Basic Information

Insect: Sogatella furcifera
Gene Symbol: -
Assembly: GCA_014356515.1
Location: chrX:1379594-1393165[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00085 0.044 14.5 0.3 2 23 134 156 133 156 0.96

2 15 2.1e-05 0.0011 19.5 0.5 1 23 327 349 327 349 0.95

3 15 2.2e-06 0.00011 22.6 1.3 1 23 355 377 355 377 0.98

4 15 2e-05 0.001 19.6 3.9 1 23 383 405 383 405 0.96

5 15 1.4e-05 0.0007 20.1 0.5 3 23 413 433 411 433 0.97

6 15 7.5e-07 3.9e-05 24.1 0.3 1 23 439 461 439 461 0.97

7 15 1.6e-08 8.1e-07 29.4 0.3 1 23 467 489 467 489 0.98

8 15 1e-06 5.2e-05 23.7 0.1 1 23 495 517 495 517 0.98

9 15 5.3e-07 2.7e-05 24.6 0.2 1 23 523 545 523 545 0.97

10 15 0.15 7.8 7.4 0.0 2 23 568 590 567 590 0.93

11 15 0.00034 0.018 15.7 0.6 1 23 621 643 621 643 0.98

12 15 1.6e-06 8.1e-05 23.1 0.6 1 23 649 671 649 671 0.99

13 15 2.5e-06 0.00013 22.4 3.9 1 23 677 699 677 699 0.97

14 15 0.00016 0.0085 16.7 1.7 1 23 705 727 705 727 0.98

15 15 0.0035 0.18 12.5 0.2 2 23 734 755 733 755 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00085	0.044	14.5	0.3	2	23	134	156	133	156	0.96
2	15	2.1e-05	0.0011	19.5	0.5	1	23	327	349	327	349	0.95
3	15	2.2e-06	0.00011	22.6	1.3	1	23	355	377	355	377	0.98
4	15	2e-05	0.001	19.6	3.9	1	23	383	405	383	405	0.96
5	15	1.4e-05	0.0007	20.1	0.5	3	23	413	433	411	433	0.97
6	15	7.5e-07	3.9e-05	24.1	0.3	1	23	439	461	439	461	0.97
7	15	1.6e-08	8.1e-07	29.4	0.3	1	23	467	489	467	489	0.98
8	15	1e-06	5.2e-05	23.7	0.1	1	23	495	517	495	517	0.98
9	15	5.3e-07	2.7e-05	24.6	0.2	1	23	523	545	523	545	0.97
10	15	0.15	7.8	7.4	0.0	2	23	568	590	567	590	0.93
11	15	0.00034	0.018	15.7	0.6	1	23	621	643	621	643	0.98
12	15	1.6e-06	8.1e-05	23.1	0.6	1	23	649	671	649	671	0.99
13	15	2.5e-06	0.00013	22.4	3.9	1	23	677	699	677	699	0.97
14	15	0.00016	0.0085	16.7	1.7	1	23	705	727	705	727	0.98
15	15	0.0035	0.18	12.5	0.2	2	23	734	755	733	755	0.95

