Basic Information

Insect: Pollenia labialis
Gene Symbol: -
Assembly: GCA_949318255.1
Location: OX439142.1:19348100-19376926[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.3e-07 1.9e-05 26.3 1.4 2 23 155 176 155 176 0.97

2 9 1.7e-07 2.3e-05 26.0 0.5 1 23 182 204 182 204 0.98

3 9 1.6e-07 2.2e-05 26.1 0.6 1 23 210 232 210 232 0.98

4 9 8.8e-06 0.0012 20.6 0.5 4 23 243 262 238 263 0.92

5 9 9e-05 0.012 17.4 2.9 1 23 268 290 268 290 0.97

6 9 4.4e-05 0.0061 18.4 3.6 1 23 296 319 296 319 0.98

7 9 0.00015 0.021 16.7 2.0 1 23 325 347 325 347 0.98

8 9 8.2e-06 0.0011 20.7 1.1 1 23 352 374 352 374 0.98

9 9 0.0037 0.52 12.4 0.3 2 23 381 405 380 405 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.3e-07	1.9e-05	26.3	1.4	2	23	155	176	155	176	0.97
2	9	1.7e-07	2.3e-05	26.0	0.5	1	23	182	204	182	204	0.98
3	9	1.6e-07	2.2e-05	26.1	0.6	1	23	210	232	210	232	0.98
4	9	8.8e-06	0.0012	20.6	0.5	4	23	243	262	238	263	0.92
5	9	9e-05	0.012	17.4	2.9	1	23	268	290	268	290	0.97
6	9	4.4e-05	0.0061	18.4	3.6	1	23	296	319	296	319	0.98
7	9	0.00015	0.021	16.7	2.0	1	23	325	347	325	347	0.98
8	9	8.2e-06	0.0011	20.7	1.1	1	23	352	374	352	374	0.98
9	9	0.0037	0.52	12.4	0.3	2	23	381	405	380	405	0.94

Sequence Information

Coding Sequence: ATGGAAAGCATTTGTAGATTGTGTTTTCAACCAGCAGCGTTGTTCCAAGTACCCGGCTATAATATACCCACCTGTGTAAAGTGTTCCGAACATTTGACAAACAGTGGTAATGGCTTCTATCAGGCTGTAGCTGCCACTGCCACTGCTACAGGTCAACCGGCACTGGCGGCAACAACTGCAGCtaacaacaccaacaataataatagtaacacaacaacaaataataGCAATACAGCGAATAATTTGAATCAACAACAAATGCctcaacaacaattacaaaactCCACCAATTCGACCAATAGTCTACAATCGCAGGACGATTCGGAAGAAAGAGTGCAACAAACACCACGCCGTCCGCGTAAAAACGGTGTTAATAAAATCCAACAAATCACGATGTCCTCCTATGAATTGGAGAAGACCATACAACATTTAGATGTTGACTTAATATTTAACGAAGAAGGCTCATGTCCTTtatgcaataaaacattttcaaggAAATCCTCCTTGATAACACACATACGTAACCATGCAGCTGAAAGAAAATTTGTGTGCAATTATTGTAATAAaggttttaccCAAGCGGCCAATCTAAGGAACCATGAGCGTATACACACTAATGATCGTCCTTATGTTTGTGGAGATTGTGGCAAAACATTTACACAGATTACAAATCTTAATAATCACAGACGTTTACATACCGGTGAACGTCCGTTTGTGTGCATTGAACCAGAATGTGGACGTTCTTTCGCCCAAGTAACCAATCTGAATAATCATATGAAAACCCACCATAAAGTCCAACAGTACTGTTGTAATCAATGTCCGAAAAAATTCACTCAAGTCACCTCGCTCAATCAACATTTACAAGCTCATGCCGGCATAACCGGCTACTACTGTCCCCGATGTCCGgagaaaacatttaaacaacaaTCCCAACTACATACACATATGAAATCACATGGTCTTCAGTATCCATTTGAATGTTCAAAATGTGATGAGAAATTCTTGCAGCAGGCCCATTTGGAGCAGCATCTGAAAATGCATGATGAGTTCAAATACAAATGCAATATTTGTCCTAGTTCATTCAATCAGGAATCACTACTTAAGAAACATGAACAACGTCATTTAGAGGGCAGgTACCTCACTTGTCCTGTGGCCAATTGCAATGAGGCCTTTGCTGTTCGCCAACATCTTTCGAAACATTTGTTAAATAGTCATTCGCATACCGAACTACCGCCTCCAAAACGCTCTAAGAAATGTATAACATTACAACCGCCTCAACAGCCTGTCACCATGGTTGGCCAGCCATTGTCTTTACAACATGCTCCCCAACGTGGCCGTCCCCCtaagaataaaaataaggtaaattctttaaatattccATCATTGATAAAAATCGAAATTAATGATGTTCTGAATTATAATCAGCCAGTTATAAATAATGTAAGTGGTCTTTCAATACCACAACAATTAAATCAACACCtgcagcaacaacagcagcagcaacaacaacagcagcaacaacaacagcaacagcaacaacagcagcagcaacaacaacagttactacagcaacaacaacagcaattatTATTGGGCAATCAAGTTAAAGTCCGTTACATACCCAACAATCAAATCAAATAG
Protein Sequence: MESICRLCFQPAALFQVPGYNIPTCVKCSEHLTNSGNGFYQAVAATATATGQPALAATTAANNTNNNNSNTTTNNSNTANNLNQQQMPQQQLQNSTNSTNSLQSQDDSEERVQQTPRRPRKNGVNKIQQITMSSYELEKTIQHLDVDLIFNEEGSCPLCNKTFSRKSSLITHIRNHAAERKFVCNYCNKGFTQAANLRNHERIHTNDRPYVCGDCGKTFTQITNLNNHRRLHTGERPFVCIEPECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLQYPFECSKCDEKFLQQAHLEQHLKMHDEFKYKCNICPSSFNQESLLKKHEQRHLEGRYLTCPVANCNEAFAVRQHLSKHLLNSHSHTELPPPKRSKKCITLQPPQQPVTMVGQPLSLQHAPQRGRPPKNKNKVNSLNIPSLIKIEINDVLNYNQPVINNVSGLSIPQQLNQHLQQQQQQQQQQQQQQQQQQQQQQQQQQLLQQQQQQLLLGNQVKVRYIPNNQIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00716956;
90% Identity: iTF_01376809;
80% Identity: -