Basic Information

Insect: Scaptomyza flava
Gene Symbol: -
Assembly: GCA_003952975.1
Location: RKRM01000050.1:111759-124657[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.8 2.9e+02 2.1 2.4 3 23 304 326 302 326 0.92

2 15 2.9 2.2e+02 2.5 0.8 3 21 466 484 465 488 0.92

3 15 0.29 22 5.6 0.5 2 23 510 532 509 532 0.93

4 15 0.044 3.4 8.2 0.7 1 23 549 572 549 572 0.95

5 15 0.3 23 5.6 0.3 1 21 577 597 577 601 0.90

6 15 0.015 1.1 9.7 0.2 2 23 661 683 661 683 0.95

7 15 0.4 31 5.2 0.1 1 21 688 708 688 709 0.92

8 15 0.052 3.9 8.0 2.2 2 23 772 792 771 792 0.96

9 15 3.4e-06 0.00026 21.2 2.1 1 23 798 821 798 821 0.97

10 15 0.0039 0.29 11.5 0.4 1 19 841 859 841 863 0.91

11 15 0.63 48 4.6 0.1 1 23 870 894 870 894 0.96

12 15 4.6 3.5e+02 1.9 7.2 1 23 899 923 899 923 0.96

13 15 0.0012 0.089 13.2 4.1 1 23 936 958 936 958 0.98

14 15 0.00045 0.034 14.5 3.8 1 22 964 985 964 989 0.93

15 15 3.7 2.8e+02 2.2 1.7 1 23 995 1018 995 1018 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.8	2.9e+02	2.1	2.4	3	23	304	326	302	326	0.92
2	15	2.9	2.2e+02	2.5	0.8	3	21	466	484	465	488	0.92
3	15	0.29	22	5.6	0.5	2	23	510	532	509	532	0.93
4	15	0.044	3.4	8.2	0.7	1	23	549	572	549	572	0.95
5	15	0.3	23	5.6	0.3	1	21	577	597	577	601	0.90
6	15	0.015	1.1	9.7	0.2	2	23	661	683	661	683	0.95
7	15	0.4	31	5.2	0.1	1	21	688	708	688	709	0.92
8	15	0.052	3.9	8.0	2.2	2	23	772	792	771	792	0.96
9	15	3.4e-06	0.00026	21.2	2.1	1	23	798	821	798	821	0.97
10	15	0.0039	0.29	11.5	0.4	1	19	841	859	841	863	0.91
11	15	0.63	48	4.6	0.1	1	23	870	894	870	894	0.96
12	15	4.6	3.5e+02	1.9	7.2	1	23	899	923	899	923	0.96
13	15	0.0012	0.089	13.2	4.1	1	23	936	958	936	958	0.98
14	15	0.00045	0.034	14.5	3.8	1	22	964	985	964	989	0.93
15	15	3.7	2.8e+02	2.2	1.7	1	23	995	1018	995	1018	0.90

