Sgra014757.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- -
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000002.1:18614864-18626152[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.6 1e+02 3.5 1.4 3 22 467 486 465 489 0.90 2 14 0.32 21 5.6 0.5 2 23 511 533 510 533 0.93 3 14 0.048 3.1 8.2 0.7 1 23 550 573 550 573 0.95 4 14 0.15 9.6 6.7 0.2 1 21 578 598 578 602 0.91 5 14 0.013 0.85 10.0 0.2 2 23 659 681 658 681 0.95 6 14 0.44 28 5.2 0.1 1 21 686 706 686 707 0.92 7 14 0.0057 0.37 11.1 2.1 2 23 765 785 764 785 0.96 8 14 4.2e-05 0.0027 17.8 1.5 1 23 791 814 791 814 0.97 9 14 0.00026 0.017 15.4 0.4 1 23 840 862 840 862 0.98 10 14 0.69 45 4.6 0.1 1 23 870 894 870 894 0.95 11 14 0.21 14 6.2 6.9 1 23 899 923 899 923 0.97 12 14 0.0041 0.27 11.6 2.6 1 23 934 956 934 956 0.97 13 14 0.0011 0.073 13.3 3.4 1 20 962 981 962 983 0.95 14 14 4 2.6e+02 2.2 3.5 1 23 993 1016 993 1016 0.94
Sequence Information
- Coding Sequence
- ATGAATCAATCTGCAACCGATGATTTGGATGATGCACATTTGTGCATCAAATGCCAGGCGACAATTCAGGGTCTCACCAAGTACATCGAGCATCGAAAACAAAATTGCCGCAACGAGCAGCCAACGAAACAAGTGGCGACACCTCCGCCAGCAACAACAGCAACGTCGAACCCCAGCGAACAAGTGTCGCCACCAATTATGAGTCGATCGAACTTGGATCACAGCTATGATAGCTTTCATTTCGCAGAGCCCGAAGTACCGAGCAGCTATCTGCGCAAGACAGCCGCCAGTCATGGCGGAAAGACCTCAAAGTCCCTAACGGAATCGTATGATCCCACCTATGAGCTGGGCGCTGATCTGTTCTTCTCGTCGCTGCAACTGCAAAGCGTTTCGACGGGCGGCAAAACCGGTGCACGTTCCGACCGATCCACCAAGTTGGAGCAAAGCTGGCATACGTCCAGCGACTGTTCCGATCCGCTGCTGAAGGCAGTGCGGGAACACGAGGTAACCCACTTTAAGCCACTCAAATTCGAACACTCGCCGGAGACGAGCGACGACGATGAACATGATGACTTTGAGGGCGACGAGGATGATCATGAGCATGAACATGAACACGATAATGATGGCGATGCGGATCATGATGAGGATTATGATGCAAGACGTCATTCGCCACCAACGGTGCCTGCCACGCACACGGGTGGCAAGTGGAAGCCCGAGCATCGTCCACAGTTGCAGCACTCGCATCTGGAACGCATCTCGCCCAGCTGGGATGAGCCAGCCGAGGAGCCGCACGACCATCCGCCGGCGGAACACACGCACGGCAAATGGGTGCCGGGCAGCAAGCAACTGGAGTACCGCGAAAACATTGATCTGACCAAGCTGCAGCAACCGGATGCCAGCTTCTGGTGCAACATCTGCTGTCGTCGCCTCATATCGCGCCTCATCTACAAGCAACATCTGCGCAGCGCCTATCACCAGCGACGCGCCGATGCCGAACGTCAACTGGAGCAGGCCAATCTTGAGAGCGCCAATCTCACACTGGTGACACCAACGGTGCCACCAGACCCATCCCCATCCCCATCGCCGCCACATCGTCGTCGACGTCGTGCCAATCTGCTGCGCTGCGAACTGTGCCGGCATAGCATGGCTCGGCATCTGATAGGCAAGCATCTGATATCCCACTATCACTATCGACGCCTGCAACAGCAGCCGCAGACCCAGCTGCGACGACAAAACGCTCTCCACGACATCCTCGAGCACATGGGCAGCATTGTTAGACAGGCGCCGTTTCAGTGTCTTCCCTGTCGCTTTTATGCCAATACGGAAGAAACTTTTCAGGCTCATTGGCGCTCCTCGACGCATGTGAAGCTAACGGAACATTTGGGAGGCGACTTCTGGTGCAGCTTTTGCCAATTCGAGTGTACGAGCAATGAACAGATGTGGGAACATCTCTTAAGCGACTCACACAAAGAGGTGCTCCTTGCCATCAATCGATCCGTGCCCGTTTGCATTGCCCAACGTCGTCCGTTGAACTGTTCCAGCTGCAGCGCCAGTTTCCTGTACAATGCACAGCTGAGGCGCCACTTTGCCACGGAGCATGTGGGTTTGGTGGCAACTGGCAGTGCTGCCGACGACTATCAGTGTCGCTTTCGTTGCGGCATTTGTGGCGTGGCACAGAGATCTCGCGTTGCGTTGCAGCGGCACGAGAAGCACAAGCATCGTGTGGCCAAATACTATTGTGCCGTTTGCCGGCTGGAGTTTGAGACGCCGCAAGAGGCGCGTCGCCATCGCAGCCTGATGCAACACAAGCGGCGTGCCAAACGTCAGCTAAAACGAAAGTGCAACAGCATCACTGATCAGCCGGAGCGTGAGATTCAGCACATGCTGCACGAGGTGCTAGAGGAGCTGCAGGTGGTACTAGAAGCAACACCACCAACGGCCGTGAGGGCCAAGCGGCGTCGCCTCGTCAATAGCCAATGCGGCAGCTGTTCTCTGAGCTTTGAGACGCCCCAAGCGCTGGTCGAGCATCGTCGGGAAACCCATCCGGCGGACAATCATGCTTGCCTTAGTTGTGGCGGCAGCTTCCAGTCTGCCCAGGCACTGGGACGACATACACGCAGCTGCCAGCCTAAAGCTTCCACCTCAACAGCTGCTGCTGCTGCTAATCCTGCTTCAGATCCTGCCACCTGGAACTGTGAAAAGTGCAGCTTTCAATCGCAATATGAATCGGATTTGCTGTATCATCGTTTCTTTCATTCGCATGGCTCGGCAATTGGCAAGAACGAGCTGCTCCAGTGTCCACTGTGTCCCAAACAATTTCGCAAGCACTCGCTGCGTCCCCACCTGCGCAATCACACGGACGAAAGGATCTTCGAGTGTGCCGAGTGCTCGGCCAAGTTTGCCCGAAGACACAATCTTAAAAATCACATCACCACAATGCATGAGAAAAAGGAGAAAGAGAAAATCTCTGGAGATGCCGAGGCAGATCCGGCTAAGACAACAAAACCGAAGCAAAAGTATCAATGTGGCACGTGTGGCAAGATATTGGCTAAAAAATATTCTCTGAAGCTGCACGAGATGAGCCATGCCAAGGAGGTGGAGCGTCGATATCGCTGCAGCTTTGAGGATTGCCAATATGCTGGGCTAACCCCGGAAGCCCTCAAGATCCATCAAATCTCGCATGCCAAAGAGAATCACAAATGCGAACACGAGAACTGTCAATATGTGGGCAAAAGTAAGCTGCATTTGAAAAGACACCTCAAGTCGCATTTGACCCAAAAGGAGCTGGATTGCAAATGGTTCTTTTGCGATCAGTGCGATTTCAAAGCCCGGATCAGGGCACATCTGAAGCGGCACATGCGTTGGCACACGGGCGAGAAGCCACATCAGTGTCCCCACTGTGACTTCCAATGCAGCAGCATGGATAATCTTCGGAAACATATTGTCAAAACGGGCAAGCATCCGGGCAAGTTCATCTACGAGTGTTCCAACTGTGACACCTTCAAGAGCAACAGCCACAAGGAATACCAGCAGCATTTGCTCACCCATAAGATCGAAGTACCGTGA
- Protein Sequence
- MNQSATDDLDDAHLCIKCQATIQGLTKYIEHRKQNCRNEQPTKQVATPPPATTATSNPSEQVSPPIMSRSNLDHSYDSFHFAEPEVPSSYLRKTAASHGGKTSKSLTESYDPTYELGADLFFSSLQLQSVSTGGKTGARSDRSTKLEQSWHTSSDCSDPLLKAVREHEVTHFKPLKFEHSPETSDDDEHDDFEGDEDDHEHEHEHDNDGDADHDEDYDARRHSPPTVPATHTGGKWKPEHRPQLQHSHLERISPSWDEPAEEPHDHPPAEHTHGKWVPGSKQLEYRENIDLTKLQQPDASFWCNICCRRLISRLIYKQHLRSAYHQRRADAERQLEQANLESANLTLVTPTVPPDPSPSPSPPHRRRRRANLLRCELCRHSMARHLIGKHLISHYHYRRLQQQPQTQLRRQNALHDILEHMGSIVRQAPFQCLPCRFYANTEETFQAHWRSSTHVKLTEHLGGDFWCSFCQFECTSNEQMWEHLLSDSHKEVLLAINRSVPVCIAQRRPLNCSSCSASFLYNAQLRRHFATEHVGLVATGSAADDYQCRFRCGICGVAQRSRVALQRHEKHKHRVAKYYCAVCRLEFETPQEARRHRSLMQHKRRAKRQLKRKCNSITDQPEREIQHMLHEVLEELQVVLEATPPTAVRAKRRRLVNSQCGSCSLSFETPQALVEHRRETHPADNHACLSCGGSFQSAQALGRHTRSCQPKASTSTAAAAANPASDPATWNCEKCSFQSQYESDLLYHRFFHSHGSAIGKNELLQCPLCPKQFRKHSLRPHLRNHTDERIFECAECSAKFARRHNLKNHITTMHEKKEKEKISGDAEADPAKTTKPKQKYQCGTCGKILAKKYSLKLHEMSHAKEVERRYRCSFEDCQYAGLTPEALKIHQISHAKENHKCEHENCQYVGKSKLHLKRHLKSHLTQKELDCKWFFCDQCDFKARIRAHLKRHMRWHTGEKPHQCPHCDFQCSSMDNLRKHIVKTGKHPGKFIYECSNCDTFKSNSHKEYQQHLLTHKIEVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01325990; iTF_01322263; iTF_01327518; iTF_01328225; iTF_01321527; iTF_01320795; iTF_01324511;
- 90% Identity
- -
- 80% Identity
- -