Most000129.1
Basic Information
- Insect
- Melikaiella ostensackeni
- Gene Symbol
- -
- Assembly
- GCA_032362435.1
- Location
- JAUMHM010000001.1:1267677-1287698[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.091 30 7.6 0.6 3 21 8 27 6 28 0.85 2 14 1.8 6e+02 3.5 0.0 2 20 34 52 33 54 0.90 3 14 4.7 1.5e+03 2.2 0.3 1 12 227 238 227 247 0.88 4 14 0.83 2.7e+02 4.5 2.2 1 21 356 376 356 377 0.94 5 14 1.3e-05 0.0042 19.7 0.1 2 23 382 403 381 403 0.97 6 14 2.9e-05 0.0095 18.6 1.5 1 23 414 436 414 436 0.98 7 14 0.0033 1.1 12.1 0.2 1 23 455 476 455 476 0.93 8 14 0.0027 0.88 12.4 0.0 2 23 482 503 481 503 0.95 9 14 5.5e-05 0.018 17.7 4.8 1 23 547 569 547 569 0.99 10 14 2.4e-06 0.00078 22.0 3.7 1 23 575 597 575 597 0.96 11 14 0.00028 0.09 15.5 4.1 1 23 603 625 603 625 0.97 12 14 0.00024 0.079 15.7 0.4 1 16 631 646 631 647 0.94 13 14 0.00025 0.081 15.6 0.4 1 23 657 679 657 679 0.98 14 14 0.00045 0.15 14.8 0.2 1 23 687 709 687 709 0.97
Sequence Information
- Coding Sequence
- ATGGGGTCGTTGACTTTGGTTTGTCCGTTGTGTTGTGGAGAGACTTTTCACAATCCGCAGTCGCTGAAATATCATTTGCTTAGCATGACGGACAATTTATATTGTCCGGGATGTTCAGAAAGATTGGATTCTGTTTTGGCTTTGATTCGTCATCTGGATTCCTGTGGACAATCGAGTGATTTCGAGAAGAAGGAAGCGAAGTCCAATTCGAAGAAGGGAAAAAAGGGCACTTCAAAAACCGTGGAGGTTCTggtgaaagaaactCATTCCGAAGAGgaggaaaagaattttgaagaattagaaCCTGAAGACCGCGAAGTCGAATCAATTTGTGAGGAGCGATCAATTAAAGTAGAAAAACAAGaagtcccGAAAATCCGATCAGCTTCCAAAGTAACGACGAGAAAAGTCGAGAAAGTGTTCGTGAAGATCGacaataaaatcgaaaattcccgaACTCCCGATCCACTAATGGAAATTTCGAATTCAACCGAGGAGGAGAAATTCATCGAGAAGAACGTCATTGCAATTTTGCCCGACGGATCAGAAATTCTGAATGACGAAGTGAGCATGATCAGCATGGATCACGTCAATGTTCAGGAAATCGACGAATCGAGGCTCATGAGAGTTAAAGAAGAGTTGTGTgaggtaaaaaaagaaaaggAATCGGACTCACTCTACAGTTGTAGTAGTTGTTCAATGAGTTTCAATTCAGTTCTTGACCACATCAAACAATACCACGATGGACAAGAAGTCGTTTTGGAAATGGCGGAACAACAATATGAAGAATTGACAACTCCAAATGCATCCAATCAAGTTGAAGAATCCAATTCGAAAAGTTCGAAACGTCCTCGTCAGGCGATGAATACTCTTCGAACTGAGGAATGTATCGACAGCGAGGGAAGACTTTATACCAGAAAAGTTGTTCAGATCGAAAGATTTTGGGATCCACCACCAGTCGCAACAAAATCTTCAATGATAGAGAAATTTTTCTCCAACGCGGAAGGCGTcaaggtcagagaaaaaaaagaaacgtcaTCTGCCGCACCAGCCCCAAACCGAGTTTATCGTTGCAGCCAATGCATGGAGCAATTTCCGAAATTATCTGAGTTTCGAATGCACACTTGTAATCGGGGAAGCAAGGTTTGCAATGTTTGCGATTTGACTTTCGTCAACGCGAAGGCATTGCAAGTTCATATGAAACTTCACGAGAATGATGATGGTGATCAGCCGAGATCGTTTGTTTGTGGGATTTGTGGAACCGAATTTTCGTCCCATAAAAGTTTGAGACTGCATTCCAGAATGCACGCACCCGTTCGAGCGAGACATGTCGACGCACCGGAGGGAActcaaaatttgactttcaattGCCTCGAGTGCGgaaagaCATTTTCGGAATCGTATAGAGCAGTTCACATGGCTGTTCACACTGGCGATTCGGTGACTTGTGCGGTTTGCAACCGGAAATTTGATTCTGCGGATAGTTTGGCGATGCATGCGGCTGTTCATATGGAATCGAATCATTCGCAATCGCCAACTCCGATTGCCGATTCGGTAACGACTTCTACTTCGACGGAATCGACGACGACGAATACAATGACGGTTACTGAATCGGCAGCAATTCAGAATCAAAAACCTTATCAGTGCCAACATTGCGGGAGAAGATTTACGAGACCGCATGAAAAAGTCAAACATGAGAGGATTCACACGGGCGAGAAGCCTCACGCCTGCGAGGTCTGCGGAAAAACTTTTCGAGTCTCCTATTGCCTGACTCTTCACATGAGAACTCACACCGGCGTTCGTCCCTACGCCTGTCAACACTGTGGAAAACGTTTTAAAGCCTCTTCAGTCTATAATCATCATCTTCTTACCCACGGGGACGTTCGGGCCTACACTTGTCCCTATTGTcccaaaactttcaaaaccCGTGTTCAACTTGCGGGACAAAAAAATAGCCACACGAAACCCTTTCACTGTACCGAATGTTCGAGACCCTTCGCTTCTCTTTATGCAGTTCGGGCACATATTGAGACCCACAAAAAAGACAACAATCTCAAGTTCAGTTGCTATATTTGTGGAGCTTCGTATGGAAGGGCCTTCGCCCTCAAGGACCATTTGAAGCAACACGGAACAGATGTTCAACAAACGCCGGAACCTTCGCGGGAGGAAGAGGTTCAAGAAGGGGAGGAATTCGTTCTCGCTGAAGAGGCAGAAGTTGAGGAAATGGTAATTCCCTCTCCTCTTCCTGTTCAGCAGTCTTCGGGAGCTGAGTCTGAATAG
- Protein Sequence
- MGSLTLVCPLCCGETFHNPQSLKYHLLSMTDNLYCPGCSERLDSVLALIRHLDSCGQSSDFEKKEAKSNSKKGKKGTSKTVEVLVKETHSEEEEKNFEELEPEDREVESICEERSIKVEKQEVPKIRSASKVTTRKVEKVFVKIDNKIENSRTPDPLMEISNSTEEEKFIEKNVIAILPDGSEILNDEVSMISMDHVNVQEIDESRLMRVKEELCEVKKEKESDSLYSCSSCSMSFNSVLDHIKQYHDGQEVVLEMAEQQYEELTTPNASNQVEESNSKSSKRPRQAMNTLRTEECIDSEGRLYTRKVVQIERFWDPPPVATKSSMIEKFFSNAEGVKVREKKETSSAAPAPNRVYRCSQCMEQFPKLSEFRMHTCNRGSKVCNVCDLTFVNAKALQVHMKLHENDDGDQPRSFVCGICGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTQNLTFNCLECGKTFSESYRAVHMAVHTGDSVTCAVCNRKFDSADSLAMHAAVHMESNHSQSPTPIADSVTTSTSTESTTTNTMTVTESAAIQNQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGDVRAYTCPYCPKTFKTRVQLAGQKNSHTKPFHCTECSRPFASLYAVRAHIETHKKDNNLKFSCYICGASYGRAFALKDHLKQHGTDVQQTPEPSREEEVQEGEEFVLAEEAEVEEMVIPSPLPVQQSSGAESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01391420;
- 90% Identity
- iTF_00200990;
- 80% Identity
- -