Sexi011319.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- clz9
- Assembly
- GCA_011316535.1
- Location
- CM022052.1:3143624-3144862[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-11 2.4e-08 33.9 0.1 1 36 10 45 10 46 0.92
Sequence Information
- Coding Sequence
- ATGGCCAGAAAGAAACGCAAGTGTTATACTAATGCCCAAGTGGCTGAAGCACTTTCATCAATTCGACAAGGTATGAGTATTTACAAAGCCTCGAGACAGTATAATATACCAGAGACTACATTACGGAATAAACGAGATGACATTTACGAGAATGAACATTGTGGTAAGCAACCAGTACTTAAACTAAACGAAGAAAGACAAATCGTTGATTGGATCCATTACCTTGGTAAATGTGGCTTTCTAGTTACTAAGAATCAATTATTACACACTGTCTCTAAGTTAGTTGAAAACCTGCAGCGCCCTAATCCGTTTAAAGATGGAGTTCCTGGAAGGGGATGGTTTTCAGGGTTTATACTACGACATCCAACAGTGTCAAAACATCTGGCACAAAATCTTCCAGCAAGTGGAAACCAAGTCACGGAAGTTGCATTGCGAGCGTGGTTTGATAGGGTACGAtcatatttcaaagaaaacgATTTGCTGCAAGTTCTTCAAGATCCAAAACGTATATTCAGCTGCGATGAAACTGGATTTTTTCTTTGTCCGAAAGACAAGCAAGTTTTGGTAAAAAAGGGTAGTAAACGAGAATATAACCGAGTTGCAAATGATGAAAAAGAATGTTTGACCGTTTTAGTCAATGTGTCAGCAGATGGTAATGTAGCTCCGCCAATGGTACTCTTCCCCTACAAGAGGCTACCTAACAATATCAAGTCAACAGTTCCTTCGTCGTGGGGACTTGGTAACACAGAATCAGGCTGGATGACAATGGATTCGTTCTATGAATATGTTGCAAATGTGTTTTACCCATGGCTTCAACAACAGGAAATAACACTGCCCGTTGCTTTATTTTTAGATGGCCATAGTTCACATATATCTCTGCCTTTAACAACTTTTTGCAAGGAAAAAGGAATTGTACTAGTTGCTTTGCTCCCAAATTCAACACACGTGTTGCAGCCTCTTGATGTCGCCGTTTTCAGGCCCGTTAAGGGGACTTGGCGGGATATTGTGAGGGAATTTAgggttgaaaataattatgcgAAGCTTAAGCGTACAGACTTTTGTAGAGAAGtacaaaaatgttttcacaGAAGCCTCAAGCCTGAAGCAATAATGGGCGGATTCAAATGCTGCGGACTTTACCCGTTTGGTGAACAAAATATTGACTATGATAAACTTTTGTCAAAAGTGAAAAAACACCAAGACAATCAACAGATGAGCAATATAGATAACAATGAGTAG
- Protein Sequence
- MARKKRKCYTNAQVAEALSSIRQGMSIYKASRQYNIPETTLRNKRDDIYENEHCGKQPVLKLNEERQIVDWIHYLGKCGFLVTKNQLLHTVSKLVENLQRPNPFKDGVPGRGWFSGFILRHPTVSKHLAQNLPASGNQVTEVALRAWFDRVRSYFKENDLLQVLQDPKRIFSCDETGFFLCPKDKQVLVKKGSKREYNRVANDEKECLTVLVNVSADGNVAPPMVLFPYKRLPNNIKSTVPSSWGLGNTESGWMTMDSFYEYVANVFYPWLQQQEITLPVALFLDGHSSHISLPLTTFCKEKGIVLVALLPNSTHVLQPLDVAVFRPVKGTWRDIVREFRVENNYAKLKRTDFCREVQKCFHRSLKPEAIMGGFKCCGLYPFGEQNIDYDKLLSKVKKHQDNQQMSNIDNNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334718;
- 90% Identity
- iTF_01525892;
- 80% Identity
- -