Basic Information

Insect: Sogatella furcifera
Gene Symbol: -
Assembly: GCA_014356515.1
Location: chrX:1379594-1393165[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5e-05 0.02 15.2 0.1 22 47 352 377 344 383 0.84

2 9 0.1 1.4e+02 2.9 0.5 23 52 381 410 376 413 0.88

3 9 0.0014 2 8.8 0.1 21 44 463 486 459 494 0.91

4 9 2.7 3.7e+03 -1.7 0.0 23 52 493 522 489 523 0.77

5 9 0.044 61 4.1 0.0 23 44 521 542 516 548 0.88

6 9 0.17 2.4e+02 2.1 0.0 26 48 568 590 557 594 0.82

7 9 1.1 1.5e+03 -0.4 0.0 24 47 648 671 643 677 0.78

8 9 0.0023 3.3 8.1 0.1 23 52 675 704 671 706 0.87

9 9 0.33 4.7e+02 1.2 0.1 23 43 703 723 699 728 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5e-05	0.02	15.2	0.1	22	47	352	377	344	383	0.84
2	9	0.1	1.4e+02	2.9	0.5	23	52	381	410	376	413	0.88
3	9	0.0014	2	8.8	0.1	21	44	463	486	459	494	0.91
4	9	2.7	3.7e+03	-1.7	0.0	23	52	493	522	489	523	0.77
5	9	0.044	61	4.1	0.0	23	44	521	542	516	548	0.88
6	9	0.17	2.4e+02	2.1	0.0	26	48	568	590	557	594	0.82
7	9	1.1	1.5e+03	-0.4	0.0	24	47	648	671	643	677	0.78
8	9	0.0023	3.3	8.1	0.1	23	52	675	704	671	706	0.87
9	9	0.33	4.7e+02	1.2	0.1	23	43	703	723	699	728	0.86

