Stum006822.1
Basic Information
- Insect
- Scaptomyza tumidula
- Gene Symbol
- su(Hw)
- Assembly
- GCA_035044465.1
- Location
- JAWNNW010000445.1:506084-509916[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00064 0.045 14.2 2.2 1 20 272 291 272 293 0.94 2 12 2.6e-06 0.00019 21.7 0.4 3 23 344 365 342 365 0.93 3 12 0.064 4.5 7.9 0.1 1 23 371 393 371 393 0.96 4 12 7.2e-07 5.1e-05 23.5 2.5 1 21 400 420 400 421 0.95 5 12 7.1e-06 0.0005 20.3 0.8 2 23 433 454 432 454 0.96 6 12 0.0001 0.0071 16.7 5.3 1 23 465 487 465 487 0.99 7 12 7.7e-05 0.0055 17.1 0.9 1 23 493 515 493 515 0.97 8 12 1.6e-05 0.0011 19.3 0.8 1 23 521 543 521 543 0.99 9 12 1.4e-06 0.0001 22.5 3.0 1 23 549 571 549 571 0.98 10 12 0.00016 0.011 16.1 0.7 1 23 575 597 575 597 0.96 11 12 0.00014 0.01 16.2 0.1 1 20 605 624 605 629 0.93 12 12 4.8e-05 0.0034 17.7 0.3 3 23 648 669 646 669 0.96
Sequence Information
- Coding Sequence
- ATGATTGGTcacatttttttcaaaacagaTGATCGACTGAGTACGAAACCTGTGAATAGTCAGACGCTAGCGCCATTGTGTACGCTTACGTGCCTGTGCTTGTGCTGCAAACCACGACTTTCAATGAGCGCTAAAAAGGAAACCACGGACGCGACCACTCTTGGCTCCAGCAGAAATGGTGGAGGCGCAGTGATCAAAGTCATCGAGattgaaaaactttcaaagGCCAAGGACAAACGCACTGGCACACGCATGAAGCTGCTCAACGATTTACCTGCTGCTGTAACTCCTAAAGCCAAAACTTCGCCTCGCGTCAAGCAGGAGAAACGCACTAGTATCAAAATACTTAACAACGATGAATCAGCGATCAGTCCGAAAGGCAGCAATGAGCGGCGCTCCGCTGGCAAAACAACAGTAAGTCCTGCCGTCAAGATATTAAATGAGAAGCGTATTTCGGCCCCGTCTACGCCTGCGGAGACAGCCAAGATAAAGACATCGCctagcaaaaagaagaaaatggaTCACTATGTGCTGCAGGCAATCAAGAGCGAAAACAGCAAATCGGAAAGCACGTCGAACATCACGGTGGAAATCGATGACGAGGACGATACTATTGACTTTATACTCGCCGATGATGACGCTGAATCGGGTGCGGCAAAGCAGAACGACGATGAGTTTGTTGTGTCTGCCGTGGAGGAGGATGATgacgaagatgatgatgacgacgacgaagatGAGGGCACAGGTGACGGTGAAGGGAGTGGAAAAAACCGAAACACTGGCAATAACAACGAACTCAAGGAAATGGTAGAGCATGTGTGCGGCAAATGCTACAAGACATTCCGGCGCGTGAAGAgccttaaaaaacatttggaaTTCTGTCGCTATGACAGCGGTTATCATCTACGCAAAGCAGACATGCTGAAGAATCTGGAGAAGATAGAAAAAGATGCGGTGGTCATGGAGAAGAAGGACATATGTTTCTGCTGCAGCGAAAGCTACGACACCTTTCATCTGGGTCACATCAATTGCCCCGATTGCCCTAAGTCATTTAAGACACAGACAAGCTACGAGCGTCACATCTTCATAACTCACTCCGAGTTCAATGATTATCCCTGCTCCATTTGCAATGCCAAATTGCGCAGCGATGCTTTACTAAAACTGCACGAACAGCAGCATCAATTGCGTGGTAAGCCCTTTGCCTGCAAGATCTGTGGCAAAGATTTTACGCGCTCGTATCACTTGAAGCGCCACCAGAAGTATTCGTCGTGCTCGGCCAACGAGAATGATACCATGAGCTGCAAGGTGTGCGATCGCGTCTTCTTTCGCCTGGACAATCTACGCGCCCATCTCAAGCAGCATTTGGGCACTCAGGTGGTAAAAAAGCCCGAATACATGTGTCATGTGTGCAAAAATTGCTTCTACAGCTTATCAACGCTTAACATACATATACGCACCCACACTGGCGAGAAGCCTTTCGATTGTGATCTGTGCGATAAGAAGTTTTCGGCCTTGGTGGCACTCAAGAAGCATCGTCGTTATCACACCGGCGAGAAACCCTACACCTGTACAGTGTGCAGTCAATCTTTTGCTGTTAAGGAGGTGCTTAATCGCCATATGAAACGGCATACGGGCGAACGTCCACACAAATGCAACGAGTGTGGCAAGAGTTTCATTCAGGCCACACAGTTGCGTACGCATTCCAAGACGCATTTGCGTCCCTACGCCTGCACCAGTTGCCCTGAAAAGTTCAAAACAGAGAAACAACTCGAGCGTCACGAAAAGGAACATTCACGGCAGAAACGACGCTCTTTTCCCTGTACGGAGTGCTCACGGAGTTTCCGCTCCAGTGCGTTGCTTAAGGAACATGTTGATGCTGGCGATCATTCGCCTAAACCTACACGTGCTAAGCGTTCGGCAAAGACTATTGAGCGTACAGATTGCGCAATCTGCGACAAGAACTTCGATAGCACTGAAACGCTCAGGAATCACATACGGTCCGTGCACGAATGTGATCCAGATGATATCTTTGGCACAGAGCCACCACCCGCAAAACGCAGGGCTAGAAAGACCGTGCAGGTGTTGGAGACAATTGAAGGAGAAGACGAGGAAGAGGCAAACGAGACGGCTGCCAACACATCCGCGGGATCACTCATATCCAGTAAAACGGATGGCAATGGTGTTGTGGTGCGCGAGTTTCTGGTGGATGAAGGCGACGGCAGCACACAGACAATTCTGCTCGAAAATGAAGTGTACACGATTTTGCCATTGGAGGGTGCCGGTGCAACTGAAGCGTCAGTCGAAGGTGACGTCAAGGCAGAGTCTAAGGATAATCAAAAGCAATCCGTATCACCCGTTGTCAAGAAGGAGCAGCGCAAATCACTGGCCGCAAGCTTGGCAGCTGCCATTGCGGATAATCAGGATGAGCCGTTGAGCGATGATGATTTCAGTGGCGAAGTGCTCACCGAAGATGATCTTAAGTTGAAGGAGAATATAGCCAAGTTAATTGACATGCTGGTGGATTCAGACACACTTAAGAAATATGGCTGGCCAAACAGCCCCGAGGAGTCAGTCCTTTGCAAGGTCATTGAAAATTGTGGTTATGATCTAAACAAGGGAGGCGAGAACTATTCTGAATTGGATTATGGCAGTCGTATGCGCGAGTATTGCAAACTTCTGTTTACGGTGGTAATTCACAATGATTCCATCAAGTCACTACTAAACAATTTCCCCATTGACGATGTCATTGAATATGTGTTGGGTGATGAGGATCAAGACCAAGACATGGAAAAGGACAAAGACAAGGAGACAGAGAAATCAGAGACAGGCACTGTGCCGCCCGATCCCGTTGAAGCTGAGGCTTAA
- Protein Sequence
- MIGHIFFKTDDRLSTKPVNSQTLAPLCTLTCLCLCCKPRLSMSAKKETTDATTLGSSRNGGGAVIKVIEIEKLSKAKDKRTGTRMKLLNDLPAAVTPKAKTSPRVKQEKRTSIKILNNDESAISPKGSNERRSAGKTTVSPAVKILNEKRISAPSTPAETAKIKTSPSKKKKMDHYVLQAIKSENSKSESTSNITVEIDDEDDTIDFILADDDAESGAAKQNDDEFVVSAVEEDDDEDDDDDDEDEGTGDGEGSGKNRNTGNNNELKEMVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDYPCSICNAKLRSDALLKLHEQQHQLRGKPFACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFFRLDNLRAHLKQHLGTQVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYTCTVCSQSFAVKEVLNRHMKRHTGERPHKCNECGKSFIQATQLRTHSKTHLRPYACTSCPEKFKTEKQLERHEKEHSRQKRRSFPCTECSRSFRSSALLKEHVDAGDHSPKPTRAKRSAKTIERTDCAICDKNFDSTETLRNHIRSVHECDPDDIFGTEPPPAKRRARKTVQVLETIEGEDEEEANETAANTSAGSLISSKTDGNGVVVREFLVDEGDGSTQTILLENEVYTILPLEGAGATEASVEGDVKAESKDNQKQSVSPVVKKEQRKSLAASLAAAIADNQDEPLSDDDFSGEVLTEDDLKLKENIAKLIDMLVDSDTLKKYGWPNSPEESVLCKVIENCGYDLNKGGENYSELDYGSRMREYCKLLFTVVIHNDSIKSLLNNFPIDDVIEYVLGDEDQDQDMEKDKDKETEKSETGTVPPDPVEAEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01325058;
- 90% Identity
- iTF_01325795; iTF_01327299; iTF_01321323; iTF_01322073;
- 80% Identity
- -