Basic Information

Insect: Scaptomyza flava
Gene Symbol: su(Hw)
Assembly: GCA_003952975.1
Location: RKRM01000412.1:49006-53078[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00053 0.04 14.2 2.2 1 20 228 247 228 249 0.94

2 12 2.2e-06 0.00017 21.7 0.4 3 23 300 321 298 321 0.93

3 12 0.0075 0.57 10.6 0.1 1 23 327 349 327 349 0.97

4 12 6e-07 4.6e-05 23.5 2.5 1 21 356 376 356 377 0.95

5 12 5.9e-06 0.00045 20.4 0.8 2 23 389 410 388 410 0.96

6 12 8.3e-05 0.0063 16.8 5.3 1 23 421 443 421 443 0.99

7 12 6.5e-05 0.0049 17.1 0.9 1 23 449 471 449 471 0.97

8 12 1.3e-05 0.00099 19.3 0.8 1 23 477 499 477 499 0.99

9 12 1.2e-06 9e-05 22.6 3.0 1 23 505 527 505 527 0.98

10 12 3.8e-05 0.0029 17.8 0.8 1 23 531 553 531 553 0.96

11 12 7.7e-05 0.0059 16.9 0.2 1 21 561 581 561 585 0.91

12 12 1.8e-05 0.0013 18.9 0.3 3 23 604 625 602 625 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00053	0.04	14.2	2.2	1	20	228	247	228	249	0.94
2	12	2.2e-06	0.00017	21.7	0.4	3	23	300	321	298	321	0.93
3	12	0.0075	0.57	10.6	0.1	1	23	327	349	327	349	0.97
4	12	6e-07	4.6e-05	23.5	2.5	1	21	356	376	356	377	0.95
5	12	5.9e-06	0.00045	20.4	0.8	2	23	389	410	388	410	0.96
6	12	8.3e-05	0.0063	16.8	5.3	1	23	421	443	421	443	0.99
7	12	6.5e-05	0.0049	17.1	0.9	1	23	449	471	449	471	0.97
8	12	1.3e-05	0.00099	19.3	0.8	1	23	477	499	477	499	0.99
9	12	1.2e-06	9e-05	22.6	3.0	1	23	505	527	505	527	0.98
10	12	3.8e-05	0.0029	17.8	0.8	1	23	531	553	531	553	0.96
11	12	7.7e-05	0.0059	16.9	0.2	1	21	561	581	561	585	0.91
12	12	1.8e-05	0.0013	18.9	0.3	3	23	604	625	602	625	0.97

