Basic Information

Insect: Scaptomyza cyrtandrae
Gene Symbol: -
Assembly: GCA_035044605.1
Location: JAWNNS010000650.1:3590093-3603759[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.94 69 4.3 0.6 3 21 461 479 459 483 0.92

2 14 0.02 1.5 9.5 0.4 2 23 505 527 504 527 0.95

3 14 0.067 5 7.9 0.7 1 23 544 567 544 567 0.95

4 14 0.16 12 6.7 0.2 1 21 572 592 572 596 0.91

5 14 0.028 2.1 9.0 0.1 2 23 655 677 654 677 0.94

6 14 0.94 69 4.3 0.1 1 21 682 702 682 703 0.91

7 14 3.2 2.4e+02 2.6 1.4 2 23 722 743 721 743 0.91

8 14 0.0061 0.45 11.1 2.1 2 23 756 776 755 776 0.96

9 14 0.00013 0.0098 16.4 2.4 1 23 782 805 782 805 0.97

10 14 0.00043 0.032 14.8 0.4 1 23 833 855 833 855 0.98

11 14 0.98 72 4.2 0.1 1 23 862 886 862 886 0.92

12 14 0.85 63 4.4 6.9 1 23 891 915 891 915 0.96

13 14 0.0014 0.1 13.2 4.2 1 23 928 950 928 950 0.98

14 14 0.016 1.2 9.8 3.0 1 20 956 975 956 977 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.94	69	4.3	0.6	3	21	461	479	459	483	0.92
2	14	0.02	1.5	9.5	0.4	2	23	505	527	504	527	0.95
3	14	0.067	5	7.9	0.7	1	23	544	567	544	567	0.95
4	14	0.16	12	6.7	0.2	1	21	572	592	572	596	0.91
5	14	0.028	2.1	9.0	0.1	2	23	655	677	654	677	0.94
6	14	0.94	69	4.3	0.1	1	21	682	702	682	703	0.91
7	14	3.2	2.4e+02	2.6	1.4	2	23	722	743	721	743	0.91
8	14	0.0061	0.45	11.1	2.1	2	23	756	776	755	776	0.96
9	14	0.00013	0.0098	16.4	2.4	1	23	782	805	782	805	0.97
10	14	0.00043	0.032	14.8	0.4	1	23	833	855	833	855	0.98
11	14	0.98	72	4.2	0.1	1	23	862	886	862	886	0.92
12	14	0.85	63	4.4	6.9	1	23	891	915	891	915	0.96
13	14	0.0014	0.1	13.2	4.2	1	23	928	950	928	950	0.98
14	14	0.016	1.2	9.8	3.0	1	20	956	975	956	977	0.95