Sequence Information

Coding Sequence: ATGGATGAGAAAAAGCGTGAGTCTGCAGGAGCAAAAAGTGAATCTTCTAATGCTGAACAAGCCAAACACCACGAAAAATCTCACGAATTTCACAGAAGGAATGGAAATGAAGGAAATCACGAAGCTCAACTCCAATTGACATCAGATCGGGCGCTTGGAAGTGTCTCGTTTGAAACATTGAGCCACATGATGGTGCAGCAGGGATGTTCGCAGCTTGGTATCCAACCTCCTCCCGGCTACCATCACCAAGGAGAGTATCCAGAACCGGTTTGTGAAATCGGAGCATTCAACAATGGTGCCAGTGCCCCACAAGCAGCAACGGCAAATCCAACTGACAAACAAACCATGCATCAAAATATTATTGTTTATGAAAATGAAGAACCAAGCATGCATGAGGTGCCTTGCAATCTTTGTAATGTTACATTCAGTAATACTTTTGCTTTGTTGAATCATACACGTATATCACATAGAGTACTAAAATGTGATGATACCTACCAGAATATGATAAGTGTGAGAGCTTCAAGTATTTGTCGCGAATTTAATGAGGCAAAAACAGGTGCAATCACTTCAGCAAATACTAGGGATGTGCCATCAACCGTTGATGAAAGTGCAGTTAAGGCCTTGACAAGTCCGCAAATGATTAACCATGGAGTACTGCATCAGATCAATCACCATCAGAATCAAAACACTTTACATCAGCAGCAACAACAACAACAACAACAGCAAAGTTCTCTTCAAGCACCGCAGACTGCAGTACGTAACACTGTTCATCAAAACCAGTCGCAGACATCACAAGCTGTTGAAATTGCTACCACAGTAGCTTCAATTGTATCATCTCTGGCTCAAGCCACCGGAACAGCCATAACAACTACTAATCAGCCTGCAAGTTCAACAAACAAATTTGGAGTTAGAATGTGCGATAAAAGCCAGAATACTGTTTCTGCTGCTGCTGCTGCTGCTAGTGTAATAGCTTGCACCCACGTATGTACTGTTTGCAATAAAGCTTTCAACAAACCCTCTGACTTGGTCCGTCATAGTATTGTGCACACCGAAGATCGTCCTTTCACTTGCGATGTTTGTAATTCAAGCTTTCGAAACTCTAGCAATCTGAGAATGCATCTGCTCACCCATTCTGACACAAAGCCTCATCCATGCACTGTTTGTGAAAAATCTTTCCGCCGACTTTCTGACTTGGAGCGTCATACTTGTTTGCATACAGGAGCACGGCCATTTGGTTGTACAATTTGCGGAATGGCATTCACAACCAACTACAACCTAAAGATACACTCAATGAAGCATACTGGATCCTTACCATACCCTTGTACTCAATGTGAGAAGTCGTTCAGCAAGCCTTCAGAACTGCAACGGCATCTAGTGATACACACTGGAGAAAGGCCATTCTCTTGTCCTCAGTGTGGAATGGCGTTTTCAAATTCGAGTAATTTGAGAAATCACATGATCACACACACTGGTCGTAGGCCATACCCATGCTCTATGTGTGACAAGGCATTCACGCGGCCGAGCGATGTCAAGCGTCATGTTCTCATTCACACTGGAGCTCGTCCTTTTGCATGCCAAATTTGTGGATTAGCTTTTGCTGACTCGTCCAATCTTAAGAAGCACACATTAACACATACAAAAAACAATAAAGGCTACAACCAAGGTGTGGCATCATCCAATAACGTGCCAGCCGTAGGCGTGCAGTGTAATATATGTAGTGTAGTGCTGCAAAATCTCAATGAATTGAACAATCATCTAATAGCAGCGCATAGTAATGCTGGATCCGGAAAAGACAATACAGATGGCAGCGCTTATCAGCCGTCTCAGGTAGTTGTCAAAACCCTGATGAAACCATTGCAGTACGAATGTGCCGTCTGTGGAGTTAGGTTTGTGCATGCAATTCACCTGCAGGAACACTCTTTGACTCATGATCGTGAACACTCATTCCAATGTGAAATATGCGACAAAAGTTTTGCACAAGAGACATTTCTACAGCAACATCTTTTGACACACACTGAAGCGCGACCTTTTGAATGTCCAGAATGCTATAAATGCTTCAAGAGCTCATCTCACCTAAAAAATCACGTCGCCATACACTCCGGTGTTAAACCGTTTACGTGTGAAACTTGCAGCAAGTCGTTTCTGAAACAGGCATCATTGAGACGTCATCAGGCAACACATGTACGCGGCAACCGAGTACCTTGTGCTGTGTGCGGCAAAACCTTTCTCAACATGGAGTATCTCCGCAAGCATACTGTTACTCATACAAATGTCGTCGTAACTCAATGA
Protein Sequence: MDEKKRESAGAKSESSNAEQAKHHEKSHEFHRRNGNEGNHEAQLQLTSDRALGSVSFETLSHMMVQQGCSQLGIQPPPGYHHQGEYPEPVCEIGAFNNGASAPQAATANPTDKQTMHQNIIVYENEEPSMHEVPCNLCNVTFSNTFALLNHTRISHRVLKCDDTYQNMISVRASSICREFNEAKTGAITSANTRDVPSTVDESAVKALTSPQMINHGVLHQINHHQNQNTLHQQQQQQQQQQSSLQAPQTAVRNTVHQNQSQTSQAVEIATTVASIVSSLAQATGTAITTTNQPASSTNKFGVRMCDKSQNTVSAAAAAASVIACTHVCTVCNKAFNKPSDLVRHSIVHTEDRPFTCDVCNSSFRNSSNLRMHLLTHSDTKPHPCTVCEKSFRRLSDLERHTCLHTGARPFGCTICGMAFTTNYNLKIHSMKHTGSLPYPCTQCEKSFSKPSELQRHLVIHTGERPFSCPQCGMAFSNSSNLRNHMITHTGRRPYPCSMCDKAFTRPSDVKRHVLIHTGARPFACQICGLAFADSSNLKKHTLTHTKNNKGYNQGVASSNNVPAVGVQCNICSVVLQNLNELNNHLIAAHSNAGSGKDNTDGSAYQPSQVVVKTLMKPLQYECAVCGVRFVHAIHLQEHSLTHDREHSFQCEICDKSFAQETFLQQHLLTHTEARPFECPECYKCFKSSSHLKNHVAIHSGVKPFTCETCSKSFLKQASLRRHQATHVRGNRVPCAVCGKTFLNMEYLRKHTVTHTNVVVTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01353963; iTF_00365979; iTF_00366182; iTF_00858206; iTF_00857854;
90% Identity: iTF_01353963;
80% Identity: iTF_01353963;