Samb045999.1
Basic Information
- Insect
- Scoparia ambigualis
- Gene Symbol
- -
- Assembly
- GCA_963921215.1
- Location
- OY992513.1:29341373-29342584[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-10 2.4e-07 32.6 0.0 1 36 10 45 10 46 0.93
Sequence Information
- Coding Sequence
- ATGGACAGAAAGAAACGCAAGTGTTATACTGATACTCAGGTGGCTGAAGCACTTTCATCAATCCGACAAGGCATGAGCATTTACAAAGCTTCAAAACAATATAATGTGCCAGAGACTACGCTACGGAACAAACGAGATGATCTTTATGTCAATGAAAAGTGTGGTAAACAACCAGTACTTAAGTTAAACGAAGAGAAGCAAATCGTTGATTGGATCCATTTCCTTAATAAATATGGATTTCCAGTGACTAAAGGACAGTTGCTACACACTGTTTGTAAGTTAGTTAAAAACCTCAATCGCCCCAATCCGTTTAAAGATGGAGTTCCCGGAAAGAACTGGTTTTTGGGTTTTATGCAACGACATCCAGCAGTGTCAAAACGTGTAGCACAAAATCTTCCAACAAGTCAAAACCAAGTTACAGAAGAAGCACTGCGGGCGTGGTTTGATCGAGTACACACACATTTTAAAGAGAACGACTTGCTACAAGTTTTTAAAGATCCAAAACGCATCTTCAACTGCGATGAAACTGggttttttctttgtccaaaAGGCAATCAAGTTTTGGTGAAAAGGGGCAGCAAACGAGTATACAATCGCGTTGCAAACGATGAAAAAGAATGCTTGACCGTATTAGTCAATGCGTCAGCAGATGGTAAAATAGCCCCCCCAATGGTGCTTTTTCCTTACAAGAAACTACCCAACAACATCAAGACAACAGTTCCTTCCTGGTGGGGACTTGGCAACACTGAATCGGGCTGGATGGACATGGAGTCATTTTACGAATATGTTGCAAATGTGTTTTACCCATGGCTCCTACAGCAAAAAATAACACTGCccgttgttttatttttagacgGCCATACTTCACATATATCTCTGCCTTTAACAACTTTTTGCAAGGAAAAAGGGATCGTGCTAGTCGCTCTGCTTCCAAATTCAACCCACGTCTTGCAGCCTCTTGACGTCGCCGTTTATAGGTCGGTTAAAGGTACTTGGAGGGATATTGTGCGGGAATTCAGAGTTAAGCATAACTATGCCAAACTTAAGCGCACAGACTTTTCTTTTGAAGTGCAAAAATGCTTTGATAGAAGCCTCAAGCCTGAAACAATAAAAAGCGGTTTCAAATGTTGCGGTCTTTACCCTTTTGATCAGCAAAACATTGACTATGACAAACTTTTGTCCAAAGTGAAGAAATCAAAACAAAGAGTCTGA
- Protein Sequence
- MDRKKRKCYTDTQVAEALSSIRQGMSIYKASKQYNVPETTLRNKRDDLYVNEKCGKQPVLKLNEEKQIVDWIHFLNKYGFPVTKGQLLHTVCKLVKNLNRPNPFKDGVPGKNWFLGFMQRHPAVSKRVAQNLPTSQNQVTEEALRAWFDRVHTHFKENDLLQVFKDPKRIFNCDETGFFLCPKGNQVLVKRGSKRVYNRVANDEKECLTVLVNASADGKIAPPMVLFPYKKLPNNIKTTVPSWWGLGNTESGWMDMESFYEYVANVFYPWLLQQKITLPVVLFLDGHTSHISLPLTTFCKEKGIVLVALLPNSTHVLQPLDVAVYRSVKGTWRDIVREFRVKHNYAKLKRTDFSFEVQKCFDRSLKPETIKSGFKCCGLYPFDQQNIDYDKLLSKVKKSKQRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00044391; iTF_01316286; iTF_00075437; iTF_00075451; iTF_00076437; iTF_00677501; iTF_00345749; iTF_01525892; iTF_00358472; iTF_00771816; iTF_01264363; iTF_01361526; iTF_00825599;
- 90% Identity
- -
- 80% Identity
- -