Sequence Information

Coding Sequence: ATGAATACATCCGCATCCGAAGATTTGGAGGATGCACATTTGTGCATCAAATGCAATGCGACAATTGAGGGTCTCACCAAGTACATTGAGCATCGTAAACGAAATTGCCGCAATGAGCACCCAACGAAACAAGTGGCGACCattccagcaacaacagcaacatcgtCACCCAGCGCACAAGGATCGCCACCAATTATGAGTCGTACCAACTTGGATCACAGCTATGATGGCTTTCATTTCGCAGAACCAGAGGCACCGAGCAGTTATCTGCGCAAGGCAGCCGCCAGTCATGGCGGAAAGTCCTCAAAGTCCCTAACGGAATCGTATGATCCCACCTATGAGCTGGGAGCTGATCTGTTCTTCTCATCGCTGCAACTGCAAAGCGTATCAACGGGCGGAAAAACCGGTGCACGTCCCGAACGCAACGGCAAGTTGGAACAGAGCTGGCATACGTCAAGCAACTGTTCCGATCCGCTGTTGAAAGCTGTGCGGGAACATGAGGTATCCCACTTTAAGCCACTCGAGTTCGTACACTCGCCGGAGACAAGCGACGACGATGAACACGATGACTTTGAAGGCGATGAGGATGATCATGAGCATGAACATGAACACGAACATGATAATGATGCCGATCCGGATCATGATGAAGACTATGATGCAAGACGTCATTCTCCACCAACGGTGCCTGCCACGCACACGGGTGGCAAATGGAAGCCGGAGCATCGTCCACAGTTGCAGCATTCGCACCTGGAACGCATCTCCCCGAGCTGGGATGAGCTCACCGAGGAGCCGCATGATCATCCCCCTGCGGAGCACACGCACGGCAAATGGGTGCCGGGCAGCAAGCAACTAGAGTACCGCGAAAATATTGATCTGACCAAGCTGCAGCAACAAGGTGCCAGCTTCTGGTGCAACATCTGTTGTCGTCGCCTCAAATCGCGCCTCAACTACGAACAACATCTGCGCAGCGCCTATCATCAGCGACGTGCCGATGCGGAACGTCAATTGGAGCAGGCCAATCTAGAGAGCGCCAATCTCACACTGACCAACGACTTTTCACAGGTGGCACCAGATCCGCCCCTGCCACATCGTCGACTTCGTCGTACTAATCTTCTGCGCTGTGAACTGTGTCGTCATAGCATGGCTCGTCATCTGATAGGCAAGCATTTGATATCCCACTATCACTATCGAcgcctgcaacagcagcagcagacccAGTTGCGACGTCAAAACGCCCTGCACGACATCCTCGAGCACATGGGCAGCATTGTAAGACAGGCGCCGTTTCAATGTCTTCCTTGCCGCTTCTATGCCAATACGGAGGAAACTTTTCAGGCTCATTGGCGCTCCTCAACGCATGTGAAGCTAACGGAACATTTAGGAGGCGACTTCTGGTGTAGCTTTTGTCAGTTCGAGTGTGCGAGCAATGAGCAGATGTGGCAACATTTGTTGGGCGACTCGCACAAAGAGGTGCTCTTTGCCATCAATCGTTCCGTGCCCATTTGCATTGCCCAACGTCGTCCTTTGAACTGTTCCAGCTGCAGCGCTAGTTTCCTGTACAATGCACAACTAAGGCGTCACTTTGCCACGGAGCATGTGGGATTGGTGGCAACTGGCAGTGCTGCCGATGACTATCAGTGTCGCTTCCGTTGTGGCATTTGTGGCGTGGCACAGAGATCTCGGGTAGCGCTGCAGCGGCACGAAAAGCACAAGCATCGTTTggccaaatatttttgtgccgTTTGCCGCCTGGAGTTTGAGACGCCTCAAGAGGCGCGTCGCCATCGCAGCCTGATGCAACACAAGCGGCGTTCCAACCGTCAGCTAAAACGAAAGTGCAGCAGCCTTAATCAGCCGGAGCGTGAGATTCAACACATGCTGCACGAGGTGCTTGAGGAGCAACAGGCGGCACTAGACGCTGCCGCAGTGATATCAACACCAAAAGCCGGGAGTACCAAGAGGCGTCGACTGGTCAATAGACAATGTGGCAGCTGTTCTCTTAGCTTCGAAACGCCGCAAGCGCTAGTCGAGCATCGTCGGGAAACCCATCCCGCGGACAATCATGCTTGCCTTAGTTGTGGCGGAAGCTTTCAGTCTGCCCAGGCACTGGGAAGACACACACGCAGTTGCCAACCTAAAGCTTCTACctcaacagctgctgctgctgctgtagctgttgctgcgaGTCCTGCTTCAGATCCAGCCACCTGGAACTGTGAACAGTGCAGCTTTGCATCTCAATACGAATCGGATTTGCTCTATCATCGTTTCTTTCATACGCATGGCTCGGCGATTGGCAAGAATGAGCTGCTCCAGTGTCCACTCTGTGCCAAACAATTTCGCAAGCACTCGTTGCGTCCTCACCTGCGCAATCACACAGACGAAAGGATCTTTGAGTGTACCGAGTGCCCAGCCAAGTTTGTCAGAAGACACAACCTCAAAAACCACATGACCACAATGCATGGGAAAAAGGAGAAAATGTCTGTAGATGCAGATAAGATCAAAATACCCAGGCAAACATATCAATGTGGCACGTGTGGCAAAATATTAGCTAAAAAATATTCTCTTAAACTGCACGATATGAGCCATGCTGAGGTGGAGCGTCAATATCGTTGTAACTTTGAGGATTGTCAATATGCTGGTCTAACGCCGGAAGCACTCAAGATCCATCTGATCTCACATGCCAAAGAAAGTCACAAATGTAAACATGATAGCTGTCGATATGTGGGCAAAAGTGAGCTACATTTAAAAAGACACCTCAAGTCGCATGTGATCCAAAAGGAGCTGGATGATGGCGGCAAATGGTTCTCGTGCGATCAGTGTGAGTTCAGGACCCGCATCAGAGGACATCTGAGGCGGCACATGCGTCGCCACACGGGTGAGAAACCACATCAGTGTCCCCATTGCGACTTTCAATGCAGCAACATGGATAATCTACGCAAACATATTCTCAAAACGGGCATTCATCCGGGAAAGTTCATATACGAGTGTTCAACCTGTGACACGTTCAAGAGCAACAACTACAAGGAATATCAGCAACATTTGGTCACGCATAAGATCGAAATAACATAG
Protein Sequence: MNTSASEDLEDAHLCIKCNATIEGLTKYIEHRKRNCRNEHPTKQVATIPATTATSSPSAQGSPPIMSRTNLDHSYDGFHFAEPEAPSSYLRKAAASHGGKSSKSLTESYDPTYELGADLFFSSLQLQSVSTGGKTGARPERNGKLEQSWHTSSNCSDPLLKAVREHEVSHFKPLEFVHSPETSDDDEHDDFEGDEDDHEHEHEHEHDNDADPDHDEDYDARRHSPPTVPATHTGGKWKPEHRPQLQHSHLERISPSWDELTEEPHDHPPAEHTHGKWVPGSKQLEYRENIDLTKLQQQGASFWCNICCRRLKSRLNYEQHLRSAYHQRRADAERQLEQANLESANLTLTNDFSQVAPDPPLPHRRLRRTNLLRCELCRHSMARHLIGKHLISHYHYRRLQQQQQTQLRRQNALHDILEHMGSIVRQAPFQCLPCRFYANTEETFQAHWRSSTHVKLTEHLGGDFWCSFCQFECASNEQMWQHLLGDSHKEVLFAINRSVPICIAQRRPLNCSSCSASFLYNAQLRRHFATEHVGLVATGSAADDYQCRFRCGICGVAQRSRVALQRHEKHKHRLAKYFCAVCRLEFETPQEARRHRSLMQHKRRSNRQLKRKCSSLNQPEREIQHMLHEVLEEQQAALDAAAVISTPKAGSTKRRRLVNRQCGSCSLSFETPQALVEHRRETHPADNHACLSCGGSFQSAQALGRHTRSCQPKASTSTAAAAAVAVAASPASDPATWNCEQCSFASQYESDLLYHRFFHTHGSAIGKNELLQCPLCAKQFRKHSLRPHLRNHTDERIFECTECPAKFVRRHNLKNHMTTMHGKKEKMSVDADKIKIPRQTYQCGTCGKILAKKYSLKLHDMSHAEVERQYRCNFEDCQYAGLTPEALKIHLISHAKESHKCKHDSCRYVGKSELHLKRHLKSHVIQKELDDGGKWFSCDQCEFRTRIRGHLRRHMRRHTGEKPHQCPHCDFQCSNMDNLRKHILKTGIHPGKFIYECSTCDTFKSNNYKEYQQHLVTHKIEIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01322986;
90% Identity: iTF_01324511;
80% Identity: -