Sumb018350.1
Basic Information
- Insect
- Synergus umbraculus
- Gene Symbol
- -
- Assembly
- GCA_900474325.1
- Location
- UCOK01019638.1:6156-12126[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.1 12 7.1 0.4 3 21 8 27 6 28 0.85 2 14 5.9 6.8e+02 1.6 0.0 2 20 34 52 33 53 0.85 3 14 4 4.6e+02 2.1 0.3 1 12 233 244 233 253 0.88 4 14 1 1.2e+02 4.0 2.2 1 20 363 382 363 384 0.94 5 14 8e-05 0.0092 16.9 0.5 3 23 390 410 388 410 0.97 6 14 4.5e-05 0.0051 17.7 1.5 1 23 421 443 421 443 0.97 7 14 0.0018 0.21 12.6 0.5 1 23 462 483 462 483 0.91 8 14 0.00036 0.041 14.9 0.1 2 23 489 510 488 510 0.95 9 14 4.7e-05 0.0054 17.7 4.8 1 23 556 578 556 578 0.99 10 14 2e-06 0.00023 22.0 3.7 1 23 584 606 584 606 0.96 11 14 0.00031 0.036 15.1 3.3 1 23 612 634 612 634 0.97 12 14 1.4e-06 0.00016 22.4 0.8 1 23 640 662 640 662 0.98 13 14 0.00021 0.024 15.6 0.4 1 23 666 688 666 688 0.98 14 14 0.00038 0.044 14.8 0.2 1 23 696 718 696 718 0.97
Sequence Information
- Coding Sequence
- ATGGGGTCGTTGAATTTAGTTTGTCCGATGTGTTGTGGAGAGACTTTTCAGAGTTCGCAGTCGCTGAAATATCATTTACTTAGTATGACGGACAATTTATATTGTCCAGGATGCTCCGAAAGATCGGATTCTGTTTTGGCATTGATTCAACATCTGGATTTTTGTGGACAATCGAGCGATTCCGAGGTGAAGGagacgaaatttaaattgaaggaGAAGACGAAAGAAGACAATCTAAAAACTGTGGAGATTTTGCTGAAGGATATTCCTTCCGAAGCCGAATCCGAGgagaattttgaaacttaTGAGGCCGAGGACAACGAAGTCAAATCAATTTGTGAGGAGCGATCTATTCAAGTTGAAGAACCAGtaaaagtAAAACAGCTGCCAAAAATCCGATCGGAGTCACAAGTGAACacgaaaatcgaaaaagtgTTTGTGAAGATAGACAATACAGTCGGGAAATCCCGAACACCCGATCCACTAATGGAAATTCCGAATTCAGCTGAGGAGGAGAAATTGATGGAAAAAAATGTGATAGCAATTTTGCCCGATGGATCAGAAATTCTGAACGATGAGGAAACCACTTTGATTAGCATGGATCATATTAATGTTGAGGAATTGGACGAGGCAAGGTTCATGAAAGTCAAGGAAGAGTTGTGTGAGGTAAAAAAGGAGAAGGAAGCAGATTCTCTCTACAGTTGCAGCAGCTGTTCGATGAGTTTTAATTCAGTCCTTGACCACATAAAGCAATACCACGATGGTCAGGAAGTCGTTTTGGAAATGGCAGAACAGCAGTACGAAGAATTGACAACTCCGCACACGTCGAACCAGGTCGAGGAAACAAATTCCAAAGGTACTAAGCGTCCTCGCCAAGCAATGAACACTCTCCGAACCGAAGAATGCATCGACAACGAAGGTCGACTTTACACCAGAAAAGTTGTTCAGATAGAGAGATTTTGGGATCCGCCACCAGTAACGACAAAATCTTCGATgattgagaaatttttctctAACGCCGAGGGCGTCAAGGTGAGAGAGAAAATCGAAGCACCGACTGCAGCAGCAAAAGAAGCAACTCGAGTTTACCGCTGCAGCCAATGCATGGAACAGTTTTCGAAATTATCGCAAATTCGAATGCACACTTGCAATCGAGGCACCAAGCATTGTACTATTTGTGATCTGGCTTTCGTGAATGTGAAGGCCTTACAAGTTCACATGAAAATTCACGAGGTCGATGACAGCAATCAGCCCCGATCTTTTATCTGCGGAATTTGTGGAACCGAGTTCTCGTCTCATAAAAGTTTGAGACTGCATTCCAGAATGCACGCACCCGTCCGAGCGAGACACGTGGAGGCACCGGAAGGAACTCAAAATGCGACTTTTACTTGCTTCGAATGTGGAAAGACATTCTCGGAATCTTATCGAGCTGTGCACATGGCCCTTCACACTGGCGATTCCGTCACTTGTACGATTTGCAACCGGAAATTTGATTCTGCCGACAGTTTGGCGATGCACGCTGCCGTTCATATGGATACTAATCAGCCGCAATCACCAACTCCGATCGGAGATTCAGTGACGATGTCTACTTCGATGGAATCGACAACCACGACGACTAATACGACAACAGCTGCTGAATCGGCTGAAATTCAGAATCAAAAACCGTATCAGTGCCAACATTGCGGTAGAAGATTTACCAGACCCCATGAAAAAGTGAAGCATGAAAGAATTCACACGGGGGAAAAACCTCACGCCTGcgaagtcTGTGGAAAAACTTTCAGGGTCTCCTACTGTCTCACCCTTCATATGAGAACTCACACTGGAGTTCGTCCCTACGCCTGCCCACATTGTGAAAAACGTTTTAAGGCTTCTTCGGTCTACAATCATCATCTTCTTACTCACGGGGACGTTCGGGCCTACACTTGTCCCTATTGTCCCAAGACTTTCAAAACCCGAGTTCAACTTGCGGGACATAAAAATAGCCACACGAAACCCTTCCACTGTACCGAATGTTCGCGACCTTTTGCTTCACTCTATGCGGTTCGCGCTCATATTGAGACGCACAAAAAAGACAACAATCTGAAATTCAGTTGCTATATTTGTGGAGCTTCTTATGGAAGAGCTTTTGCGCTTAAGGATCACTTGAAACAACACGGGACGGAAATACAACAGACTCCGGAACCTGCGAGGGAGGAGGAAGTGCAGGAAGGCGAGGAATATGTTCTCGCAGAGGAGGCGGAGGTCGAGGAAGAAGAACTCGTTATTCCCTCTCCTCTTCCAGTTCAACAGGATTCGGGAGCTGAATCtgattaa
- Protein Sequence
- MGSLNLVCPMCCGETFQSSQSLKYHLLSMTDNLYCPGCSERSDSVLALIQHLDFCGQSSDSEVKETKFKLKEKTKEDNLKTVEILLKDIPSEAESEENFETYEAEDNEVKSICEERSIQVEEPVKVKQLPKIRSESQVNTKIEKVFVKIDNTVGKSRTPDPLMEIPNSAEEEKLMEKNVIAILPDGSEILNDEETTLISMDHINVEELDEARFMKVKEELCEVKKEKEADSLYSCSSCSMSFNSVLDHIKQYHDGQEVVLEMAEQQYEELTTPHTSNQVEETNSKGTKRPRQAMNTLRTEECIDNEGRLYTRKVVQIERFWDPPPVTTKSSMIEKFFSNAEGVKVREKIEAPTAAAKEATRVYRCSQCMEQFSKLSQIRMHTCNRGTKHCTICDLAFVNVKALQVHMKIHEVDDSNQPRSFICGICGTEFSSHKSLRLHSRMHAPVRARHVEAPEGTQNATFTCFECGKTFSESYRAVHMALHTGDSVTCTICNRKFDSADSLAMHAAVHMDTNQPQSPTPIGDSVTMSTSMESTTTTTNTTTAAESAEIQNQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACPHCEKRFKASSVYNHHLLTHGDVRAYTCPYCPKTFKTRVQLAGHKNSHTKPFHCTECSRPFASLYAVRAHIETHKKDNNLKFSCYICGASYGRAFALKDHLKQHGTEIQQTPEPAREEEVQEGEEYVLAEEAEVEEEELVIPSPLPVQQDSGAESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01391420;
- 90% Identity
- iTF_01389676;
- 80% Identity
- -