Basic Information

Insect: Scaptomyza graminum
Gene Symbol: L
Assembly: GCA_018901835.1
Location: JAEIFL010000132.1:18315354-18346169[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.2e-05 0.00077 19.6 2.9 1 23 462 484 462 484 0.98

2 18 0.41 26 5.3 6.2 1 23 490 512 490 512 0.97

3 18 2e-07 1.3e-05 25.2 3.2 1 23 518 540 518 540 0.99

4 18 1.4e-05 0.00094 19.3 0.4 1 23 546 568 546 568 0.99

5 18 0.19 13 6.3 0.1 2 23 642 667 641 667 0.92

6 18 0.00016 0.01 16.0 0.7 2 23 704 726 703 726 0.96

7 18 0.032 2.1 8.8 0.7 1 23 791 813 791 813 0.97

8 18 0.006 0.39 11.1 0.1 2 23 821 842 820 842 0.91

9 18 4.5e-05 0.0029 17.7 0.1 1 23 850 874 850 874 0.94

10 18 7.2 4.7e+02 1.4 0.3 2 20 880 898 879 899 0.90

11 18 6 3.9e+02 1.6 1.6 2 23 910 932 909 932 0.95

12 18 0.0029 0.19 12.0 1.1 1 23 984 1007 984 1007 0.97

13 18 0.0075 0.48 10.8 1.6 2 23 1179 1201 1178 1201 0.96

14 18 0.13 8.6 6.8 0.1 1 23 1207 1229 1207 1229 0.92

15 18 0.64 41 4.7 0.4 2 23 1237 1258 1236 1258 0.93

16 18 1.1 73 3.9 0.5 2 23 1356 1377 1356 1377 0.94

17 18 0.034 2.2 8.7 0.0 1 23 1387 1409 1387 1409 0.96

18 18 0.00057 0.037 14.3 1.3 1 23 1414 1436 1414 1436 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.2e-05	0.00077	19.6	2.9	1	23	462	484	462	484	0.98
2	18	0.41	26	5.3	6.2	1	23	490	512	490	512	0.97
3	18	2e-07	1.3e-05	25.2	3.2	1	23	518	540	518	540	0.99
4	18	1.4e-05	0.00094	19.3	0.4	1	23	546	568	546	568	0.99
5	18	0.19	13	6.3	0.1	2	23	642	667	641	667	0.92
6	18	0.00016	0.01	16.0	0.7	2	23	704	726	703	726	0.96
7	18	0.032	2.1	8.8	0.7	1	23	791	813	791	813	0.97
8	18	0.006	0.39	11.1	0.1	2	23	821	842	820	842	0.91
9	18	4.5e-05	0.0029	17.7	0.1	1	23	850	874	850	874	0.94
10	18	7.2	4.7e+02	1.4	0.3	2	20	880	898	879	899	0.90
11	18	6	3.9e+02	1.6	1.6	2	23	910	932	909	932	0.95
12	18	0.0029	0.19	12.0	1.1	1	23	984	1007	984	1007	0.97
13	18	0.0075	0.48	10.8	1.6	2	23	1179	1201	1178	1201	0.96
14	18	0.13	8.6	6.8	0.1	1	23	1207	1229	1207	1229	0.92
15	18	0.64	41	4.7	0.4	2	23	1237	1258	1236	1258	0.93
16	18	1.1	73	3.9	0.5	2	23	1356	1377	1356	1377	0.94
17	18	0.034	2.2	8.7	0.0	1	23	1387	1409	1387	1409	0.96
18	18	0.00057	0.037	14.3	1.3	1	23	1414	1436	1414	1436	0.97

