Schi004853.1
Basic Information
- Insect
- Schlechtendalia chinensis
- Gene Symbol
- bab1
- Assembly
- GCA_019022885.1
- Location
- CM032348.1:1468310-1476533[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-16 1.1e-12 47.9 0.0 1 41 28 69 28 73 0.93 2 2 0.34 7.5e+02 0.4 0.4 6 15 158 167 154 184 0.79
Sequence Information
- Coding Sequence
- ATGTGGCAGAAGTGTTGGAACACCAACCAGAGTCTCGTGCACAACCTGCGGTTCAGAGAACGCGGTCCGCTCAAGTCGTGGAGACCCGAAACGATGGCCGAGGCCATACTGTCCGTGCTCAAGGAGGGCCTGTCCCTGTCCCAGGCCGCCCGCAAGTACGACATACCCTATCCGACGTTCGTCCTGTACGCCAACCGCGTGCACAACCTGCTCGGGCCTTCCGCGGACGGCGGTGCAGACCTGAGGCCTAAAGGCAGAGGACGTCCTCAACGGATACTATTGGGATTCTGGCCGGAAGATCACATTCAAAACGTCATCAGGACCGTCGTGTTCAGAGACGCGCAAAATATCAAAGAAGAAGCGTTACATCTTTACCCCAGAATACCCTGTCTGTCCGACCCGATGTCCGGCGGTCATTACGGCAACAGCGCGGTCCAAACCGTGGACGGTCCCGTGTCGCCGAACTCCGCCGCGGCCGCCGTGGCGGCCGTCGCGCAGGGCATACGGCAACAGATGATGGCCGCGGCCGGGCACAACATTTCGCCGTCGTCGGGCGTCGACGCGTTCGCCTTGCTCGCCTCCACGCACCTTCCCAGTCCGGTGGACATGTCGCCCAACTCGTCGCCGCCCGATTCGCCGCTGGTGTCCAACAACAACGTCGAGGTCAGCCTGAGCGGCTACAAGAGATCCATCGACCACTCCAACCAAGACAACGTGTTCGTCGAAGACATCGACGAGCTCGTGCAGAACAGCCATTGTACCGGAGGCTCGTCAATGGGCAACACCCTCGATCAACAGCCGCTGCCAAACAGTTTTTTATATCTGATGTGCGTCGAGGTTTACCAAAAAAAAAAAAAAAAAAGACTACACGACGTAGTGCCTACTCCAAATGTACAACAGCATTCGATATAA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNLLGPSADGGADLRPKGRGRPQRILLGFWPEDHIQNVIRTVVFRDAQNIKEEALHLYPRIPCLSDPMSGGHYGNSAVQTVDGPVSPNSAAAAVAAVAQGIRQQMMAAAGHNISPSSGVDAFALLASTHLPSPVDMSPNSSPPDSPLVSNNNVEVSLSGYKRSIDHSNQDNVFVEDIDELVQNSHCTGGSSMGNTLDQQPLPNSFLYLMCVEVYQKKKKKRLHDVVPTPNVQQHSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00308755;
- 90% Identity
- iTF_01037642; iTF_01169767; iTF_01304776; iTF_01432937; iTF_01499566; iTF_01031865; iTF_00468862; iTF_00940287; iTF_01346992; iTF_00308755;
- 80% Identity
- -