Nrib013797.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- bab1
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010000135.1:15624-34574[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-15 1.5e-12 47.9 0.0 1 41 55 96 55 100 0.93 2 2 1.9 9e+02 0.5 0.3 6 15 185 194 180 211 0.78
Sequence Information
- Coding Sequence
- ATGTTTGAAAGTTCTCAAGCCTGGCTCGCATCCACGTCTTCGCCAATGACATCCGACAGTTACCAGTACCAACTGCAGTCCATGTGGCAAAAGTGCTGGAACACCAACCAGAGTCTTGTGCACAACCTGCGGTTCAGAGAGCGCGGTCCTCTCAAATCATGGAGACCAGAGACGATGGCCGAGGCCATACTGTCCGTGCTCAAGGAGGGCTTGTCGCTGTCGCAGGCCGCAAGGAAATACGACATACCGTATCCGACGTTCGTGCTGTACGCCAACCGGGTGCACAACTTGCTCGGTCCCTCCGCAGATGGTGGCGCAGACTTAAGGCCTAAAGGCAGAGGACGTCCTCAAAGGATATTGTTAGGATTTTGGCCAGAAGATCACATTCAAAATGTAATCAGGACTGTTGTGTTCAGAGATGCACAAAACATCAAAGAAGAAGCATTACACCTCTACCCAAGAATACCGTGTTTATCCGACCCAATGTCTGGTGGTCACTATGGTAACAACGCGGTTCAGTCGGTTGAAGGGCCCGTGTCGCCAAACTCAGCCGCGGCCGCTGTGGCCGCCGTCGCGCAGGGTATACGGCAGCAAATGATGGCCGCCGCCGGACATAACATCTCTCCTTCTTCGGGTGTCGACGCGTTCGCCCTACTCGCCTCTTCGCACCTACCCAGTCCGGCTGACATGTCACCCAATTCGTCTCCACCCGATTCACCGTTAGTTTCCAACAACAACGTCGAGGTGAGCCTAAGCGGTTACAAGCGATCCATCGACCACTCCAACCAAGACAACGTGTTCGTTGAAGACATTGATGAGCTCGTGAAGAACAGCCATTGTACCGGAGGCTCGTCAATGGGCAACACCATCGATCAGCAGCCGTTGCCGTTAGTCATCGAGCAACGGACCGAATAA
- Protein Sequence
- MFESSQAWLASTSSPMTSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNLLGPSADGGADLRPKGRGRPQRILLGFWPEDHIQNVIRTVVFRDAQNIKEEALHLYPRIPCLSDPMSGGHYGNNAVQSVEGPVSPNSAAAAVAAVAQGIRQQMMAAAGHNISPSSGVDAFALLASSHLPSPADMSPNSSPPDSPLVSNNNVEVSLSGYKRSIDHSNQDNVFVEDIDELVKNSHCTGGSSMGNTIDQQPLPLVIEQRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00308755;
- 90% Identity
- iTF_01330478;
- 80% Identity
- iTF_00940287;