Basic Information

Insect: Laodelphax striatellus
Gene Symbol: -
Assembly: GCA_014465815.1
Location: CM025335.1:26569805-26583751[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.4e-06 0.057 14.9 0.1 22 47 369 394 361 400 0.84

2 9 0.042 3.2e+02 2.9 0.4 23 52 398 427 393 430 0.88

3 9 0.00057 4.4 8.8 0.1 21 44 480 503 468 511 0.92

4 9 1.1 8.4e+03 -1.7 0.0 23 52 510 539 505 540 0.77

5 9 0.018 1.4e+02 4.0 0.0 23 44 538 559 533 565 0.88

6 9 0.095 7.4e+02 1.7 0.0 26 48 585 607 574 611 0.83

7 9 0.51 3.9e+03 -0.6 0.0 24 46 684 706 679 712 0.78

8 9 0.00095 7.4 8.1 0.2 23 52 711 740 706 742 0.87

9 9 0.12 9.2e+02 1.4 0.1 23 43 739 759 733 763 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.4e-06	0.057	14.9	0.1	22	47	369	394	361	400	0.84
2	9	0.042	3.2e+02	2.9	0.4	23	52	398	427	393	430	0.88
3	9	0.00057	4.4	8.8	0.1	21	44	480	503	468	511	0.92
4	9	1.1	8.4e+03	-1.7	0.0	23	52	510	539	505	540	0.77
5	9	0.018	1.4e+02	4.0	0.0	23	44	538	559	533	565	0.88
6	9	0.095	7.4e+02	1.7	0.0	26	48	585	607	574	611	0.83
7	9	0.51	3.9e+03	-0.6	0.0	24	46	684	706	679	712	0.78
8	9	0.00095	7.4	8.1	0.2	23	52	711	740	706	742	0.87
9	9	0.12	9.2e+02	1.4	0.1	23	43	739	759	733	763	0.87

