Basic Information

Insect: Scaptomyza montana
Gene Symbol: -
Assembly: GCA_018904305.1
Location: JAEIGR010000016.1:460537-473565[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.5 3.4e+02 2.1 2.4 3 23 304 326 302 326 0.92

2 15 3.5 2.7e+02 2.5 0.8 3 21 470 488 469 492 0.92

3 15 0.34 26 5.6 0.5 2 23 514 536 513 536 0.93

4 15 0.053 4 8.2 0.7 1 23 553 576 553 576 0.95

5 15 0.12 9.2 7.1 0.2 1 21 581 601 581 605 0.91

6 15 0.018 1.3 9.7 0.2 2 23 668 690 667 690 0.95

7 15 0.21 16 6.3 0.1 1 22 695 716 695 716 0.92

8 15 0.0062 0.47 11.1 2.1 2 23 778 798 777 798 0.96

9 15 1.5e-05 0.0011 19.3 3.0 1 23 804 827 804 827 0.97

10 15 0.0046 0.35 11.5 0.4 1 19 849 867 849 871 0.91

11 15 0.37 28 5.5 0.1 1 23 878 902 878 902 0.97

12 15 3.9 3e+02 2.3 6.2 1 23 907 931 907 931 0.95

13 15 0.0014 0.11 13.2 4.1 1 23 944 966 944 966 0.98

14 15 0.0007 0.054 14.1 3.7 1 22 972 993 972 997 0.93

15 15 4.9 3.8e+02 2.0 1.9 1 23 1003 1026 1003 1026 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.5	3.4e+02	2.1	2.4	3	23	304	326	302	326	0.92
2	15	3.5	2.7e+02	2.5	0.8	3	21	470	488	469	492	0.92
3	15	0.34	26	5.6	0.5	2	23	514	536	513	536	0.93
4	15	0.053	4	8.2	0.7	1	23	553	576	553	576	0.95
5	15	0.12	9.2	7.1	0.2	1	21	581	601	581	605	0.91
6	15	0.018	1.3	9.7	0.2	2	23	668	690	667	690	0.95
7	15	0.21	16	6.3	0.1	1	22	695	716	695	716	0.92
8	15	0.0062	0.47	11.1	2.1	2	23	778	798	777	798	0.96
9	15	1.5e-05	0.0011	19.3	3.0	1	23	804	827	804	827	0.97
10	15	0.0046	0.35	11.5	0.4	1	19	849	867	849	871	0.91
11	15	0.37	28	5.5	0.1	1	23	878	902	878	902	0.97
12	15	3.9	3e+02	2.3	6.2	1	23	907	931	907	931	0.95
13	15	0.0014	0.11	13.2	4.1	1	23	944	966	944	966	0.98
14	15	0.0007	0.054	14.1	3.7	1	22	972	993	972	997	0.93
15	15	4.9	3.8e+02	2.0	1.9	1	23	1003	1026	1003	1026	0.90

