Smay005877.2
Basic Information
- Insect
- Sipha maydis
- Gene Symbol
- bab1
- Assembly
- GCA_034509805.1
- Location
- JASXSY010000357.1:210030-217500[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-15 2.1e-12 47.7 0.0 1 41 88 129 88 133 0.93 2 2 1.4 1.3e+03 0.4 0.3 6 15 213 222 208 239 0.78
Sequence Information
- Coding Sequence
- ATGTTCGATGTGGATAATTCGTTGTTGTTATTTGTACGTACGTCCCTTTCGGTGTGCTGCCGAAACGCGTGTTCAACTTTTTCATTAACCATCGCACACGATCCGAATGATCCCGTAGCGCGGCCGTACGGTCATCGCGTTGTCGAGAGcgCCGACAGTTACCAGTACCAGCTGCAGTCCATGTGGCAAAAGTGCTGGAACACCAACCAGAGCCTGGTGCACAACCTGCGGTTCAGAGAACGCGGCCCGCTGAAGTCGTGGAGACCCGAGACCATGGCCGAGGCCATACTGTCCGTGCTCAAGGAGGGCCTGTCGCTGTCCCAGGCCGCCCGCAAGTATGACATACCGTATCCGACGTTCGTGCTGTACGCCAACCGAGTGCACAACCTACTCGGGCCTTCCGCAGACGGCGGCGCAGGCAGAGGACGTCCTCAACGGATATTATTAGGATTCTGGCCAGAAGATCACATTCAGAACGTTATCAGAACTGTCGTATTCCGAGACGCGCAAAATATCAAAGAAGAAGCATTACACCTATACCCAAGAATACCGtgtTTGTCCGACTCCATGTCTGGCGGTCACTATGGAAACAATGCGGTTCAGTCGGTGGAAGGCCCCGTGTCACCAAACTCTGCCGCCGCAGCCGTGGCCGCCGTCGCGCAGGGTATACGGCAGCAAATGATGGCCGCTGCCGGACACAACATCTCTCCTTCGTCGGGCGTCGACGCGTTCGCGCTGCTCGCCTCTTCTCACCTACCCAGTCCGGCCGACATGTCGCCGAATTCGTCACCGCCAGATTCGCCGCTAGTGTCTAACAACAATGTTGAGgtCAGCCTGAGTGGTTACAAGAGATCTATTGATCACTCTAACCAAGACAACGTGTTCGTCGAAGACATCGATGAGCTGGTGAAAAACAGCCATTGCACCGGAGGCTCGTCAATGGGCAACACCATCGATCAGCAGCCGTTGCCGTTAGTCATTGAGCAACGGACCGAATGA
- Protein Sequence
- MFDVDNSLLLFVRTSLSVCCRNACSTFSLTIAHDPNDPVARPYGHRVVESADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNLLGPSADGGAGRGRPQRILLGFWPEDHIQNVIRTVVFRDAQNIKEEALHLYPRIPCLSDSMSGGHYGNNAVQSVEGPVSPNSAAAAVAAVAQGIRQQMMAAAGHNISPSSGVDAFALLASSHLPSPADMSPNSSPPDSPLVSNNNVEVSLSGYKRSIDHSNQDNVFVEDIDELVKNSHCTGGSSMGNTIDQQPLPLVIEQRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00308755;
- 90% Identity
- iTF_01330478;
- 80% Identity
- -