Smag000036.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- -
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000001.1:241000-246084[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.29 38 5.8 0.4 3 21 8 27 6 28 0.85 2 14 6.1 8e+02 1.6 0.0 2 20 34 52 33 53 0.85 3 14 4.2 5.5e+02 2.1 0.3 1 12 228 239 228 248 0.88 4 14 1.1 1.4e+02 4.0 2.2 1 20 358 377 358 379 0.94 5 14 1.5e-05 0.0019 19.3 0.4 3 23 385 405 383 405 0.97 6 14 2.6e-05 0.0034 18.5 1.5 1 23 416 438 416 438 0.98 7 14 0.0019 0.25 12.7 0.5 1 23 457 478 457 478 0.91 8 14 0.0024 0.31 12.3 0.0 2 23 484 505 483 505 0.95 9 14 4.8e-05 0.0063 17.7 4.8 1 23 550 572 550 572 0.99 10 14 1.2e-06 0.00015 22.8 3.9 1 23 578 600 578 600 0.98 11 14 0.00024 0.032 15.5 4.1 1 23 606 628 606 628 0.97 12 14 1.5e-06 0.00019 22.5 0.8 1 23 634 656 634 656 0.98 13 14 0.00022 0.029 15.6 0.4 1 23 660 682 660 682 0.98 14 14 0.0004 0.052 14.8 0.2 1 23 690 712 690 712 0.97
Sequence Information
- Coding Sequence
- ATGGGGTCGTTGAATTTAGTTTGTCCGATGTGTTGTGGAGAGACTTTTCAGAGTTTGCAGTCGCTGAAATATCATTTGCTTAGCATGACGGACAATTTATATTGTCCAGGATGTTCCGAAAGATCGGATTCTGTTTTGGCTTTGATTCAACATCTGGATTTCTGCGGACAATCGAACGATTCCGAGGCGAAGGagacgaaatttaaattgaaggaGAAGACGAAAGGGGACAGTCTAAAAACCGTGGAGGTTTTGctgAAGGAAATTCCTTCCGACGCCGAATCCCAagagaattttgaaactttcgaGGCCGAGGACAACGAAGTGAAATCGATTTGTGAGGAGCGATCCATTCAAGTTGAAGAACCAGtaaaagtAAAGCAGCTGCCAAAAATCCGATCGGAGTCACAAGTGCAAACGAAGATCGAAAAAGTGTTCGTGAAAATAGACAATAAAGTCGGGAAACCCCGAACACCCGATCCACTAATGGAAATTTCTAATTCAGCTGAGGAGGACAAATTGATGGAAAAGAACGTGATAGCAATTTTGCCCGATGGATCAGAAATTCTGAACGATGAGGAGAGCACTTTGATTAGCATGGATCACATTAATGTTCAGGAATTGGACGAGGCGAGGTTCATGAGAGTTAAGCAAGAGTTGTGTGAGGAATCAGATTCTCTCTACAGTTGCAGTAGCTGTTCGATGAGTTTCAATTCAGTTCTCGATCACATAAAGCAATACCACGATGGCCAGGAAGTCGTTTTGGAAATGGCAGAACAGCAATACGAAGAATTGACAACTCCACACACGTCGAACCAGGTCGAGGAAACAAATTCCAAAGGTTCTAAGCGTCCTCGTCAAGCAATGAACACTCTCCGAACCGAAGAATGCATCGACAGCGAAGGTCGACTTTACACCAGAAAAGTTGTTCAGATTGAGAGATTTTGGGATCCGCCACCAGTCACGACAAAATCTTCAATGATTGAGAAATTCTTTTCGAACGCCGAGGGCGTCAAGGTGAGAGAGAAAAACGATGCGCCGACTGCAGCAGCAACAGCAACGACTCGAGTTTACCGTTGCAGCCAGTGCATGGagcaattttcgaaattatcgCAAATTCGAATGCACACTTGCAATCGAGGAACCAAGCATTGTACTATTTGCGATCTGGCTTTCGTGAATGCGAAGGCCTTGCAAGTTCACATGAAAGTACACGAGGGCGATGACGGCAATCAGCCCAAATCTTTTGTCTGTGGAATTTGCGGAACCGAATTCTCGTCTCATAAAAGTTTGAGACTGCATTCTAGAATGCACGCACCCGTTCGAGCAAGACACGTGGAGGCACCGGAAGGAACTCAAAATGCGACTTTTACTTGCTTCGAGTGTGGCAAGACTTTCTCGGAATCTTATCGAGCTGTGCACATGGCCCTTCACACTGGCGATTCCGTCACTTGTGCGGTTTGCAACCGGAAATTTGATTCTGCTGACAGTTTGGCGATGCACGCTGCCGTTCATATGGAAACTAATCAGTCGCAATCGCCAACTCCGGTCGGAGATTCAGTGACGTCCACTTCGACGGAATCGACAACGACGACGACGAATACGACGACAGTTGCCGAATCGGCCGAGATTCAGAGTCAGAAACCGTATCAGTGCCAACATTGCGGGAGAAGATTTACCAGACCGCATGAAAAAGTGAAGCATGAAAGGATTCACACGGGGGAAAAACCTCATGTCTGCgaagtctGTGGAAAAACTTTCAGAGTCTCCTACTGCCTCACCCTTCATATGAGAACTCACACCGGAGTTCGTCCCTACGCCTGCCAACATTGTGGAAAACGTTTCAAGGCCTCTTCGGTTTACAATCACCATCTTCTTACTCACGGGGACGTTCGGGCCTACACTTGTCCCTATTGTCCCAAGACTTTCAAAACCCGAGTTCAACTCGCGGGACATAAAAACAGCCACACGAAACCCTTCCACTGTACCGAATGTTCGCGACCTTTTGCCTCGCTTTATGCGGTTCGGGCTCATATTGAAACGCACAAAAAAGACAACAATCTCAAATTCAGTTGCTATATTTGTGGAGCTTCGTATGGGAGAGCCTTTGCGCTTAAGGATCACTTGAAACAACACGGAACGGAAATACAACAGACGCCGGAACCTGCGAGGGAGGAGGAAGTGCAGGAAGGGGAGGAATATGTTCTCGCAGAGGAGGCGGAGGTCGAGGAAGAAGAACTCGTTATTCCCTCTCCTCTTCCAGTTCAACAATCTTCGGGAGCTGAATctgaataa
- Protein Sequence
- MGSLNLVCPMCCGETFQSLQSLKYHLLSMTDNLYCPGCSERSDSVLALIQHLDFCGQSNDSEAKETKFKLKEKTKGDSLKTVEVLLKEIPSDAESQENFETFEAEDNEVKSICEERSIQVEEPVKVKQLPKIRSESQVQTKIEKVFVKIDNKVGKPRTPDPLMEISNSAEEDKLMEKNVIAILPDGSEILNDEESTLISMDHINVQELDEARFMRVKQELCEESDSLYSCSSCSMSFNSVLDHIKQYHDGQEVVLEMAEQQYEELTTPHTSNQVEETNSKGSKRPRQAMNTLRTEECIDSEGRLYTRKVVQIERFWDPPPVTTKSSMIEKFFSNAEGVKVREKNDAPTAAATATTRVYRCSQCMEQFSKLSQIRMHTCNRGTKHCTICDLAFVNAKALQVHMKVHEGDDGNQPKSFVCGICGTEFSSHKSLRLHSRMHAPVRARHVEAPEGTQNATFTCFECGKTFSESYRAVHMALHTGDSVTCAVCNRKFDSADSLAMHAAVHMETNQSQSPTPVGDSVTSTSTESTTTTTNTTTVAESAEIQSQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHVCEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGDVRAYTCPYCPKTFKTRVQLAGHKNSHTKPFHCTECSRPFASLYAVRAHIETHKKDNNLKFSCYICGASYGRAFALKDHLKQHGTEIQQTPEPAREEEVQEGEEYVLAEEAEVEEEELVIPSPLPVQQSSGAESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01391420;
- 90% Identity
- iTF_01389676;
- 80% Identity
- -