Sequence Information

Coding Sequence: ATGAACACCGAATCTGAGGACCTAGAGGACGCACATTTGTGCATCAAATGCAGCGCAACAATTGTGGGTCTCACCAAGTATATTGAGCATCGTAAACGAAATTGTCTTAGCACCTCCCACAATGAGCACCCAACGAAACAAGTGGTGGTCACaccgacaacaacatcgacaCCCACCGAACAAGTGTCGCCACCAATTATGAGTCGTACGAATTTGGATCACAGCTATGATGGCTTTAACTTTGCAGAGCCAGAGGAGCCGAGTACTTATCTGCGCAAGACAACTGCCAGTCATGGAGGAAAGACCTCAAAGTCCCTAACGGAATCGTATGATCCCACCTATGAATTGGGCGCTGATCTCTTCTTTTCATCGCTGCAACTGCAAAGCGTTTCAACGGGCGGCAAGACAGGCTCACGCTCTGAACGGTCCGCGAAAGAGGAACAGGGTTGGCATACGTCGAGCGATCCGTTGCTGAAAGCGGTACGAGAGCATGAGGTATCCCATTATAAGCAACTAAAATTTGTTAACTCGCCGGAGACAAGCGACGACGATGAACCTGATGACTTTGatggcgatgatgatgatcatgagCATGAGCACGAACATGATGCCGATCCGGATAACGATTTGGATTACGATGCACGTCGTCATTCCCCACCAACGGTGCCTGCCACTCACACGGGTGGCAAATGGAAACCGGAGCATCGTCCTCAATTGCAGCATACACATCTGGAACGCATCTCGCCCAGCTGGGATGAGCCGCCCGAGGAGCCGCTTGATCATCCCCCCGAGGAACATACGCACGGCAAATGGGTGCCGGGCAGCAAACAACTGGAATACCGTGAGAACATTGACCTGACCAAGCTGCAGCAGCCCGACGCCAGCTACTGGTGCAACATCTGCTGTCGCCGCCTCAAATCACGTCTCAACTACGACCAACATCTGCGCAGCGCCTATCATCAGCGACGTGCTGATGCCGAAAGTCAACTGGAGCAGGCCAATCTCGAAAGCGCCAATCTTACACTTACCAAAGACTTTTCACAGGAGACACCATCGGCAGCAGAGCAACTTtcacgtcgtcgtcgtcgtcgtgctCATCATCTGCGCTGTGAACTATGCCGCCATAGCATGGCTCGTCATCTGATGGGCAAGCATTTGATATCCCACTATCACTATAGACgcctgcagcagcaacagaccTCGTTGCGACGTCAGAGCTCCCTGCACGACATCCTGGAGCACATGGGCAGCATTGTGAGACAGGCGCCCTTTCAATGTCTTCCCTGTCGCTTCTATGCCAACACGGAGGAGACTTTTCAGGCTCATTGGCGCTCCTCAACTCATATAGAACTAACGGATCATTTGGGCGGCGATTTCTGGTGTAGCTATTGCCAGTTTGAGTGTGCGAGCAATGAGGAAATGTGGCAACATTTGCTAGatgccacacacaaagagGTGCTCTTTGCCATCAATCGATCGGTGCCCGTTTGCATTGCCCAACGTCGTCCACTCAGATGTTCCATCTGCAGCGCTAGTTTTCTGTACAATGCTCAGCTGAGGCGTCACTTTGCCACAGAGCATGTGGGATTGGTGGCAAGCGGCAGTGCTGCCGATGACTATCAGTGTCGATTTCGTTGTGGCATTTGTGGTGTGCCACAGAGATCTCGGGTGGCGCTGCAGCGGCACGAGAAGCACAAGCATCGTTTGGCCAAATACTATTGtgccgtttgccgtttggAGTTTGAGACGCCGCAAGAGGCGCGTCGCCATCGCAGCCTCATGCAACACAAGCGGCGAGGTAATCGTCAGCTaaaaagtagcagcagcagtaatcAACCGGAACGGGACATTCAACACATGCTGCACGAGGTATTGGAGGAGCTGCAGCCAGCCGTTGTTGACCCAGTCAAAGTGATGTCACCGCCAGCTGTGCGTTCCAAGAGGCGTCGGCTGGTCAACAGCCAATGTGCCAGCTGTTCGCTTAGCTTTGAGACACCTCAGGCACTCGTCGAGCATCGTCGAGATTCGCATCCAACGGACAATCATGCTTGTCTCAGCTGCGGTGGCAGCTTTCAGTCTGCCCAGGCTCTGGGAAGGCATGCACGGAGTTGTCAACCTAAAGCTTCCacctcagcagcagcagcagcagcagctgctgcctggACGTGTGATAAGTGTAGCTTTACATCTCAATACGAATCGGATTTGCTATATCATCGTTTCTTTCACTCGCATGGCTCGACAATTGGCAAGAATGAGCTGCTTCAGTGTCCACTGTGTCCCAAACAGTTTCGCAAGCACTCGTTGCGTCCGCATTTGCGCAATCACACAGATGAAAGGATTTTCGAGTGTACCGAATGTTTGTCCAAGTTCGCCAGAAGACATAACCTCAAAAATCACATGGCCACAATGCACGGCAAAAAGGAAAGGGAAACGTCAGAAAAAGCTAGCGATAAGataaccaaaataaaagcTGGCGACAAGACAACTAAAAAATACCAATGTGGCACGTGTGGCAAAATACTAGCaaaaaaATATTCTCTTAAATTGCATGAGCTAAGCCATGCTAAGGTGGAGCGTCAATATCGTTGTCTCTTGGAGGATTGTAAATATGCGGGTCTCACGCCGGAAGCACTCAAAACCCATCTTAACTCGCATGCGAGTGGAAATCATAAATGTGATTATGAAAACTGTCATTATGTGGGCAAAAGTGAACAGCATTTGAAAAGACACAACAAGTCGCATGTGAGCCAAAAGGAACTGGATGAGGGCGGCAAATGGTTTTCGTGCGATCAATGTGAGTTCCGGACGCGCATCAGGGGACATCTAAAGCGGCACATGCGTCGACATACCGGCGAGAAACCACATCAGTGTCCTCATTGTGCCTTCCAGTGCAGCAGCATGGATAATCTACGCAAGCACATTGTCAAGACGGGCAAACATCCCGGCAAGTTCTTCTACGAGTGTTCATCCTGTGACGCATTCAAGAGCAACAGCTATAAGGAATACCAACAACATTTGGTCATACATCAAAATAAAGTAACTTGA
Protein Sequence: MNTESEDLEDAHLCIKCSATIVGLTKYIEHRKRNCLSTSHNEHPTKQVVVTPTTTSTPTEQVSPPIMSRTNLDHSYDGFNFAEPEEPSTYLRKTTASHGGKTSKSLTESYDPTYELGADLFFSSLQLQSVSTGGKTGSRSERSAKEEQGWHTSSDPLLKAVREHEVSHYKQLKFVNSPETSDDDEPDDFDGDDDDHEHEHEHDADPDNDLDYDARRHSPPTVPATHTGGKWKPEHRPQLQHTHLERISPSWDEPPEEPLDHPPEEHTHGKWVPGSKQLEYRENIDLTKLQQPDASYWCNICCRRLKSRLNYDQHLRSAYHQRRADAESQLEQANLESANLTLTKDFSQETPSAAEQLSRRRRRRAHHLRCELCRHSMARHLMGKHLISHYHYRRLQQQQTSLRRQSSLHDILEHMGSIVRQAPFQCLPCRFYANTEETFQAHWRSSTHIELTDHLGGDFWCSYCQFECASNEEMWQHLLDATHKEVLFAINRSVPVCIAQRRPLRCSICSASFLYNAQLRRHFATEHVGLVASGSAADDYQCRFRCGICGVPQRSRVALQRHEKHKHRLAKYYCAVCRLEFETPQEARRHRSLMQHKRRGNRQLKSSSSSNQPERDIQHMLHEVLEELQPAVVDPVKVMSPPAVRSKRRRLVNSQCASCSLSFETPQALVEHRRDSHPTDNHACLSCGGSFQSAQALGRHARSCQPKASTSAAAAAAAAAWTCDKCSFTSQYESDLLYHRFFHSHGSTIGKNELLQCPLCPKQFRKHSLRPHLRNHTDERIFECTECLSKFARRHNLKNHMATMHGKKERETSEKASDKITKIKAGDKTTKKYQCGTCGKILAKKYSLKLHELSHAKVERQYRCLLEDCKYAGLTPEALKTHLNSHASGNHKCDYENCHYVGKSEQHLKRHNKSHVSQKELDEGGKWFSCDQCEFRTRIRGHLKRHMRRHTGEKPHQCPHCAFQCSSMDNLRKHIVKTGKHPGKFFYECSSCDAFKSNSYKEYQQHLVIHQNKVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01322986;
90% Identity: iTF_01328225;
80% Identity: -