Slub029763.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992300.1:10633076-10636973[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.034 3.3 9.3 7.3 1 23 149 172 149 172 0.95 2 18 0.00041 0.041 15.3 1.5 1 23 181 204 181 204 0.96 3 18 0.014 1.4 10.5 0.4 2 23 217 239 217 239 0.97 4 18 0.0007 0.068 14.6 1.1 1 23 248 271 248 271 0.97 5 18 0.0063 0.62 11.6 3.1 1 23 283 306 283 306 0.97 6 18 0.00014 0.014 16.8 0.7 2 23 338 360 337 360 0.97 7 18 0.0014 0.14 13.6 1.2 2 23 370 392 369 392 0.96 8 18 0.089 8.7 8.0 1.1 2 19 398 415 397 418 0.91 9 18 0.00076 0.075 14.5 0.5 2 21 423 442 422 445 0.94 10 18 0.066 6.5 8.4 1.8 3 23 455 476 454 476 0.96 11 18 0.00089 0.087 14.3 4.6 1 23 481 504 481 504 0.94 12 18 0.0012 0.12 13.8 4.3 2 23 516 538 515 538 0.95 13 18 0.012 1.2 10.7 1.9 1 23 563 586 563 586 0.94 14 18 0.32 31 6.3 0.3 2 23 593 614 592 614 0.93 15 18 0.019 1.9 10.1 2.5 2 23 620 641 619 641 0.98 16 18 5 4.9e+02 2.5 1.2 3 23 649 671 647 671 0.88 17 18 0.031 3.1 9.4 0.1 1 23 707 729 707 729 0.96 18 18 0.32 32 6.2 2.8 1 23 735 758 735 758 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAAAATGAAGTTAAAGTAAAAGTCAAACTTGAAAGAAAAGATCCTACCTCATTTTTGCCTGAAGAGGCAATGTCTTATGaaattaagaagaaaaaaaagaaaaagaaaaaaaatatcgaggATCCATTCAAGGATATTGAAGATGATAAATCCGATAAGAAACCTGCAATAGCAGAAATAATACCACCGGCTTTTGATCCAGAAGTTAATATTAAAGTTGAAAAAATTGAAGTTGAATTAGATTTCCATgatTTTACAGATAATGGAGGCCTCATGTTAGAGGGGCCAGATAGTGATGACAGCCAGGAACCAGCTGTAAAAATTGAGAATCAAAACCATGAAGCCGTCTTACTTACATTCGAGAGTGTCATCAATCCGAAAAAAATAATACCCCCAAGGGAAGTAGATTATCCTATCGATATTGTACCCAAGCCAGAACACTTTTGCAAGATATGTCATCTGGTCTTCCaaacaacaaaaacactaaGAATGCACCAGaaaagaaaacacaaaatatttagaaaatcaTTCAAACATATATGCGATTACTGCAGTATGTCCTATGAAACTAAAAACAGTTTAGTTGCACACATTAAACGTAAACATGGACCTGATTCATCGCCAGATGACAAAGAAGAAAGAACCTGTGAGATATGTGCATTAGTGTTTAAAGGTATGGCCAGGTTACGGATGCACATGAGAAGGAAACATGGATCGTTCCAGGACTCCTTCAAGCATGAATGCGACGATTGCGGTCTGACTTATGATAAATATAGAAGTTTGTTAGTTCATATACAACGTAAACATTCAAACCAAACTAAGCCGGAGATCAGTCAGTGGTACAAATGCATGTTTTGTCAGATGATGTTCACTAAAAGAGAAACTTACGCAAGACATGTACAAAGGAAACATAGAATTGCCGACGATAATATAAAGCAAGAGAATAATGGAGGAAACTTGGAGGGCGACCTCGAAAGTTGTAAAAATGAGCAAACTGGTGAAATCACTTGCAAGGAATGCCCTTTAGTCTTTTCTTCAATTAATTTCCTAAAGCTGCATATGCGAAGAAAACATAACGCTTTGAAAGAAGACTTCAGATTGAAATGTAGGATCTGTAATTTATCTTATGATAAAATCGAAAGCCTTAAACGCCATGTGAGAAGGAAACATGATAAGGGCTCGTTGCATTGCGAAGTGTGCAATAAACAATTTGATTCCAgagaaatgtatttaaatcactCCCACATGAAAGTTATTAAAGAATGCACAATTTGTGGACTCATATTCGCTTCTCAAGGGGGTTTAGCGAAACATTTAAGGTGTACACACAAAATAGACACACCAAAAACAGTCTTTTGTAACTTGTGCAATGAAGGGTTTCATGATAAACGGCAGTTGAAACCACATCTCATGAAAGTGCATTTAAAAGTTTCTTACACGTGTATGCACtgcaaaaaagtttttaaagcaAAAGAGAGTTATCGGCGGCACATTCTGTTCAAACATCCTTCTCCAAACCATGTTGACAATCAACTGCAGAAATGTGAACACTGTACAGAGATGTTTAAGGATGAATTTGAACTTTGCAAACATATTAACTTAACACACAGACATGCACAGACAGACAGTTTACCAGACGGAgtacatataaaaaaggaaGATGAACATGACAAGAATAATTTCCAGTGCACCAAGTGCCCTGAGAAATATTTAACTTGGGACGAATTGAAAGTGCATTATGAACAATGTCACTATAATATGGAACAAACTCAATGTCAAATTTGTGGAGAAGTAATGCAAGGGCATGAATTGCAAAAGCATATAAAagcaatacatacaaataatgagaagcaatgtaaatattgtaattttaaaactaatattaaaataagtttaacgCAGCACATGTTGAGACACAAGAATGCAGCAACGATACATTGTGAGTACCCAGGTTGTCGGTATAAGACGTTTTATGAGGGTGCTATGGAGAAGCATAAGCGGAAGCACCTTGATCAAGGAGTCAAACTCCAATGTACGCAATGTCCTTTCCAaactatgaataaatatattttgaaatatcacgagGAAGCACATGAGACCGGTAAAAAGAGGTACGCGTGTGACCAGTGTGATTATGCTACAATTCTGCCGGCAAATTTAGTGCAACATAAGTATAAACATTCTACAGAGAAACGGTTCAAATGTGACGTGTGCTCTTTTGCAACTAAGTACAATACGTCACTAAGGTTTCATGTTAGAAAAAAGCACTGTGATCTCCCAACATTCagctaa
- Protein Sequence
- MEENEVKVKVKLERKDPTSFLPEEAMSYEIKKKKKKKKKNIEDPFKDIEDDKSDKKPAIAEIIPPAFDPEVNIKVEKIEVELDFHDFTDNGGLMLEGPDSDDSQEPAVKIENQNHEAVLLTFESVINPKKIIPPREVDYPIDIVPKPEHFCKICHLVFQTTKTLRMHQKRKHKIFRKSFKHICDYCSMSYETKNSLVAHIKRKHGPDSSPDDKEERTCEICALVFKGMARLRMHMRRKHGSFQDSFKHECDDCGLTYDKYRSLLVHIQRKHSNQTKPEISQWYKCMFCQMMFTKRETYARHVQRKHRIADDNIKQENNGGNLEGDLESCKNEQTGEITCKECPLVFSSINFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKGSLHCEVCNKQFDSREMYLNHSHMKVIKECTICGLIFASQGGLAKHLRCTHKIDTPKTVFCNLCNEGFHDKRQLKPHLMKVHLKVSYTCMHCKKVFKAKESYRRHILFKHPSPNHVDNQLQKCEHCTEMFKDEFELCKHINLTHRHAQTDSLPDGVHIKKEDEHDKNNFQCTKCPEKYLTWDELKVHYEQCHYNMEQTQCQICGEVMQGHELQKHIKAIHTNNEKQCKYCNFKTNIKISLTQHMLRHKNAATIHCEYPGCRYKTFYEGAMEKHKRKHLDQGVKLQCTQCPFQTMNKYILKYHEEAHETGKKRYACDQCDYATILPANLVQHKYKHSTEKRFKCDVCSFATKYNTSLRFHVRKKHCDLPTFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00405296;
- 90% Identity
- iTF_00157473; iTF_00441840; iTF_00824129; iTF_01198080;
- 80% Identity
- -