Sbel009927.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sturmia bella
Gene Symbol
-
Assembly
GCA_963662145.1
Location
OY759170.1:2427685-2441869[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 1.2e-07 8.1e-06 26.4 1.4 2 23 163 184 163 184 0.97
2 9 1.5e-07 1e-05 26.1 0.5 1 23 190 212 190 212 0.98
3 9 1.5e-07 9.7e-06 26.2 0.6 1 23 218 240 218 240 0.98
4 9 8.1e-06 0.00053 20.7 0.5 4 23 251 270 246 271 0.92
5 9 8.3e-05 0.0054 17.5 2.9 1 23 276 298 276 298 0.97
6 9 4.1e-05 0.0027 18.5 3.6 1 23 304 327 304 327 0.98
7 9 0.00013 0.0084 16.9 2.1 1 23 333 355 333 355 0.98
8 9 7.6e-06 0.0005 20.8 1.1 1 23 360 382 360 382 0.98
9 9 0.0034 0.23 12.4 0.3 2 23 389 413 388 413 0.94

Sequence Information

Coding Sequence
ATGGAAAGCATTTGCAGATTGTGTTTCCAACCAGCAGCGtTGTTCCAAGTGCCCGGTTATAACATACCCACCTGCGTAAAGTGTTCAGAACATTTGACGAACAGTGGCAATGGTTTCTATCAGGCAGTAGCTGCCACTGCTACTGGACAGCCGGCTCTGGCGGCAACGGCGGCTGCTAACAACGCCAACAACACCAACACcgctaataataataacaatactaCAACTACCACTACTACTAACAACAGCAATACAGCGAACAATTTgaatcaacaacaaatgcctcAACAACAGCTTCAAAACTCGACGAATTCGACTAATAGTCTTCAATCGCAAGACGATTCGGAGGAGCGGGTGCAACAGCAAACACCACGCCGTCCGCGTAAAAACGGCgttaataaaattcaacaaatcACGATGTCCTCCTATGAATTGGAGAAGACCATTCAACATTTAGATGTGGACTTAATCTTTAATGAAGAGGGCTCATGTCCTTTATGCAATAAAACCTTTTCAAGAAAATCCTCCTTGATAACACACATACGTAATCATGCAGCTGAACGAAAATTTGTATGCAACTATTGTAACAAAGGCTTTACTCAAGCGGCCAATTTAAGAAATCATGAGCGCATACACACCAATGATCGTCCTTATGTTTGTGGGGATTGTGGCAAAACTTTTACACAGataacaaatttaaataatcatAGACGTTTACATACCGGTGAACGTCCCTTTGTTTGCATTGAGCCTGAATGCGGTCGGTCATTTGCCCAAGTAACTAATTTGAATAATCATATGAAAACCCACCACAAAGTGCAGCAATACTGTTGCAATCAATGCCCGAAAAAGTTCACGCAAGTCACCTCGCTCAATCAACACCTACAGGCCCATGCTGGCATAACTGGTTATTATTGTCCCCGCTGTCCGGAGAAGACATTCAAACAGCAATCACAGCTACACACTCATATGAAATCGCATGGTCTCCAGTATCCATTTGAATGTACAAAATGTGATGAGAAATTCTTGCAACAGGCTCACTTGGAGCAACATTTAAAGATGCACGATGAATTCAAATACAAATGCAATATTTGCCCCAGTTCATTTAATCAGGAATCACTACTTAAGAAGCATGAACAACGTCATTTAGAGGGCAGGTACCTCACTTGCCCTGTGGCCAATTGTAATGAGGCCTTTGCTGTTCGCCAACATCTTTCGAAACATTTGTTAAACAGTCATTCACATACAGAACTACCGCCTCCAAAACGCTCCAAGAAATGTATAACATTGCAACCGCCTCAACAGCCCGTCACCATGGTTGGCCAGCCACTGTCTCTGCAACATGCTCCCCAACGTGGTCGACCCCCTAAGAATAAAAATAAGCCAGTTATAAATAATGTAAGTGGTCTTTCGATACCACAACAATTAAATCAACAcctgcaacagcaacagcagcagcaacaacagcaacaacaacagcagcaacaacaacagcaacaacagttactacagcagcaacagcaacaattgcTACTGGGCAATCAAGTTAAAGTCCGTTACATACCCAACAATCAGATTAAATAG
Protein Sequence
MESICRLCFQPAALFQVPGYNIPTCVKCSEHLTNSGNGFYQAVAATATGQPALAATAAANNANNTNTANNNNNTTTTTTTNNSNTANNLNQQQMPQQQLQNSTNSTNSLQSQDDSEERVQQQTPRRPRKNGVNKIQQITMSSYELEKTIQHLDVDLIFNEEGSCPLCNKTFSRKSSLITHIRNHAAERKFVCNYCNKGFTQAANLRNHERIHTNDRPYVCGDCGKTFTQITNLNNHRRLHTGERPFVCIEPECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLQYPFECTKCDEKFLQQAHLEQHLKMHDEFKYKCNICPSSFNQESLLKKHEQRHLEGRYLTCPVANCNEAFAVRQHLSKHLLNSHSHTELPPPKRSKKCITLQPPQQPVTMVGQPLSLQHAPQRGRPPKNKNKPVINNVSGLSIPQQLNQHLQQQQQQQQQQQQQQQQQQQQQLLQQQQQQLLLGNQVKVRYIPNNQIK