Dmen001147.1
Basic Information
- Insect
- Diaphora mendica
- Gene Symbol
- -
- Assembly
- GCA_949125395.1
- Location
- OX421310.1:13482949-13486963[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.034 4.6 9.3 7.3 1 23 150 173 150 173 0.95 2 18 0.00042 0.057 15.3 1.5 1 23 182 205 182 205 0.96 3 18 0.014 2 10.5 0.4 2 23 218 240 218 240 0.97 4 18 0.00069 0.093 14.6 1.1 1 23 249 272 249 272 0.97 5 18 0.0064 0.86 11.6 3.1 1 23 284 307 284 307 0.97 6 18 0.00015 0.02 16.8 0.7 2 23 339 361 338 361 0.97 7 18 0.0014 0.19 13.6 1.2 2 23 371 393 370 393 0.96 8 18 0.09 12 8.0 1.1 2 19 399 416 398 419 0.91 9 18 0.00078 0.1 14.5 0.5 2 21 424 443 423 446 0.94 10 18 0.067 9.1 8.4 1.8 3 23 456 477 455 477 0.96 11 18 0.0009 0.12 14.3 4.6 1 23 482 505 482 505 0.94 12 18 0.0012 0.16 13.9 2.9 3 23 518 539 516 539 0.95 13 18 0.025 3.3 9.8 2.1 1 23 563 586 563 586 0.94 14 18 1.4 1.9e+02 4.2 0.1 2 23 593 614 592 614 0.88 15 18 0.019 2.6 10.1 2.5 2 23 620 641 619 641 0.98 16 18 5.1 6.9e+02 2.5 1.2 3 23 649 671 647 671 0.88 17 18 0.016 2.2 10.3 0.2 1 23 707 729 707 729 0.97 18 18 0.33 44 6.2 2.8 1 23 735 758 735 758 0.97
Sequence Information
- Coding Sequence
- ATGgaagaaaatgaagttaaagtaAAAGTCAAAGTTGAAAGAAAAGATCCTACCTCATTTTTGCCTGAAGAGGCAATGTcttatgaaattaaaaagaaaaaaaagaaaaagaaaaaaagagatATAGAGGATCCATTCAAGGATATTGAAGATGATAAAACGGATAAGAAACCTGCAATAACAGAAATAATACCGCCAGCTTTTGACCCAGAagttaatattaaagttgaAAAAATTGAAGTTGAATTAGATTTCCATGATTTTACCGATAATGGAGGCCTCATGTTAGAGGGGCCAGATAGTGAGGACAGCCAGGAACCTgctgtaaaaattgagaatcaaAACCATGAAGCCGTCCTACTTACATTCGAGAGTGTTATCAATCCGAAAAGAATATTACCCCCAAAGGAAGTAACTTATCCTATCGATATTGTACCCAAACCAGAACACTTTTGCAAGATATGTCATCTGGTCTTCCAAACAACCAAAACACTAAGAATGCACCAGAAAagaaaacacaaaatatttagaaaatcaTTTAAACATATTTGCGATTACTGCAGTATGTCCTATGAAACAAAAAACAGTTTAGTTGCACACATTAAACGTAAACATGGACCAGATTCATCGCCAGATGACAAAGAAGAGAGGACCTGTGAGATATGTGCATTAGTGTTTAAAGGTATGGCCAGGTTACGGATGCACATGAGAAGGAAACATGGATCGTTCCAGGACTCCTTCAAGCATGAATGCGAGGACTGCGGTCTGACTTATGATAAATATAGAAGTTTGTTAGTTCATATACAACGTAAACATTCAAACCAAACTAAACCGGAGATCAGTCAGTGGTACAAATGCATGTTTTGTCAGATGATGTTCACTAAAAGAGAAACTTACGCAAGACATGTACAAAGAAAACATAGAATTGCCGACGATAATATAAAACAAGAGAATATTGGTGAAAACTTAGAGGGCGATCTCGAAAGTTGTAAAAATGAGCAAACAGGTGAAATAACTTGCAAGGAATGTCCTTTAGTCTTTTCTTCAATTAACTTCCTAAAGCTACATATGCGAAGAAAACATAACGCTTTGAAAGAGGACTTCAGATTGAAATGTAGGATCTGTAATTTATCTTATGATAAGATCGAAAGTCTTAAACGCCATGTGAGAAGGAAACATGATAAGGGCTCGCTGCATTGCGAAGTGTGCAATAAACAATTTGATTCCagagaaatgtatttaaatcactCCCACATGAAAGTTATTAAAGAATGCACAATTTGTGGACTCATATTTGCTTCTCAAGGGGGTTTAGCGAAACATTTAAGGTGTACACACAAAATAGACACACCAAAAACAGTCTTTTGTAACTTGTGCAATGAAGGGTTTCATGATAAACGGCAGTTGAAACCACATCTCATGAAAGTGCATTTAAAAGTTTCTTACACATGTATGCACtgcaaaaaagtttttaaagcaAAGGAGAGTTATCGGCGGCACATTCTGTTCAAACATCCTTCTCCAAACCATCTTAACAATCAACTGCAGAATTGTGAGCACTGTACAGAGATGTTTAAGGATGAATTTGAACTTTGCAAACATATTAACTTAGCACATAGACATACAGAGGAGAGTTTACCAGGCGGCGTACTTATAAAAAAGGAAGATGAAGATATCAAGAATAATTTCCAGTGCACCAAGTGCCCTGAGAAATATTTAACTTGGGATGAATTAAAACTTCACTATGAACAATGTCACTATAATATGGAACAAACTCAATGTCAAATTTGTGGAGAAATAATGCAAGGGAATGAACTACAAAAGCATATAAAAGCAATTCATACAAATAATGAGAAgcaatgtaaatattgtaattttaaaactaatattaaaataagtttaacGCAGCACATGTTGAGACACAAGAATGCAGCAACGATACATTGTGAGTACCCAGGTTGTCGGTATAAGACCTTTTATGAAGGTGCTATGGAGAAGCATAAGCGGAAACACCTTGATCAAGGAGTCAAACTCCAATGTACGCAATGTCCTTTCCAaactatgaataaatatattttgaaatatcaTGAGGAAGCACATGCGACGGGTAAGAAGAGGTATTCATGTGACCAGTGTGATTATGCTACAATTCTGCCGGCAAATTTAGTCCAACATAAGTATAAACATTCTACAGAGAAACGGTTCAAATGTGACGTGTGCTCTTTTGCAACTAAGTACAATACGTCACTAAGGTTTCATGTTAGAAAAAAGCACTGTGATCTCCCAACATTCAgctaa
- Protein Sequence
- MEENEVKVKVKVERKDPTSFLPEEAMSYEIKKKKKKKKKRDIEDPFKDIEDDKTDKKPAITEIIPPAFDPEVNIKVEKIEVELDFHDFTDNGGLMLEGPDSEDSQEPAVKIENQNHEAVLLTFESVINPKRILPPKEVTYPIDIVPKPEHFCKICHLVFQTTKTLRMHQKRKHKIFRKSFKHICDYCSMSYETKNSLVAHIKRKHGPDSSPDDKEERTCEICALVFKGMARLRMHMRRKHGSFQDSFKHECEDCGLTYDKYRSLLVHIQRKHSNQTKPEISQWYKCMFCQMMFTKRETYARHVQRKHRIADDNIKQENIGENLEGDLESCKNEQTGEITCKECPLVFSSINFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKGSLHCEVCNKQFDSREMYLNHSHMKVIKECTICGLIFASQGGLAKHLRCTHKIDTPKTVFCNLCNEGFHDKRQLKPHLMKVHLKVSYTCMHCKKVFKAKESYRRHILFKHPSPNHLNNQLQNCEHCTEMFKDEFELCKHINLAHRHTEESLPGGVLIKKEDEDIKNNFQCTKCPEKYLTWDELKLHYEQCHYNMEQTQCQICGEIMQGNELQKHIKAIHTNNEKQCKYCNFKTNIKISLTQHMLRHKNAATIHCEYPGCRYKTFYEGAMEKHKRKHLDQGVKLQCTQCPFQTMNKYILKYHEEAHATGKKRYSCDQCDYATILPANLVQHKYKHSTEKRFKCDVCSFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00405296;
- 90% Identity
- iTF_01360976;
- 80% Identity
- -