Basic Information

Insect: Nowickia ferox
Gene Symbol: -
Assembly: GCA_936446695.1
Location: CAKZFO010000258.1:3019177-3032256[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.3e-07 1.3e-05 26.4 1.4 2 23 158 179 158 179 0.97

2 9 1.6e-07 1.6e-05 26.1 0.5 1 23 185 207 185 207 0.98

3 9 1.5e-07 1.5e-05 26.2 0.6 1 23 213 235 213 235 0.98

4 9 8.4e-06 0.00082 20.7 0.5 4 23 246 265 241 266 0.92

5 9 8.5e-05 0.0084 17.5 2.9 1 23 271 293 271 293 0.97

6 9 4.2e-05 0.0041 18.5 3.6 1 23 299 322 299 322 0.98

7 9 0.00013 0.013 16.9 2.1 1 23 328 350 328 350 0.98

8 9 7.8e-06 0.00077 20.8 1.1 1 23 355 377 355 377 0.98

9 9 0.0035 0.35 12.4 0.3 2 23 384 408 383 408 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.3e-07	1.3e-05	26.4	1.4	2	23	158	179	158	179	0.97
2	9	1.6e-07	1.6e-05	26.1	0.5	1	23	185	207	185	207	0.98
3	9	1.5e-07	1.5e-05	26.2	0.6	1	23	213	235	213	235	0.98
4	9	8.4e-06	0.00082	20.7	0.5	4	23	246	265	241	266	0.92
5	9	8.5e-05	0.0084	17.5	2.9	1	23	271	293	271	293	0.97
6	9	4.2e-05	0.0041	18.5	3.6	1	23	299	322	299	322	0.98
7	9	0.00013	0.013	16.9	2.1	1	23	328	350	328	350	0.98
8	9	7.8e-06	0.00077	20.8	1.1	1	23	355	377	355	377	0.98
9	9	0.0035	0.35	12.4	0.3	2	23	384	408	383	408	0.94

Sequence Information

Coding Sequence: ATGGAAAGCATTTGCAGATTGTGCTTTCAACCAGCAGCGttgttcCAAGTACCCGGCTATAATATACCCACCTGTGTGAAGTGCTCAGAACATTTGACAAACAGTGGCAATGGTTTCTATCAAGCAGTAGCTGCCACTGCTACTGGTCCGCCGGCACTGGCGGCAGCAGCGGCTGCAAataataccaacaacaacaccaCCACCAGCACCACTAATAATAATACAACCAACACTAGCAATACAGCGAATAATTTGAATCAACAACAAATGCCTCAGCAACAGTTGCAAAATTCCACCAATTCAACCAATAGTCTTCAATCGCAGGACGATTCGGAAGAACGAGTGCAACAAACACCACGCCGTCCGCGTAAAAATGGTGttaataaaattcaacaaatcACGATGTCCTCCTATGAATTGGAGAAGACCATACAACATTTAGATgtggacttaatatttaatgaagaaGGCTCATGTCCTTTAtgcaataaaacattttcaaggAAATCATCATTGATTACACACATACGCAATCATGCAGCTGAAAGGAAATTTGTATGCAATTATTGCAATAAAGGTTTTACTCAAGCGGCCAATTTACGAAATCACGAGCGTATACATACCAACGATCGTCCTTATGTATGCGGAGATTGTGGCAAGACATTTACACAGatTACAAATCTGAATAATCACAGGCGTTTACATACTGGCGAACGTCCCTTCGTGTGCATTGAGCCTGAATGTGGCCGCTCATTTGCCCAAGTTACCAACTTGAATAATCATATGAAAACCCACCACAAAGTGCAGCAATATTGCTGCAACCAATGCCCGAAAAAGTTCACACAAGTCACCTCGCTGAATCAACACTTGCAAGCTCATGCTGGCATCACAGGCTACTACTGCCCCCGGTGTCCAGAGAAGACATTTAAACAACAATCGCAACTACATACTCACATGAAATCGCATGGTCTCCAATATCCATTTGAATGTACAAAATGTGATGAGAAATTCTTGCAGCAAGCCCACTTGGAGCAGCATCTGAAGATGCACGATGAGTTCAAATACAAATGCAATATTTGTCCTAGTTCATTCAACCAGGAATCACTACTTAAGAAACATGAACAACGTCATTTAGAGGGCAGGTACCTCACTTGTCCTGTGGCCAATTGCAATGAGGCCTTTGCTGTACGCCAGCATCTTTCGAAACATTTGTTAAATAGTCATTCTCATACCGAACTACCGCCTCCAAAACGATCCAAGAAATGTATAACATTGCAACCGCCTCAACAGCCCGTCACCATGGTCGGCCAGCCATTGTCCTTGCAACATGCTCCCCAACGTGGTCGCCCCCCTAAGAATAAAAACAAgCCAGTTATAAATAATGTAAGTGGTCTTTCGATACCACAACAATTAAATCAACACctgcagcaacagcagcaacagcagcaacaacagcagcagcaacaacaacagcagcaacaacaacagcaacaacagctactacagcagcaacaacagcaattaTTATTGGGCAATCAAGTTAAAGTCCGCTACATACCCAATAATCAAATCAAATAG
Protein Sequence: MESICRLCFQPAALFQVPGYNIPTCVKCSEHLTNSGNGFYQAVAATATGPPALAAAAAANNTNNNTTTSTTNNNTTNTSNTANNLNQQQMPQQQLQNSTNSTNSLQSQDDSEERVQQTPRRPRKNGVNKIQQITMSSYELEKTIQHLDVDLIFNEEGSCPLCNKTFSRKSSLITHIRNHAAERKFVCNYCNKGFTQAANLRNHERIHTNDRPYVCGDCGKTFTQITNLNNHRRLHTGERPFVCIEPECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLQYPFECTKCDEKFLQQAHLEQHLKMHDEFKYKCNICPSSFNQESLLKKHEQRHLEGRYLTCPVANCNEAFAVRQHLSKHLLNSHSHTELPPPKRSKKCITLQPPQQPVTMVGQPLSLQHAPQRGRPPKNKNKPVINNVSGLSIPQQLNQHLQQQQQQQQQQQQQQQQQQQQQQQQLLQQQQQQLLLGNQVKVRYIPNNQIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00716956;
90% Identity: iTF_01376809;
80% Identity: -