Scyr009155.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Scaptomyza cyrtandrae
Gene Symbol
su(Hw)
Assembly
GCA_035044605.1
Location
JAWNNS010000640.1:8632785-8635852[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00063 0.046 14.3 2.2 1 20 233 252 233 254 0.94
2 12 2.6e-06 0.00019 21.7 0.4 3 23 305 326 303 326 0.93
3 12 0.063 4.6 8.0 0.1 1 23 332 354 332 354 0.96
4 12 7.1e-07 5.2e-05 23.5 2.5 1 21 361 381 361 382 0.95
5 12 7e-06 0.00052 20.4 0.8 2 23 394 415 393 415 0.96
6 12 9.8e-05 0.0073 16.8 5.3 1 23 426 448 426 448 0.99
7 12 7.6e-05 0.0056 17.1 0.9 1 23 454 476 454 476 0.97
8 12 1.5e-05 0.0011 19.3 0.8 1 23 482 504 482 504 0.99
9 12 1.4e-06 0.0001 22.6 3.0 1 23 510 532 510 532 0.98
10 12 2.3e-05 0.0017 18.8 0.7 1 23 536 558 536 558 0.97
11 12 0.00014 0.01 16.3 0.1 1 20 566 585 566 590 0.93
12 12 4.7e-05 0.0035 17.8 0.3 3 23 609 630 607 630 0.96

Sequence Information

Coding Sequence
ATGAGCGCTAAAAAGGAAACCACGGACGCGACCACTCTCGGATCCAGCAGAAATGGCGGAGGCACAGTGATCAAAGTCGTAGAGATAGAAAAACTTTCTAAGGCCAAGGACAAGCGCACTGGCACACGCATGAAGCTCCTCAACGATTTAACTGCTGCTGTAACTCCTTCTAAAGGCAAAACTTCGCCTCGCGTCAAGCAGGAGAAACGCTCTAGTATCAAAATCCTTAACAACGATGAATCAGCGATCAGTCCGAAAGGCAGCAATGAGCGGCGCTCCgctggcaaaacaacaactgtaagTCCTGCCGTCAAGATATTAAATGAGAAGCGTATTTCGGCTCCGTCTACGCCTGTGGAGACAGCCAAGATAAAGACATCGCCtagcaaaaagaagaaaatggaTCACTATGTGCTACAGGCAATCAAGAGCGAAAATAGCAAATCGGAAAGAACCACGAACATCACGGTGGAAATCGATGACGAGGACGATACCATTGACTTTATACTCGCCGATGATGACGCTGAATTGGGTGCGGCAAAACAGAACGACGATGAGTTTGTTGTGTCTGCCGTGGAGGAGGATGATGACgaagatgatgacgacgacgacgatgatgaggGCACAGGTGACGGTGAGGGGAGTggaaaaaaccgaaaaacagGCAATAACAACGAACTCAAGGAAATGGTAGAGCATGTATGCGGCAAATGCTACAAGACATTCCGGCGCGTCAAGagcttaaaaaaacatttggaaTTCTGTCGCTATGACAGTGGTTATCATCTACGCAAAGCAGACATGCTGAAGAATCTGGAGAAGATAGAAAAAGATGCGGTGGTCATGGAGAAGAAGGACATATGTTTCTGCTGCAGCGAAAGCTACGACACCTTTCATCTGGGTCACATTAATTGTCCCGATTGCCCTAAGTCATTTAAGACCCAGACAAGCTACGAGCGTCACATCTTCATAACGCACTCGGAGTTCAATGATTATCCCTGCTCCATTTGCAATGCCAAATTGCGCAGCGATGCTTTACTAAAACTGCACGAACAGCAGCATCAATTGCGTGGTAAGCCCTTTGCCTGCAAGATCTGTGGCAAAGATTTTACGCGCTCGTACCACTTGAAGCGCCACCAGAAGTATTCGTCGTGCTCGGCCAACGAGAATGATACCATGAGCTGCAAGGTGTGCGATCGCGTCTTCTTTCGCCTGGACAATCTACGCGCACATCTCAAGCAGCATTTGGGCACTCAGGTGGTAAAAAAGCCCGAATACATGTGTCATGTGTGCAAAAATTGCTTCTACAGCTTATCAACGCTTAACATACATATACGCACCCACACTGGCGAGAAGCCTTTCGATTGTGATCTGTGCGATAAGAAGTTTTCGGCCTTGGTGGCGCTCAAGAAGCATCGTCGTTATCACACCGGCGAGAAACCCTACACCTGTACAGTGTGCAGTCAATCTTTTGCTGTTAAGGAGGTGCTTAATCGCCATATGAAACGGCATACGGGCGAACGTCCACACAAATGCAACGAGTGCGGCAAGAGTTTCATTCAGGCCACACAGTTGCGTACGCATTCCAAGACGCATTTGCGACCATACGTCTGCAACAATTGCCCTGAAAAGTTCAAGACAGAGAAACAACTCGAGCGCCACGGTAAGGAACATTCACGCCAAAAACGACGCTCTTTTCCCTGTACGGAATGCTCACGGAGCTTCCGCTCCAGTGCGTTGCTTAAGGAGCATGTTGATGCTGGCGATCATTCGCCTAAACCTACACGTGCTAAGCGTACGGCAAAGGCTATTGAGCGTACAGATTGCGCAATCTGCGACAAGAACTTCGATAGCACTGAAACGCTCAGGAACCACATACGGTCCGTGCACGAGTGTGATCCAGATGATATTTTTGGTACAGAGCCACCACCCGCAAAACGCAGGGCTAGGAAGACCGTGCAGGTGTTGGAGCCAATCGAAGGAGAAGACGAGGAAGAGGAAAACGAGACGGCTGCCAACACATCCGCTGGATCACTCATATCCAGTAAAACGGATGGCAATGGTGTTGTGGTGCGCGAGTTTCTGGTGGATGAAGGCGATGGCAGCACACAGACAATTCTGCTCGAAAATGAAGTGTACACGATTTTGCCATTGGAGGGTGCTAGTGCAACAGATGCGTCAGTCGAAGGTGACGTCAAGGCAGAGTCTAAGGATAATCAAAAGCAGTCCGTATCACCCGTTGTCAAGAAAGAGCAGCGCAAATCACTGGCCGCAAGCTTGGCAGCTGCCATTGCGGATAATCAGGATGAGCCGTTGAGCGATGACGATTTCAGTGGCGAAGTGCTCACCGAAGATGATCTTAAGTTGAAGGAAAACATAGCCAAGTTAATTGACATGCTGGTGGATCCAGACACACTTAAGAAATATGGCTGGCCCAACAGCCCCGAGGAGTCGGTCCTTTGCAAGGTCATTGAAAATTGTGGTTATGATCTAAACAAGGGTGGCGAGAACTATTCCGAATTGGATTATGGCAGTCGTATGCGCGAGTATTGCAAACTTCTTTTTACGGTGGTAATTCACAATGATTCCATCAAGTCACTACTGAACAATTTCCCCGTTGACGATGTCATTGAATATGTGTTGGGTGATGAGGATCAAGACCAAGACATGgaaaaagacaaagacaagGAGGCAGAGAAATCAGAGACGGACACTGTAACACCCGATGCCGTTGAAGCTGAGGTTTAA
Protein Sequence
MSAKKETTDATTLGSSRNGGGTVIKVVEIEKLSKAKDKRTGTRMKLLNDLTAAVTPSKGKTSPRVKQEKRSSIKILNNDESAISPKGSNERRSAGKTTTVSPAVKILNEKRISAPSTPVETAKIKTSPSKKKKMDHYVLQAIKSENSKSERTTNITVEIDDEDDTIDFILADDDAELGAAKQNDDEFVVSAVEEDDDEDDDDDDDDEGTGDGEGSGKNRKTGNNNELKEMVEHVCGKCYKTFRRVKSLKKHLEFCRYDSGYHLRKADMLKNLEKIEKDAVVMEKKDICFCCSESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFNDYPCSICNAKLRSDALLKLHEQQHQLRGKPFACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFFRLDNLRAHLKQHLGTQVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYTCTVCSQSFAVKEVLNRHMKRHTGERPHKCNECGKSFIQATQLRTHSKTHLRPYVCNNCPEKFKTEKQLERHGKEHSRQKRRSFPCTECSRSFRSSALLKEHVDAGDHSPKPTRAKRTAKAIERTDCAICDKNFDSTETLRNHIRSVHECDPDDIFGTEPPPAKRRARKTVQVLEPIEGEDEEEENETAANTSAGSLISSKTDGNGVVVREFLVDEGDGSTQTILLENEVYTILPLEGASATDASVEGDVKAESKDNQKQSVSPVVKKEQRKSLAASLAAAIADNQDEPLSDDDFSGEVLTEDDLKLKENIAKLIDMLVDPDTLKKYGWPNSPEESVLCKVIENCGYDLNKGGENYSELDYGSRMREYCKLLFTVVIHNDSIKSLLNNFPVDDVIEYVLGDEDQDQDMEKDKDKEAEKSETDTVTPDAVEAEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01325058;
90% Identity
iTF_01328022;
80% Identity
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