGGCGATGACGGCAATCAGCCCAGATCTTTTATCTGCGGAATTTGTGGAACCGAGTTCTCGTCTCATAAAAGTTTGAGACTGCATTCTAGAATGCACGCACCCGTTCGAGCAAGACACGTGGAGGCACCGGAAGGAACTCAAAATGCGACTTTTACTTGCTTCGAGTGTGGAAAGACATTCTCGGAATCTTATCGAGCTGTGCACATGGCCCTTCACACTGGCGATTCCGTCACTTGTGCGGTTTGTAACCGGAAATTTGATTCTGCTGACAGTTTGGCGATGCACGCTGCCGTTCATATGGAAACTAATCAGCCGCAATCGCCAACTCCGATCGGAGATTCAATGACGATGTCCACTTCGACGGAATCGCCAACAACGACGACGAATACGACAACAGTTGCTGAATCGGCCGAGATTCAGAATCAGAAACCGTATCAGTGCCAACATTGCGGTAGAAGATTTACCAGACCGCATGAAAAAGTGAAGCACGAAAGGATTCACACCGGGGAAAAACCTCACGCCTGCGAAGTCTGTGGAAAAACTTTCCGAGTCTCCTACTGCCTCACCCTTCATATGAGAACTCACACCGGAGTTCGTCCCTATGCCTGCCCACATTGTGAAAAACGTTTTAAGGCTTCTTCGGTCTACAATCATCATCTTCTTACTCACGGGGACGTTCGGGCCTACACTTGTCCCTATTGTCCCAAGACTTTCAAAACCCGAGTTCAACTCGCAGGACACAAAAACAGCCACACGAAACCCTTCCATTGTACCGAATGTTCGCGACCTTTTGCCTCACTCTATGCGGTTCGTGCTCATATTGAAACGCACAAAAAGGACAACAATCTCAAATTCACTTGCTATATTTGTGGAGCTTCTTACGGAAGAGCTTTTGCGCTTAAGGATCACTTGAAACAACATGGGACGGAAATACAACAGACTCCGGAACCTGCGAGGGAGGAGGAAGTGCAGGAAGGGGAGGAATATGTTCTCGCAGAGGAGGCGGAAGTCGAGGAAGAAGAACTCGTTATTCCCTCTCCTCTTCCAGTTCAACAGTCTTCGGGAGCTGAATCTGAATAA
- Protein Sequence
- MGSLNLVCPMCCGETFQSSQSLKYHLLSMTDNLYCPGCSERSDSVLALIQHLDFCGQSSDSDVKERKFKLKEKTKEDNLKTVQVLLKDIPSDAESEENFETFEAEDNEVKSICKERSIQVEQPVKLKQLPKIRSESQVNTKIEKVFVKIDNSVGKSRTPDPLMEIPNSAEEEKLMEKNVIAILPDGSEILNDEETTLISMDHINVQELDEARFMRVKQELCEESDSLYSCSSCSMSFNSVLDHIKQYHDGQEVVLEMAEQQYEELTTPHTSNQVEETNSKGSKRPRQAMNTLRTEECIDNEGRLYTRKVVQIERFWDPPPVTTKSSMIEKFFSNAEGVKVREKNEAPTPAAAAATATRVYRCSQCMEQFSKLSQIRMHTCNRGTKHCTICDLAFVNVKALQVHMKVHEGDDGNQPRSFICGICGTEFSSHKSLRLHSRMHAPVRARHVEAPEGTQNATFTCFECGKTFSESYRAVHMALHTGDSVTCAVCNRKFDSADSLAMHAAVHMETNQPQSPTPIGDSMTMSTSTESPTTTTNTTTVAESAEIQNQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACPHCEKRFKASSVYNHHLLTHGDVRAYTCPYCPKTFKTRVQLAGHKNSHTKPFHCTECSRPFASLYAVRAHIETHKKDNNLKFTCYICGASYGRAFALKDHLKQHGTEIQQTPEPAREEEVQEGEEYVLAEEAEVEEEELVIPSPLPVQQSSGAESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389676; iTF_01392978; iTF_00980373; iTF_00200990; iTF_01394583; iTF_01392228; iTF_01393744;
- 90% Identity
- iTF_01389676;
- 80% Identity
- -