Sequence Information

Coding Sequence: ATGGATGAGAAAAAGCGTGAGTCTGCAGGAGCAAAAAGTGAATCTTCTAATGCTGAACAAGCCAAACACCACGAAAAATCTCACGAATTTCACAGAAGGAATGGAAATGAAGGAAATCACGAAGCTCAACTCCAATTGACATCAGATCGGGCGCTTGGAAGTGTCTCGTTTGAAACATTGAGCCACATGATGGTGCAGCAGGGATGTTCGCAGCTTGGTATCCAACCTCCTCCCGGCTACCATCACCAAGGAGAGTATCCAGAACCGGTTTGTGAAATCGGAGCATTCAACAATGGTGCCAGTGCCCCACAAGCAGCAACGGCAAATCCAACTGACAAACAAACCATGCATCAAAATATTATTGTTTATGAAAATGAAGAACCAAGCATGCATGAGGTGCCTTGCAATCTTTGTAATGTTACATTCAGTAATACTTTTGCTTTGTTGAATCATACACGTATATCACATAGAGTACTAAAATGTGATGATACCTACCAGAATATGATAAGTGTGAGAGCTTCAAGTATTTGTCGCGAATTTAATGAGGCAAAAACAGGTGCAATCACTTCAGCAAATACTAGGGATGTGCCATCAACCGTTGATGAAAGTGCAGTTAAGGCCTTGACAAGTCCGCAAATGATTAACCATGGAGTACTGCATCAGATCAATCACCATCAGAATCAAAACACTTTACATCAGCAGCAACAACAACAACAACAACAGCAAAGTTCTCTTCAAGCACCGCAGACTGCAGTACGTAACACTGTTCATCAAAACCAGTCGCAGACATCACAAGCTGTTGAAATTGCTACCACAGTAGCTTCAATTGTATCATCTCTGGCTCAAGCCACCGGAACAGCCATAACAACTACTAATCAGCCTGCAAGTTCAACAAACAAATTTGGAGTTAGAATGTGCGATAAAAGCCAGAATACTGTTTCTGCTGCTGCTGCTGCTGCTAGTGTAATAGCTTGCACCCACGTATGTACTGTTTGCAATAAAGCTTTCAACAAACCCTCTGACTTGGTCCGTCATAGTATTGTGCACACCGAAGATCGTCCTTTCACTTGCGATGTTTGTAATTCAAGCTTTCGAAACTCTAGCAATCTGAGAATGCATCTGCTCACCCATTCTGACACAAAGCCTCATCCATGCACTGTTTGTGAAAAATCTTTCCGCCGACTTTCTGACTTGGAGCGTCATACTTGTTTGCATACAGGAGCACGGCCATTTGGTTGTACAATTTGCGGAATGGCATTCACAACCAACTACAACCTAAAGATACACTCAATGAAGCATACTGGATCCTTACCATACCCTTGTACTCAATGTGAGAAGTCGTTCAGCAAGCCTTCAGAACTGCAACGGCATCTAGTGATACACACTGGAGAAAGGCCATTCTCTTGTCCTCAGTGTGGAATGGCGTTTTCAAATTCGAGTAATTTGAGAAATCACATGATCACACACACTGGTCGTAGGCCATACCCATGCTCTATGTGTGACAAGGCATTCACGCGGCCGAGCGATGTCAAGCGTCATGTTCTCATTCACACTGGAGCTCGTCCTTTTGCATGCCAAATTTGTGGATTAGCTTTTGCTGACTCGTCCAATCTTAAGAAGCACACATTAACACATACAAAAAACAATAAAGGCTACAACCAAGGTGTGGCATCATCCAATAACGTGCCAGCCGTAGGCGTGCAGTGTAATATATGTAGTGTAGTGCTGCAAAATCTCAATGAATTGAACAATCATCTAATAGCAGCGCATAGTAATGCTGGATCCGGAAAAGACAATACAGATGGCAGCGCTTATCAGCCGTCTCAGGTAGTTGTCAAAACCCTGATGAAACCATTGCAGTACGAATGTGCCGTCTGTGGAGTTAGGTTTGTGCATGCAATTCACCTGCAGGAACACTCTTTGACTCATGATCGTGAACACTCATTCCAATGTGAAATATGCGACAAAAGTTTTGCACAAGAGACATTTCTACAGCAACATCTTTTGACACACACTGAAGCGCGACCTTTTGAATGTCCAGAATGCTATAAATGCTTCAAGAGCTCATCTCACCTAAAAAATCACGTCGCCATACACTCCGGTGTTAAACCGTTTACGTGTGAAACTTGCAGCAAGTCGTTTCTGAAACAGGCATCATTGAGACGTCATCAGGCAACACATGTACGCGGCAACCGAGTACCTTGTGCTGTGTGCGGCAAAACCTTTCTCAACATGGAGTATCTCCGCAAGCATACTGTTACTCATACAAATGTCGTCGTAACTCAATGA
Protein Sequence: MDEKKRESAGAKSESSNAEQAKHHEKSHEFHRRNGNEGNHEAQLQLTSDRALGSVSFETLSHMMVQQGCSQLGIQPPPGYHHQGEYPEPVCEIGAFNNGASAPQAATANPTDKQTMHQNIIVYENEEPSMHEVPCNLCNVTFSNTFALLNHTRISHRVLKCDDTYQNMISVRASSICREFNEAKTGAITSANTRDVPSTVDESAVKALTSPQMINHGVLHQINHHQNQNTLHQQQQQQQQQQSSLQAPQTAVRNTVHQNQSQTSQAVEIATTVASIVSSLAQATGTAITTTNQPASSTNKFGVRMCDKSQNTVSAAAAAASVIACTHVCTVCNKAFNKPSDLVRHSIVHTEDRPFTCDVCNSSFRNSSNLRMHLLTHSDTKPHPCTVCEKSFRRLSDLERHTCLHTGARPFGCTICGMAFTTNYNLKIHSMKHTGSLPYPCTQCEKSFSKPSELQRHLVIHTGERPFSCPQCGMAFSNSSNLRNHMITHTGRRPYPCSMCDKAFTRPSDVKRHVLIHTGARPFACQICGLAFADSSNLKKHTLTHTKNNKGYNQGVASSNNVPAVGVQCNICSVVLQNLNELNNHLIAAHSNAGSGKDNTDGSAYQPSQVVVKTLMKPLQYECAVCGVRFVHAIHLQEHSLTHDREHSFQCEICDKSFAQETFLQQHLLTHTEARPFECPECYKCFKSSSHLKNHVAIHSGVKPFTCETCSKSFLKQASLRRHQATHVRGNRVPCAVCGKTFLNMEYLRKHTVTHTNVVVTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01354290;
90% Identity: iTF_01354290;
80% Identity: iTF_01354290;