Sjap018942.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- -
- Assembly
- GCA_900474275.1
- Location
- UCOH01005831.1:41507-46454[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.1 11 7.1 0.4 3 21 8 27 6 28 0.85 2 14 6 6.1e+02 1.6 0.0 2 20 34 52 33 53 0.85 3 14 4.1 4.2e+02 2.1 0.3 1 12 228 239 228 248 0.88 4 14 1.1 1.1e+02 4.0 2.2 1 20 358 377 358 379 0.94 5 14 8.1e-05 0.0083 16.9 0.5 3 23 385 405 383 405 0.97 6 14 4.5e-05 0.0046 17.7 1.5 1 23 416 438 416 438 0.97 7 14 0.0019 0.19 12.7 0.5 1 23 457 478 457 478 0.91 8 14 0.00036 0.037 14.9 0.1 2 23 484 505 483 505 0.95 9 14 4.7e-05 0.0049 17.7 4.8 1 23 551 573 551 573 0.99 10 14 2e-06 0.00021 22.0 3.7 1 23 579 601 579 601 0.96 11 14 0.00031 0.032 15.1 3.3 1 23 607 629 607 629 0.97 12 14 1.4e-06 0.00015 22.5 0.8 1 23 635 657 635 657 0.98 13 14 0.00021 0.022 15.6 0.4 1 23 661 683 661 683 0.98 14 14 0.00039 0.04 14.8 0.2 1 23 691 713 691 713 0.97
Sequence Information
- Coding Sequence
- ATGGGGTCGTTGAACTTAGTTTGTCCGATGTGTTGTGGAGAAACTTTTCAGAGTTCGCAGTCGCTGAAATATCATTTGCTTAGTATGACGGACAATTTATATTGTCCAGGATGTTCCGAAAGATCGGATTCTGTTTTGGCTTTGATTCAACATCTGGATTTTTGTGGACAATCGAGCGATTCCGAGGTGAAGGagacgaaatttaaattgaaggaGAAGACGAAAGAAGACAATCTAAAAACCGTGGAGATTTTGCTGAAGGATATTCCTTCCGAAGCCGAATCCGAGgagaattttgaaacttaTGAGGCCGAGGACAACGAAGTCAAATCAATTTGTGAGGAGCGATCTATTCAAGTTGAAGAACCAGtaaaagtGAAACAGCTACCAAAAATCCGATCGGAGTCACAAGTGAactcgaaaatcgaaaaagtaTTTGTGAAGATAGACAATACAGTCGGGAAATCCCGAACACCCGATCCACTAATGGAAATTCCGAATTCAGCTGAGGAGGACAAATTgatggaaaaaaatgtaatagcAATTTTGCCCGATGGATCAGAAATTCTGAACGATGAGGAGACCACTTTGATTAGCATGGATCATATTAATGTTGAGGAATTGGACGAGGCAGGGTTCATGAAAGTCAAGGAAGAGTTGTGTGAGGAAGCAGATTCTCTCTACAGTTGCAGCAGCTGTTCGATGAGTTTTAATTCAGTCCTTGACCACATAAAACAATACCACGATGGTCAGGAAGTCGTTTTGGAAATGGCAGAACAGCAGTACGAAGAATTGACAACTCCACACACGTCGAACCAGGTCGAGGAAACAAATTCCAAAGGTACGAAGCGTCCTCGCCAAGCAATGAACACTCTCCGAACCGAAGAATGCATCGACAACGAAGGTCGACTTTACACCAGAAAAGTTGTTCAGATAGAGAGATTTTGGGATCCGCCACCAGTAACGACAAAATCTTCGATgattgagaaatttttctctAACGCCGAGGGCGTCAAGGTGAGAGAGAAAGTCGAAGCACCGACTGCAGCAGTAACAGAAGCGACTCGAGTTTACCGTTGCAGCCAATGCATggaacaattttcaaaattatcgcAAATTCGAATGCACACTTGCAATCGAGGCACCAAGCATTGTACTATTTGCGATCTGGCTTTTGTGAATGTGAAGGCCTTACAAGTTCACATGAAAATTCACGAGGTCGATGGCAGCAATCAGCCCCGATCTTTTATCTGCGGAATTTGTGGAACCGAGTTCTCGTCTCATAAAAGTTTGAGACTGCATTCCAGAATGCACGCACCCGTCCGAGCAAGACACGTGGAGGCACCGGAAGGAACTCAAAATGCGACTTTTACTTGCTTCGAGTGTGGAAAGACATTCTCGGAATCTTATCGAGCTGTGCACATGGCCCTTCACACTGGCGATTCCGTCACTTGTACGATTTGCAACCGGAAATTTGATTCTGCCGACAGTTTGGCGATGCACGCTGCCGTTCATATGGATACTAATCAGCCGCAATCGCCAACTCCGATCGGAGATTCAGTGACGATGTCCACTTCGATGGAATCGACAACTACGACGACTAATACGACAACAGCTGCTGAATCGGCTgagattcaaaatcaaaaaccGTATCAGTGCCAACATTGCGGTAGAAGATTTACCAGACCCCATGAAAAAGTGAAGCATGAGAGGATTCACACGGGGGAAAAACCTCACGCCTGCGaagtcTGTGGAAAAACTTTCAGAGTCTCCTACTGCCTCACCCTTCATATGAGAACTCACACTGGAGTTCGTCCCTACGCCTGTCCACATTGTGAAAAACGCTTTAAGGCTTCTTCGGTCTACAATCATCATCTTCTTACTCACGGGGACGTTCGGGCCTATACTTGTCCCTATTGTCCTAAGACTTTCAAAACCCGAGTTCAACTTGCGGGGCATAAAAACAGCCACACAAAACCCTTCCACTGTACCGAATGCTCGCGACCTTTTGCCTCGCTCTATGCGGTTCGCGCTCATATTGAGACGCACAAAAAAGACAACAATCTGAAATTCAGTTGCTATATTTGTGGAGCTTCTTATGGAAGAGCTTTTGCGCTTAAAGATCACTTGAAGCAACACGGGACGGAAATACAACAGACTCCGGAACCTGCGAGGGAGGAGGAAGTACAGGAAGGCGAGGAATATGTTCTCGCAGAGGAGGCGGAGGTCGAGGAAGAAGAACTTGTTATTCCCTCTCCTCTTCCAGTTCAACAGGATTCGGGAGCTGAATctgattaa
- Protein Sequence
- MGSLNLVCPMCCGETFQSSQSLKYHLLSMTDNLYCPGCSERSDSVLALIQHLDFCGQSSDSEVKETKFKLKEKTKEDNLKTVEILLKDIPSEAESEENFETYEAEDNEVKSICEERSIQVEEPVKVKQLPKIRSESQVNSKIEKVFVKIDNTVGKSRTPDPLMEIPNSAEEDKLMEKNVIAILPDGSEILNDEETTLISMDHINVEELDEAGFMKVKEELCEEADSLYSCSSCSMSFNSVLDHIKQYHDGQEVVLEMAEQQYEELTTPHTSNQVEETNSKGTKRPRQAMNTLRTEECIDNEGRLYTRKVVQIERFWDPPPVTTKSSMIEKFFSNAEGVKVREKVEAPTAAVTEATRVYRCSQCMEQFSKLSQIRMHTCNRGTKHCTICDLAFVNVKALQVHMKIHEVDGSNQPRSFICGICGTEFSSHKSLRLHSRMHAPVRARHVEAPEGTQNATFTCFECGKTFSESYRAVHMALHTGDSVTCTICNRKFDSADSLAMHAAVHMDTNQPQSPTPIGDSVTMSTSMESTTTTTNTTTAAESAEIQNQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACPHCEKRFKASSVYNHHLLTHGDVRAYTCPYCPKTFKTRVQLAGHKNSHTKPFHCTECSRPFASLYAVRAHIETHKKDNNLKFSCYICGASYGRAFALKDHLKQHGTEIQQTPEPAREEEVQEGEEYVLAEEAEVEEEELVIPSPLPVQQDSGAESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01391420;
- 90% Identity
- iTF_01389676;
- 80% Identity
- -