Sequence Information

Coding Sequence: ATGAGCGCCATAAAGGACGCCACCGAGGCGACTGCTCTCGGTTCCAGCAGCGATGGTGGAGGCACAGTGATCAAAGTCGTAGATATTGACAAACTTTCAACAGCCAAGGACAAACGCAGTGGGACACGCATGAAGCTGCTCAACGATGTGTccgcagcaaaagcaaaaacttcgCCTCGCGTTAAGCAGGAGAAACGCACAAGCATAAAAATACTCAACAACGATGAATCAGCGATCAGTCCAAAAGGCAGCAGTGAGAAGCGCTCCGCTGGCAAAACAACTGTAAGTCCTGCCGTCAAGATATTGAATGAGAAGCGTATTTCGGCCCCCTCTACGCCTGTGGAAACAGCCAAGATTAAGACATCGCctggcaaaaagaagaaaatggaTCACTATGTACTGCAGGCTATTAAGAGTGAAAACAGCAAATCGGAAAGCACGAAAATCAGGGTGGAAattgatgacgacgacgataCAATTGATTTTATACTCGCCGACGAAGATGCTGAATTGGGTGCGTCAAAGGAGAATGAAGATGAGTTTGTTGTGTCTGCCGTTGAGgaaggtgatgatgatgacgatgaagatgaagatgatgacGACGAGGGCACCCTTGACGGTGAAGGAAGTGGAAAGAACCGCGTTGGCGGCTCTAACAACGAACTCAAAGAAATGGTAGAGCATGTGTGCGGAAAGTGCTACAAGACATTCCGGCGCGTCAAGAGCCTTAAGAAACACTTGGAATTCTGTCGCTATGACAGTGGCTATCATCTGCGCAAGGCGGACATGCTAAAGAATCTggagaaaattgaaaaagatGCTGTGGTCATGGAGAAGAAGGACATATGTTTCTGCTGCAGCGAAAGCTACGACACCTTTCATCTGGGCCACATCAATTGCCCCGATTGCCCAAAGTCATTTAAGACACAGACCAGCTATGAGCGTCACATCTTCATAACTCACTCCGAGTTCAATGATTATCCCTGCTCCATATGCAATGCTAAATTACGCAGCGCCGCCTTACTAAAACTGCACGAACAGCAACATCAATTGCGAGGCAAGCCATTCGCCTGCAAGATCTGTGGCAAAGACTTTACGCGCTCATATCACTTAAAGCGCCACCAAAAGTATTCGTCGTGCTCGGCCAACGAGAATGATACCATGAGCTGCAAGGTATGCGATCGCGTCTTCTTTCGCCTAGACAATCTGCGCGCCCATCTCAAGCAGCATTTGGGCACCCAGGTGGTAAAGAAACCAGAATACATGTGTCATGTGTGCAAGAACTGCTTTTACAGCCTTTCAACGCTTAATATACATATACGTACCCACACTGGAGAGAAACCTTTCGATTGTGATCTGTGCGACAAGAAATTTTCGGCCTTGGTGGCGCTCAAGAAGCATCGGCGTTACCACACCGGCGAGAAACCGTATACCTGCACAGTGTGCAGTCAATCTTTTGCTGTTAAGGAGGTGCTTAATCGTCATATGAAACGTCATACGGGCGAACGCCCACACAAATGCAACGAGTGTGGCAAGAGCTTTATTCAGGCCACACAGCTGCGTACGCATTCCAAAACGCATTTGCGTCCCTACGCCTGCACCAAATGTCCTGAAAAGTTCAAGACAGAGAAACAACTCGAGCGCCACGGTAAGGAACATTCGCGAATCAAACGGCGCTCATTCGCCTGTACGGAATGCTCACGTAGTTTCCGCACCAGTGCGTTGCTAAAGGATCATGTTAATGCTGGCGATCATTCACCCAAATCGGCACGGGCCAAGCGTACGGCTAAGGTTATTGAGCGTACAGATTGCGCAATTTGTGACAAGAACTTCGATAGCACTGAAACGCTTAGGAACCACATACGTACCGTGCACGAGTGCGATCCTGATGATATATTTGGCACAGAGCCACCACCTGCAAAACGCAGGGCTAAGAAGGCAGTGCAAGTGTTGGAGACAATCGAAGGGGAGGACGAGGAAGATGAGGAGGAGGAGCCAGACGAGACGGCTGCCAACACGTCGGCGGGCTCCCTGATCTCCAGCAAAACGGATGGCAATGGTGTTGTGGTGCGCGAGTTTCTGGTGGACGAAGGCGACGGCAGCACACAGACAATTATGCTCGAAAATGAAGTGTACACCATTTTGTCATTGGAGGGTGCCGATGCAACTGAAGCGTCAGCCGAAGGTGGCGTCAAGGCAGAGTCCAAGGATAAGCCAAAGCAGGCCGTGTCACCAGTTGTCAAGAAGGAGCAACGCAAATCACTGGCCGCAAGTTTGGCAGCTGCCATTGCCGATAATCAGGATGACCCGTTGAGCGATGATGATTTCAGTGGCGAGGTGCTCACTGAAGATGACCTTAAGTTGAAGGAGAACATAGCCAAGCTCATTGACATGCTGGTGGATCCAGAGACACTTAAGAAATACGGCTGGCCCAACAGCCCTGAGGAGTCGGTTCTATGCAAGGTGATCGAGAACTGTGGCCACGATCTGAACAAGAATGGCGAAAACTATTCCGAGTTGGATTATGGTAGTCGTATGCGCGAATATTGTAAGCTTCTGTTCACCGTGGTCATTCACAATGATTCCATCAAGTCACTACTGAACAATTTCCCCATTGACGATGTCATTGAGTACGTTTTGGGTGATGAGGATCAGGACCAAGACCAAGATATGGAGAAGGAGAAAGAAAAGGACAAAGACAAGACAACAGAGATATCAGAGACAGACACTGTGACGCCAAAACCCGTTGAAGCCGAggcttaa
Protein Sequence: MSAIKDATEATALGSSSDGGGTVIKVVDIDKLSTAKDKRSGTRMKLLNDVSAAKAKTSPRVKQEKRTSIKILNNDESAISPKGSSEKRSAGKTTVSPAVKILNEKRISAPSTPVETAKIKTSPGKKKKMDHYVLQAIKSENSKSESTKIRVEIDDDDDTIDFILADEDAELGASKENEDEFVVSAVEEGDDDDDEDEDDDDEGTLDGEGSGKNRVGGSNNELKEMVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDYPCSICNAKLRSAALLKLHEQQHQLRGKPFACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFFRLDNLRAHLKQHLGTQVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYTCTVCSQSFAVKEVLNRHMKRHTGERPHKCNECGKSFIQATQLRTHSKTHLRPYACTKCPEKFKTEKQLERHGKEHSRIKRRSFACTECSRSFRTSALLKDHVNAGDHSPKSARAKRTAKVIERTDCAICDKNFDSTETLRNHIRTVHECDPDDIFGTEPPPAKRRAKKAVQVLETIEGEDEEDEEEEPDETAANTSAGSLISSKTDGNGVVVREFLVDEGDGSTQTIMLENEVYTILSLEGADATEASAEGGVKAESKDKPKQAVSPVVKKEQRKSLAASLAAAIADNQDDPLSDDDFSGEVLTEDDLKLKENIAKLIDMLVDPETLKKYGWPNSPEESVLCKVIENCGHDLNKNGENYSELDYGSRMREYCKLLFTVVIHNDSIKSLLNNFPIDDVIEYVLGDEDQDQDQDMEKEKEKDKDKTTEISETDTVTPKPVEAEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01325058;
90% Identity: iTF_01328022;
80% Identity: -