Sred008200.1
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- -
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010000803.1:449289-462495[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.81 56 4.4 0.5 3 21 466 484 464 488 0.92 2 13 0.016 1.1 9.8 0.3 2 23 510 532 509 532 0.95 3 13 0.029 2 9.0 1.1 1 23 549 572 549 572 0.95 4 13 0.11 7.5 7.2 0.2 1 21 577 597 577 601 0.91 5 13 0.018 1.3 9.6 0.2 2 23 664 686 664 686 0.95 6 13 2.6 1.8e+02 2.8 1.7 2 23 736 757 735 757 0.91 7 13 0.2 14 6.4 2.1 2 23 770 790 769 790 0.91 8 13 2e-05 0.0014 18.9 1.4 1 23 796 819 796 819 0.97 9 13 0.00043 0.03 14.7 0.4 1 23 847 869 847 869 0.98 10 13 0.46 32 5.2 0.1 1 23 876 900 876 900 0.97 11 13 3.6 2.5e+02 2.4 8.0 1 23 905 929 905 929 0.96 12 13 0.014 0.95 10.0 6.1 1 23 942 964 942 964 0.98 13 13 0.016 1.1 9.8 3.0 1 20 970 989 970 991 0.95
Sequence Information
- Coding Sequence
- ATGAATACCGAATCTGAGGACCTGGACGATGCACATTTGTGCATCAAATGCAATGCGACAATTGTGGGTCTCACCAAGTATATTGAGCATCGTAAACGAAATTGTCTTAGCACCTCCCACAATGAGCACCCAACGAAGCAAGTGGTGgtcacaacgacaacaacatcgacacCCACCGAACAAGTATCGCCACCAATTATGAGTCGTACCAACTTGGATCACAGCTATGATGGCTTTAACTTTGCAGAGCCAGAGGAACCGAGTACTTATCTGCGCAAGACAACCGCCAGTCATGGAGGAAAGACTTCAAAGTCTTTAACGGAATCGTATGATCCCACCTACGAACTGGGCGCTGATCTGTTCTTCTCGTCGCTGCAACTGCAAAGCGTATCAACGGGCGGCAAGACAGGTTCACGCTCTGAACGGTCTGCGAAAGAGGAACAGAACTGGCATACGTCTAGCAACTGCTCCGACCCGCTGCTGAAAGCGGTACGGGAACATGAGGTTTCCCATTTTAAGCAACTGAAATTCGTAAATTCGCCGGAGACAAGCGACGACGATGAACCTGATGACTTTGatggcgatgatgatgatcatgagcATGAACACGAACACGAACATGACGCCGAGCCGGATCACGATTTGGATTACGATGCCCGTCGTCATTCGCCACCAACGGtgcctgccacacacacgGGTGGCAAATGGAAACCGGAGCATCGTCCTCAGTTGCAGCATACACATCTGGAACGCATCTCGCCCAGCTGGGATGAGCCTCCCGAGGAGCCGCTTGATCATCCACCCGAGGAACACACGCACGGCAAATGGGTGCCGGGCAGCAAACAACTGGAGTACCGTGAGAACATTGATCTGACCAAGCTGCAGCAGCCCGGCGCCAGCTATTGGTGCAACATTTGTTGTCGTCGCCTCAAATCACGCCTCAACTACGACCAACATCTGCGCAGCGCCTATCATCAGCGACGTGCTGATGCCGAGCGTCAACTGGAGCAGGCTAATCTCGAAAGCGCCAATCTTACACTTACCAAGGACTTTTCCAAGGAGACACCATCGGCACCAGAGCCACTTCCACATCGTCGCCGACGTCGTGCTCATCTTTTGCGCTGTGAACTCTGCCGCCATAGCATGGCTCGCCATCTGATAGGCAAGCATTTGATATCCCACTATCATTACCGAcgcctgcagcagcaacagaccCAATTGCAACGTCAGAACACCCTGCACGACATTCTGGGGCACATGGACAGCATTGTGAGACAGGCGCCATTTCAATGTCTTCCCTGTCGCTTCTATGCCAATACGGAGGAAACTTTTCAGGCTCATTGGCGCTCATCAACTCATATAGAACTAACCGATCATTTGGGAGGCGACTTCTGGTGTAGCTATTGCCAGTTTGAGTGTGCGAGCAATGAGGAAATGTGGCAACATTTGCTGGGTCCCTCGCACAAGGAGGTGCTTTTTGCCATCAATCGATCGGTGCCCGTTTGCATTGCCCAACGTCGTCCACTCAACTGTTCCATGTGCAGCGCTAGTTTTCTATACAATGCTCAGTTGAGACGACACTTGGCCACGGAGCATGTGGGAGTGGTGGCAACCGGCAGTGCTGCCGATGACTATCAGTGTCGCTTTCGTTGTAACATTTGTGGTGTCCCACAGAGATCTCGAGTGGCGCTGCAGCGGCACGAGAAGCACAAGCATCGTTTGGCCAAATACTATTGTGCCGTTTGCCGTTTGGAGTTTGTGACGCCGCAAGAGGCGCGTCGCCATCGCAGCCTGATGCAACATAAGCGGCGAACTAACCGTCACCTAAAACGAatctgcaacaacagcagcggcaataATCAACCGGAGCGGGAGATTGAACACATGCTGCACGAGGTGTTGGAGGAGCTGCAGTCAGCAGTTGTAGACGCAGACGACGTGGTGTCACCGCCAACCGTGAGGTCCAAGAGACGTCGGTTGGTCAACAACGAATGTGCCAGATGTTCGCTTAGCTTTGAGACACCTCAGGCACTTGTCGAGCACCGTCGACAATCGCATCCAATGGACAATCATGCTTGTCTCAGCTGCGGTGGCAGCTTTCAGTCTGGCCAGGCGCTGGGACGGCATTCACGGATTTGTCAACCCAAAGCTTCCacctcagcagcagctgctgttgctaatATTGCTTCTAATTCTGCTGCATGGAAGTGCGATAAGTGCAGCTTCACATCCCAATACGAATCTGACCTGCTCTATCATCGTTTCTTTCACTCGCATGGCTCGGCAATTGGCAAGAATGAGCTGCTCCAGTGTCCACTGTGTCTTAAACAGTTTCGGAAGCACTCGTTGCTACCTCATCTGCGCAATCACACAGATGAAAGGATATTCGAGTGTACCGAGTGCGTGGCCAAGTTCGCCAGAAGACATAACCTCAAAAATCACATGGCCACAATGCACGGGAAAAAGAAGAATACGTCAACagaaaaaagaagtaaaaataaGACAGCTCAACAGTCAGCAGATAGTCCCAAGCCAAAATACCAATGTGGCACATGTGGCAAAATATTAGCAAAAAAATATTCGCTTAAATTGCATGAGCTGAGCCATGCCAAGGTGGAGCGTCAATATCGTTGCCACTTGGACGACTGTCAATATGCGGGTCTTACGCCGGAAGCACTCAAAATCCATCTAATCTCACATGCGAGTGGAAATCACAAATGTGAACATGAAAGCTGTCATTATGTGGGCAAAAGTGAGCTGCATTTAAAGAGACACCTTAAGTCACATGCGACCCAAGAGGAGCTGGATAAGGGCGGCAAATGGTTTTCGTGCGATCAATGTGAGTTCCGGACACGCATTAGGGGACATCTCAAGCGACACATGCGTCATCACACCGGAGAGAAACCACATCAATGTCCCCATTGTGCATTCCAGTGCAGCAGCATGGATAATCTGCGCAAGCACATTGTCAAGACGCGCAAACATCCGGGGAAGTTCATCTACGAATGTTCATCCTGTGAGGAATTCAGGAGCAACAGCTATAAGGAATACCAACAACATTTGGccatacataaaaataaagtaacttAA
- Protein Sequence
- MNTESEDLDDAHLCIKCNATIVGLTKYIEHRKRNCLSTSHNEHPTKQVVVTTTTTSTPTEQVSPPIMSRTNLDHSYDGFNFAEPEEPSTYLRKTTASHGGKTSKSLTESYDPTYELGADLFFSSLQLQSVSTGGKTGSRSERSAKEEQNWHTSSNCSDPLLKAVREHEVSHFKQLKFVNSPETSDDDEPDDFDGDDDDHEHEHEHEHDAEPDHDLDYDARRHSPPTVPATHTGGKWKPEHRPQLQHTHLERISPSWDEPPEEPLDHPPEEHTHGKWVPGSKQLEYRENIDLTKLQQPGASYWCNICCRRLKSRLNYDQHLRSAYHQRRADAERQLEQANLESANLTLTKDFSKETPSAPEPLPHRRRRRAHLLRCELCRHSMARHLIGKHLISHYHYRRLQQQQTQLQRQNTLHDILGHMDSIVRQAPFQCLPCRFYANTEETFQAHWRSSTHIELTDHLGGDFWCSYCQFECASNEEMWQHLLGPSHKEVLFAINRSVPVCIAQRRPLNCSMCSASFLYNAQLRRHLATEHVGVVATGSAADDYQCRFRCNICGVPQRSRVALQRHEKHKHRLAKYYCAVCRLEFVTPQEARRHRSLMQHKRRTNRHLKRICNNSSGNNQPEREIEHMLHEVLEELQSAVVDADDVVSPPTVRSKRRRLVNNECARCSLSFETPQALVEHRRQSHPMDNHACLSCGGSFQSGQALGRHSRICQPKASTSAAAAVANIASNSAAWKCDKCSFTSQYESDLLYHRFFHSHGSAIGKNELLQCPLCLKQFRKHSLLPHLRNHTDERIFECTECVAKFARRHNLKNHMATMHGKKKNTSTEKRSKNKTAQQSADSPKPKYQCGTCGKILAKKYSLKLHELSHAKVERQYRCHLDDCQYAGLTPEALKIHLISHASGNHKCEHESCHYVGKSELHLKRHLKSHATQEELDKGGKWFSCDQCEFRTRIRGHLKRHMRHHTGEKPHQCPHCAFQCSSMDNLRKHIVKTRKHPGKFIYECSSCEEFRSNSYKEYQQHLAIHKNKVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01322986;
- 90% Identity
- -
- 80% Identity
- -