Sequence Information

Coding Sequence: ATGTCAATTCTGGTTCCTTATGAAATAATGGATGAGAAAAAACATGAGTGTGAGTCTGTAGCAGTAAAAACTGAACCTTCTAATGCTGAACAAGCCAAACACCACGAAGAACCTCACGAATTCCACAGAAGGAATGGCAATGAAGGAAATCATGAAACTCAACTTCAATTGACATCAGACACGGCCCTTCGAGGTGTCTCGTTTGAAACTCTCGGCCACATGATGGTGCAACAGGGATGTTCGCAGCTTGGCATCCATCCTCCTCCCGGCTACGACTTGCGCCACCACCAAGGAGAGTATCCAGAACCCGTCTGCGAAATTGGAGCATTCAGCAATGGTGCTAGTGCCCCGCAAGGAGCAACTGGAAACCCAACAGACAACAAAGATGCCATTCATCAAAATATAATTGTCTACGATAATGATGAACCCAGCATGCATGAGGTGCCTTGCAATCTCTGCAATGTTACATTCAGTAATACTTTTGCTTTGTTGAACCATACACGTATATCACATAGAGTATTAAAATGTGACGACACATATCAGAATATGATAAGTGTGAGAGCTTCTAGTATTTGTCGTGAGTTTAATGAGGCAAAAACAGGCGCTATCACTACAGCAAATACTAGAGATGTGCCATCAACCGTTGATGAAAGTGCAGTGAAAGCCTTGACAAGTCCACAAATGATTACTCATGGAGTACTTCATCAGATCAATCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGCTCCCTCCAAGCCCCACAGAACCCAGCACGTAATAATGTTCATCCAAACCAGTCTCAGGCGTCACAAGCTATTGAAATTTCTACCACAGTTGCTTCAATTGTTTCATCTCTGGCTCAAGGCACTGGAACTGCAATCACCACAACTAATCAGCCTGCAAGTTCAACAAACAAATATGGAGTGAGAATGTGCGATAAAAGCCAGAATACCATTTCTGTTGCTAGTGTCATAGCATGCAGCCACGTTTGTACGGTTTGCAATAAAGCATTCAACAAACCCTCTGACCTAGTTCGACATAGTATTGTGCACACTGAAGATCGACCTTTCACTTGCGATGTTTGCAGTTCGAGTTTTAGAAATTCCAGCAATCTCAGAATGCACCTGCTAACCCATTCTGATACAAAACCTCATCCGTGCACGGTTTGTGAGAAATCATTCCGCCGACTGTCAGACTTGGAGCGGCATACTTGTTTACACACAGGAGCACGGCCATTCGGCTGCACTATTTGCGGAATGGCATTCACAACCAACTACAACCTAAAGATACACTCAATGAAGCACACTGGCTCCTTACCTTATCCGTGTACTCAGTGCGAGAAGTCGTTCAGCAAGCCTTCAGAACTGCAACGGCATCTAGTGATACACACTGGAGAAAGGCCATTCTCTTGTCCTCAGTGTGGGATGGCGTTTTCCAACTCGAGCAACCTGAGAAATCACATGATCACTCACACAGGCCGTAGGCCATACCCATGCTCCATGTGTGACAAGGCGTTCACTCGGCCGTCTGATGTCAAACGTCACGTACTCATACACACTGGAGCTCGTCCTTTTGCATGCCAAATATGTGGATTAGCTTTTGCAGACTCATCAAATCTTAAGAAGCACACGTTAACACATACAAAAAATAATAAAGGGTTCAACCAAGGCGTAGCATCATCAAATAATGTGCCAGCCGTAGGCGTTCAATGTAATATATGTAGTATAGTGCTTCAAAATCTGAATGAACTGAACAATCATTTAATAGCAGCGCATAGTAACGCTGGATCTGGTGGGTTGGATATGGTCTCCAACAACCGTGGTAATGGTAATCCTAGTGGTGCGAATACAAAAGACAATACAGATGGTAGCGCGTACCAGCCCTCGCAGGTAGTTGTGAAAACCCTGATGAAACCAATGCAGTATGAATGTGCGGTGTGCGGAGTACGTTTTGTGCATGCAATTCACTTACAGGAACATTCTTTGACTCATGATCGTGAACACTCATTCCAATGTGAAATATGCGACAAAAGTTTCGCGCAAGAGACATTTCTACAGCAACATCTGTTGACGCACACTGAAGCGCGCCCTTTCGAGTGCCCGGAATGCTATAAATGCTTCAAGAGCTCGTCGCACCTCAAGAATCACGTAGCCATACACTCTGGTGTGAAGCCATACACCTGTGAAACTTGTAACAAGTCGTTTCTGAAGCAGGCGTCTTTGCGACGTCACCAAGCGACGCACGCACGCGGAAACCGCATTCCTTGTGCCGTTTGTGGAAAGACCTTTCTCAACATGGAGTATCTTCGAAAGCATACTGTTACTCATACAAATGTCGTCGTAACTCAATGA
Protein Sequence: MSILVPYEIMDEKKHECESVAVKTEPSNAEQAKHHEEPHEFHRRNGNEGNHETQLQLTSDTALRGVSFETLGHMMVQQGCSQLGIHPPPGYDLRHHQGEYPEPVCEIGAFSNGASAPQGATGNPTDNKDAIHQNIIVYDNDEPSMHEVPCNLCNVTFSNTFALLNHTRISHRVLKCDDTYQNMISVRASSICREFNEAKTGAITTANTRDVPSTVDESAVKALTSPQMITHGVLHQINHXXXXXXXXXXXXXXXXXXXXXXXXGSLQAPQNPARNNVHPNQSQASQAIEISTTVASIVSSLAQGTGTAITTTNQPASSTNKYGVRMCDKSQNTISVASVIACSHVCTVCNKAFNKPSDLVRHSIVHTEDRPFTCDVCSSSFRNSSNLRMHLLTHSDTKPHPCTVCEKSFRRLSDLERHTCLHTGARPFGCTICGMAFTTNYNLKIHSMKHTGSLPYPCTQCEKSFSKPSELQRHLVIHTGERPFSCPQCGMAFSNSSNLRNHMITHTGRRPYPCSMCDKAFTRPSDVKRHVLIHTGARPFACQICGLAFADSSNLKKHTLTHTKNNKGFNQGVASSNNVPAVGVQCNICSIVLQNLNELNNHLIAAHSNAGSGGLDMVSNNRGNGNPSGANTKDNTDGSAYQPSQVVVKTLMKPMQYECAVCGVRFVHAIHLQEHSLTHDREHSFQCEICDKSFAQETFLQQHLLTHTEARPFECPECYKCFKSSSHLKNHVAIHSGVKPYTCETCNKSFLKQASLRRHQATHARGNRIPCAVCGKTFLNMEYLRKHTVTHTNVVVTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01354290;
90% Identity: iTF_00857854;
80% Identity: iTF_00857854;