Sequence Information

Coding Sequence: ATGAATACATCCGCATCCGAAGATTTGGAGGATGCACATTTGTGCATCAAATGCAATGCGACAATTGTGGGTCTCACCAAGTACATTGAGCATCGTAAACGAAATTGCCGCAATGAGCACCCCACGAAACAAGTGGCGACTATTCCAGCAACAACAGCAACATCGTCACCCAGCGCACAAGTATCGCCACCAATTATGAGTCGTACCAACTTGGATCACAGCTATGATGGCTTTCATTTCGCAGAACCAGAGGCACCGAGCAGTTATCTGCGCAAGGCAGCCGCCAGTCATGGCGGTAAGACCTCAAAGTCCCTAACGGAAACGTATGATCCCACCTATGAGCTGGGAGCTGATCTGTTCTTCTCATCGCTGCAACTGCAAAGCGTATCAACGGGCGGTAAAACCGGTGTACGTCCCGAACGCACCGCCAAGTTGGAACAGAGCTGGCATACGTCAAGCAACTGTTCCGATCCGCTGCTGAAAGCTGTGCGGGAACATGAGGTATCCCACTTTAAGCCACTCAAATTCGTACACTCGCCGGAGACAAGCGACGACGATGAACATGATGACTTTGAAGGCGATGAGGATGATCATGAGCATGAACATGAACACGAACATGATAATGATGCCGATCCGGATCATGATGAAGATTATGATGCAAGACGTCATTCTCCACCAACGGTGCCTGCCACGCACACGGGTGGCAAATGGAAGCCGGAGCATCGTCCACAGTTGCAGCATTCGCATCTGGAACGCATCTCGCCCAGCTGGGATGAGCCATCCGAGGAGCCGCATGATCATCCCCCTGCGGAGCACACGCACGGCAAATGGGTGCCGGGCAGCAAGCAACTAGAGTACCGCGAAAATATTGATCTGACCAAGCTGCAGCAACAAGGTGCCAGCTTCTGGTGCAACATCTGCTGTCGTCGCCTCAAATCGCGCCTCAACTACGAGCAACATCTGCGCAGCGCCTATCATCAGCGACGTGCCGATGCCGAAAGTCAACTGGAGCAGGCCAATCTTGAGAGCGCCAATCTCACACTGACCAACGACTTTTCACAGGTGACACCAACGGCGGCACCAGACCCATCCCTGAGACATCGTCGACGTCGTCGTGCTTATCTTCTGCGCTGTGAACTGTGCCGTCATAGCATGGCTCGTCATCTGATAGGCAAGCATTTGATATCCCACTATCACTATCGACGCCTGCAACAGCAGCAGCAGACCCAGTTGCGACGTCAAAACTCCCTGCACGACATCCTCGAGCACATGGGCAGCATTGTAAGACAGGCGCCGTTTCAATGTCTTCCTTGTCGCTTCTATGCCAATACGGAGGAAACTTTTCAGGCTCATTGGCGCTCCTCAACGCATGTGAAGCTAACGGAACATTTAGGAGGCGACTTCTGGTGTAGCTTTTGTCAGTTCGAGTGTGCGAGCAATGAGCAAATGTGGCAACATTTGTTGGGCGACTCGCACAAAGAGGTGCTCTTTGCAATCAATCGTTCCGTGCCCGTTTGCATTGCCCAACGTCGTCCATTGAACTGTTCCAGCTGCAGTGCTAGTTTCCTGTACAATGCACAACTAAGGCGTCACTTTGCCACGGAGCATGTGGGATTGGTGGCAACTGGCAGTGCCGCCGATGACTATCAGTGTCGCTTTCGTTGTGGCATTTGTGGCGTGGCACAGAGATCTCGAGTAGCACTGCAGCGGCACGAGAAGCACAAGCATCGTTTGGCCAAATACTATTGTGCCGTTTGCCGCATGGAATTTGAGACGCCTCAAGAGGCGCGTCGCCATCGCAGCCTGATGCAACACAAGCGGTGTTCCAACCGTCAGCTAAAACGAAAGTGCAACAGCAGCAGCAGCATTAATCAGCCGGAGCGTGAGATTCAACACATGCTTCACGAGGTTCTAGAGGAGCAGCAGGCGGCACTAGACGCTGCCGCAGAGATGTCAACAGCAACAGCCAGGAGTGCCAAGAGGCGTCGACTGGTCAATAGCCAATGTGGCAGCTGTTTTCTTAGCTTTGAGACGCCTCAAGCGCTAATCGAGCATCGTCGGGAAACCCATCCTGCAGACAATCATGCTTGCCTTAGTTGCGGCGGAAGCTTTCGGTCTGCACAGGCACTGGGAAGCCATACACGCAGATGCCAACCTAAAGCTTCCACCTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCACCTGGAACTGTGATCAGTGCAGCTTTACATCTCAATACGAATCGGATTTGCTCTTTCATCGTTTCTTTCATACGCATGGCTCGGCGATTGGCAAGAATGAGCTGCTCCAGTGTCCACTCTGTCCCAAACAATTTCGCAAGCACTCGTTGCGTCCTCACCTCCGCAATCACACAGACGAAAGGATCTTTGAGTGTACCGAGTGCTCAGCCAAGTTTGTCAGAAGACACAACCTTAAAAACCACATGACCACAATGCATGGGAAAAAGGAGAAAATGTCTGTAGATGCAGATAGAGATAAGACAAAAATACCCAAGCAAACATATCAATGTGGCACGTGTGGCAAAATATTAGCTAAAAAATATTCCCTTAAACTGCACGATATGAGCCATGCTGAGGTGGAGCGTCAATATCGTTGTAACGTTGAGGATTGTCATTATGCTGGTCTAACGCCAGAAGCACTCAAGATCCATCTAATCTCACATGCCAAAGAAAGTCACAAATGTGAACATGATAGCTGTCGATATGTGGGCAAAAGTGAGCTGCATTTAAAAAGACACCTCAAGTCGCATGTGACCCAAAAGGAGCTGGATGATGGCGGCAAATGGTTCTCGTGCGATCAGTGTGAGTTCAGGACCCGCATCAGAGGACATCTGAGGCGGCACATGCGTCGCCACACTGGTGAGAAGCCACATCAGTGTCCCCATTGCGACTTTCAATGCAGCAGCATGGATAATCTACGCAAACATATTCTCAAAACGGGCATCCATCCGGGCAAGTTCATATACGAGTGTTCAACCTGTGACACGTTCAAGAGCAACAACTACAAGGAATATCGGCAACATTTGGTCACGCATAAGATCGAAATAACATAG
Protein Sequence: MNTSASEDLEDAHLCIKCNATIVGLTKYIEHRKRNCRNEHPTKQVATIPATTATSSPSAQVSPPIMSRTNLDHSYDGFHFAEPEAPSSYLRKAAASHGGKTSKSLTETYDPTYELGADLFFSSLQLQSVSTGGKTGVRPERTAKLEQSWHTSSNCSDPLLKAVREHEVSHFKPLKFVHSPETSDDDEHDDFEGDEDDHEHEHEHEHDNDADPDHDEDYDARRHSPPTVPATHTGGKWKPEHRPQLQHSHLERISPSWDEPSEEPHDHPPAEHTHGKWVPGSKQLEYRENIDLTKLQQQGASFWCNICCRRLKSRLNYEQHLRSAYHQRRADAESQLEQANLESANLTLTNDFSQVTPTAAPDPSLRHRRRRRAYLLRCELCRHSMARHLIGKHLISHYHYRRLQQQQQTQLRRQNSLHDILEHMGSIVRQAPFQCLPCRFYANTEETFQAHWRSSTHVKLTEHLGGDFWCSFCQFECASNEQMWQHLLGDSHKEVLFAINRSVPVCIAQRRPLNCSSCSASFLYNAQLRRHFATEHVGLVATGSAADDYQCRFRCGICGVAQRSRVALQRHEKHKHRLAKYYCAVCRMEFETPQEARRHRSLMQHKRCSNRQLKRKCNSSSSINQPEREIQHMLHEVLEEQQAALDAAAEMSTATARSAKRRRLVNSQCGSCFLSFETPQALIEHRRETHPADNHACLSCGGSFRSAQALGSHTRRCQPKASTSXXXXXXXXXXXXXXXXTTWNCDQCSFTSQYESDLLFHRFFHTHGSAIGKNELLQCPLCPKQFRKHSLRPHLRNHTDERIFECTECSAKFVRRHNLKNHMTTMHGKKEKMSVDADRDKTKIPKQTYQCGTCGKILAKKYSLKLHDMSHAEVERQYRCNVEDCHYAGLTPEALKIHLISHAKESHKCEHDSCRYVGKSELHLKRHLKSHVTQKELDDGGKWFSCDQCEFRTRIRGHLRRHMRRHTGEKPHQCPHCDFQCSSMDNLRKHILKTGIHPGKFIYECSTCDTFKSNNYKEYRQHLVTHKIEIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01322986;
90% Identity: iTF_01322263;
80% Identity: -