Cova011960.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- bab1
- Assembly
- GCA_032441825.1
- Location
- CM063736.1:2143664-2163590[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-16 1e-12 47.9 0.0 1 41 54 95 54 99 0.93 2 2 0.47 7.1e+02 0.4 0.4 6 15 184 193 180 210 0.79
Sequence Information
- Coding Sequence
- ATGTTCGAAACTTCTCAAGCCTGGCTCGCTTCCACGCCCATGACTTCGGCCGACAGCTACCAATACCAGCTGCAGTCGATGTGGCAAAAGTGTTGGAACACCAACCAAAGTCTCGTACACAACTTACGGTTCAGAGAACGCGGTCCCCTCAAGTCGTGGAGGCCCGAAACCATGGCCGAGGCAATACTGTCCGTGCTCAAGGAAGGCCTGTCCCTGTCCCAGGCCGCACGCAAGTACGACATACCCTACCCGACGTTCGTGCTGTACGCCAACCGCGTGCACAATCTGCTCGGCCCTTCCGCGGACGGCGGTGCAGACTTGAGGCCTAAAGGCAGAGGACGTCCTCAACGAATATTATTGGGATTCTGGCCGGAAGATCACATCCAGAACGTTATCAGGACCGTTGTGTTCAGAGACGCGCAAAACATCAAAGAAGAAGCGTTACACCTGTACCCCAGATTACCGTGTTTGTCCGACCCAATGTCTGGCGGTCACTACGGCAACAACGCGGTCCAGTCCGTAGACGGTCCCGTGTCGCCAAACTCTGCCGCGGCAGCCGTGGCCGCCGTCGCGCAAGGCATACGACAACAAATGATGGCTGCCGCCGGGCACAACATTTCTCCTTCGTCCGCGGGCGTCGACGCGTTCGCCTTACTCGCCTCTTCGCACCTTCCCAGTCCGGTCGACATGTCGCCCAACTCGTCTCCGCCCGATTCGCCGTTAGTGTCCAACAACAATGTCGAGGTCAGTCTGAGCGGTTACAAGAGATCCATCGACCACTCCAACCAAGACAATGTGTTTGTCGAAGACATCGACGAGCTCGTGAAGAACAGCCATTGTACCGGAGGCTCGTCTATGGGTAACACCCTGGACCAGCAGCCGTTGCCGTTAGTCATTGAGCAACGgaccgaataa
- Protein Sequence
- MFETSQAWLASTPMTSADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNLLGPSADGGADLRPKGRGRPQRILLGFWPEDHIQNVIRTVVFRDAQNIKEEALHLYPRLPCLSDPMSGGHYGNNAVQSVDGPVSPNSAAAAVAAVAQGIRQQMMAAAGHNISPSSAGVDAFALLASSHLPSPVDMSPNSSPPDSPLVSNNNVEVSLSGYKRSIDHSNQDNVFVEDIDELVKNSHCTGGSSMGNTLDQQPLPLVIEQRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037642; iTF_01169767; iTF_01304776; iTF_01432937; iTF_01499566; iTF_01031865; iTF_00468862; iTF_00940287; iTF_01330478; iTF_01346992;
- 90% Identity
- iTF_01330478;
- 80% Identity
- -