Sequence Information

Coding Sequence: ATGTCAAGGCGCAAACAGGCAAAGCCGCGCGCCTGCTTGAAACTTGGCGAAAAGGAGGAGGAAATTAATGGAGATGCGGCAGCAAAGATGAGCAGGGCAACCGATTTGCTGGAGCCCAAAGAGGAGCTGCTGAGTGCCGATGAAGGCAACGGGGAGGAGGAGGAGGATTACGACGAAGAAGATGAACCCAAAGACGAGGAGGCGGAGGAAGAAGAGGAGGAGCATGATCAGAATGGGCCTCAAAAGGAACAACAACAGAAGCAGCAGCTGAAGCGAGCATCCAATGAATCACAGTTGAGGCAGCAACAAAAGTGGCAGCCAGCTGATGCCGATGTTGCAACAACAAAAGTAGCTGGGGCAGAGGTGCGCGGCGGAGTACACGAAGCTGCAACGGCAGAAGAACTACAACACCCAGGGGAAGCTACGGCTGCTGTAGCAACGTCTCTCGTTGTTGCAACACCAGCAGCAGTTGCCACTGGCAACGCCAATGGACACTGCAACCCAAGGTCCACATCTACTGCCAACATAAATGCCACTCAAGACAAGGATATTGAGGATGCCGATGATGATGCCGACAAAGTAGCGGATGCTGGGGCGGAGGAGGATGATGATGAGGAGTTGGAGGATGATTTGCTTAGCCTCAGCGGCGATGAGGACTACGATGACGAGGAGCTACAAAGCCTGGACAGTTTCTATTCGGGCGTTGACGCCCGTTACTGCGACGGCGACGACAGCGCTTCTGCTGCTTCGGGTTTGCTACGGCGCTTGGCTCTTGGCTCTGATTTCAGTCACATTTTGGTGCTCGCGGCAATTGGACGTTACGAACGCGCAACAACAACAACAACAACGGCTAATGCGATCCTTTGGCGTCGTTTGGTGTCGCCTCGCGTAGAGTTGAACAATGCCATGATGGCCTTAAAGATGTTATATCGCGGTCCTAGTTCGCGTTTGGAGAATTTAATCGAAAAGATTCAAGCCACCAAGGAGATTACAAATAACGATATGTACAGCACGCACACCTCCTCGAGCTATTCGCCAAGCATCTCGGATGGCACACTGACACCTAACTCGGTACAGCAGCCAAAGTCCGAGGAACCCCAAACCGAAGACGCCAAGTCCAAGGCGAATGGTGAAGGTTCTGCTCTGGAGCAACAGGACTTAGCCAAGCCAAAGAGACCTGCCCATTTGCATCATCACCATCATCATTATCATCATCAGCAGGCGCTGAAAATTGCCAACAAGCTGCGCAAAATCAATAAGGAAGCCAAGTTGGCAGCAGCCGCTGAAGCCGGCTCAGGACACGGAGGTGCTGGCACCGTAGCAGCCGCCAACAAGTTTGATAAGTTGACAGGCGAGAGAATTAAAAGTCGCGGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGTCTCGGCTACTTGAAGCATCACGTGCAGAGCCATGCCGAACATTTGCCTTTCAAATGCGAATACTGCGCCAAGTTATTCAAACATAAGCGTTCGCGAGATCGTCATAAGAAGTTGCATACCAACGAAAGGAACTACAAGTGTCCGCATTGTGAGGCAGCTTTCTCAAGAAGCGACCATTTAAAGATTCACATGAAGACGCACGATATACAGAAACCCTTTCAGTGCAGCATGTGCAATCGTGGATATAATACAGCAGCCGCCTTAACCTCCCACATGCAGAAGCACAAGAAGAATGCTGCAATTCTGGCAGCCGGTGGTAATCCCAATGCTCTGAATTATAGTCCACGATCCACGGGCTCCGCCTCAATCTCTAGCAATGGTAGTCTGCACAAGCGGCGCTACGCCTTGGCTCTGGCTTCTGATAGCAGTCCAAGTCGTCTGGAGTTCCCCAAGCGGGCGCGTGCTGGAGTCGTTCCCACAACGCCTACTCCAACGCCCCTATTGAGATGCAGTTACTGCAGTCCCAAAGTAATGGAATTCAGCAGTCTCGAACAATTGAATGCACATCTTCAGGCGGCACACGAACAGCCGCAGCAGCAGCCGCATCAGCCGCAGGGAGGCAGAAGCTCCGCAACCATAACCAACACAACGGAGACAGTAGAGCCTCCGCCGACTAATGGTTTTCAGCTCAATTGCGAATATTGTACAATGAAATTTGTCAATATAGCGTCACTTTTTCAACATATGCGAACGACTCATTTGGATCGTCTGAGCAGTCCAAGTTCCTACTATGAACACTTTAATCGTCTGGCAACTGCAGGCACTTTTAGTCCTCGTTTGGAGATGCCAAAAATCAAGCAGGATCTGCCAAGTCCTACAGCAGAAGAACTTCCGACTGATCTGAGCAGCAATAAGCGAAGAAATTTGACACCGCCAGCGCCACCTGGCGTCTTCTTTTGCAATCAATGCAATGCCGGGCTGCCAGACTTTGAAAGCTTTCGCAATCATTTGAAAACACACATTGCCGAGGGCATGCAATTGATTTGTCCCCACTGCGGCTTGAGTCTGCCGGAACAATCCGAATTCGAACGTCATGTCGTGGCACATTTTTTAATCACCGGCTCCGAGTTCAATTGTGGCGCCAACTGTGGCAAGTCCTTTGCCAAATCGGATGAGCTGCAGCAGCATTTGATCAGTGAACATGTTCAGACATTATTAAAGTGTTCCATCTGCTCGGAGTTGTGTGAGAATCGCATGACCATGCAGCTCCACTTGGCCTGCGCCCATAGTCAGGAGACGAAACTACTCAGATGCAGCGCGTGCTTGGAACTCTTTCGCAATGACACGGATTTCCATGTACACGTCAAGACGCGACATCAGCTGGTGGGCGGAGGAGGTGCTTCTGCTGGACAAGGCGGACAAGGACCAACGACTGCATCGCCAGCGAGTTCCATGCAGTGCATGTTTTGTCGGGCTGTTTGCGCGTCCGAGTTGGAAATGCATTTCCATTTGGCAGCCCATGCCCGGCAATTCCGTTGCCCCAGCTGCCCCGAGACGTTCCATGTGGAGTTCCTACTCGATCGTCACATGCAGAGTCAACATGGTGGCGGTGTCAAGGACAAGCAGGAGCAGTCCACCAATCAGATGGGCAGTCTGTATGTGAATGCTTTGTTGCCACCTTTGGCGGCTGCCGCTGCAGCTGCTGCAGCTGCCACAAACAATAACAGTAATCTGCATATCGATTACAATGTGGCATTTAAGGGACTCTTTGGTGGTGGAAATGCCACGACCACAAATGCACAGGCAGCCAACAAGTTCTACAGTCCATTGCAGGTTGATACGAGTGCTTTGAAACCACAACAGACTCCGCATCCTGCACTCATGTACGGCCTCAGTCAACGCTATTTGATGGAGATGTATGCAGCAAAGGCAACTTCCCCAGCAGCCAGTGCACCCGAACTGCCGGCACAAGCAACCCAAGCAGCGAATGCAACGGCATCCAGCACTGGAAGCAGCTACAGCTGTGGCATGTGCGAACGTCAAGATTTGCGCAGCGAGGCGGAACTGCATTCACATAGGAAACTAGCTCACAATCTGAAGACGGGAGTCAGTTTACGTTGCGCCTATTGCTCGGGCAACTATAAATCTCGTGCGGAACTGGAGCAGCACATGAAGAGCTGTCACAATTCGAGTGGGAAACACAAGTGTCTCATTTGTGATGAGATCTTTCCATCGCCAGCAATACTTGCCGAGCATAAGCTGCAACATTCCAAGGTGGGTCAGTCGGGCAAATGTGCCCATTGTGGCCAGCAGTTGGAGCATGTGGCGGCATTTCGTGCACATCTCGGAGAGCATGGGAACGATGGTAATTTACCCATGGCTTGCATTTGTTGTCGTCAAACTTTACACTCTGAATTCGAACTGAGTTTACATGCAAAGTTCCATACAAAATCTCCAAATTGCGGTAGTCTCCAGGAGCCCGTTTGTGCTTTGTGCTTGGAACCCTTGCCGGAGGCGGGAGAAACTGCTAAACTGTGTGACAAATGCTGCCGCAAACATAATCTCAATGGCAAGCGGAACAAGGAAGCTCTTCCAGTGGTAGCTCCTCAACAACCCGCAGCAACTACAGTGGGTTATCTGGAGAATCGTTGTAATCTCTGCAAGCTTATATTGCCACACGCTCAAAAACTCCAGGAACATTTGGTGGAGCACACGTTTGCCGGCACCGAGCAGCGAGGTTTCAACTGCTACATTTGCTCAGCGGTCTTTACGGCTCCGGGTGGTCTCCTCACGCACATTGCGGAGCATGGTGCTCGACCCTACGACTGTAATTTGTGCCCCGAAAAGTTCTTTTTCCGTGCCGAACTCGAGCATCATCAGCGTGCACATGAACTGCGTCAAAACCCAGCACTGCCTAATCCACCACCCAAACAGGAGAATCACAGCTCCTCGGCCAGCTCACCCATTCTCAGTCCCAGTCATGTGAAGCAGGAGCTTTATGAGTCCGAAACTGCAGCCTCACCACAACAGCAAGACGAGTCACCTGCCGCGGATGACGAGGAATACATTGAAGTCGAGCAGGTTCCGCATGAAACCCGCTCCAACGAACTGTTATCCGGCGGTGGACAGACCGAACGCTCCAGCAGCAGTGCCTGA
Protein Sequence: MSRRKQAKPRACLKLGEKEEEINGDAAAKMSRATDLLEPKEELLSADEGNGEEEEDYDEEDEPKDEEAEEEEEEHDQNGPQKEQQQKQQLKRASNESQLRQQQKWQPADADVATTKVAGAEVRGGVHEAATAEELQHPGEATAAVATSLVVATPAAVATGNANGHCNPRSTSTANINATQDKDIEDADDDADKVADAGAEEDDDEELEDDLLSLSGDEDYDDEELQSLDSFYSGVDARYCDGDDSASAASGLLRRLALGSDFSHILVLAAIGRYERATTTTTTANAILWRRLVSPRVELNNAMMALKMLYRGPSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTLTPNSVQQPKSEEPQTEDAKSKANGEGSALEQQDLAKPKRPAHLHHHHHHYHHQQALKIANKLRKINKEAKLAAAAEAGSGHGGAGTVAAANKFDKLTGERIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRLEFPKRARAGVVPTTPTPTPLLRCSYCSPKVMEFSSLEQLNAHLQAAHEQPQQQPHQPQGGRSSATITNTTETVEPPPTNGFQLNCEYCTMKFVNIASLFQHMRTTHLDRLSSPSSYYEHFNRLATAGTFSPRLEMPKIKQDLPSPTAEELPTDLSSNKRRNLTPPAPPGVFFCNQCNAGLPDFESFRNHLKTHIAEGMQLICPHCGLSLPEQSEFERHVVAHFLITGSEFNCGANCGKSFAKSDELQQHLISEHVQTLLKCSICSELCENRMTMQLHLACAHSQETKLLRCSACLELFRNDTDFHVHVKTRHQLVGGGGASAGQGGQGPTTASPASSMQCMFCRAVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGGVKDKQEQSTNQMGSLYVNALLPPLAAAAAAAAAATNNNSNLHIDYNVAFKGLFGGGNATTTNAQAANKFYSPLQVDTSALKPQQTPHPALMYGLSQRYLMEMYAAKATSPAASAPELPAQATQAANATASSTGSSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNYKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGQQLEHVAAFRAHLGEHGNDGNLPMACICCRQTLHSEFELSLHAKFHTKSPNCGSLQEPVCALCLEPLPEAGETAKLCDKCCRKHNLNGKRNKEALPVVAPQQPAATTVGYLENRCNLCKLILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPGGLLTHIAEHGARPYDCNLCPEKFFFRAELEHHQRAHELRQNPALPNPPPKQENHSSSASSPILSPSHVKQELYESETAASPQQQDESPAADDEEYIEVEQVPHETRSNELLSGGGQTERSSSSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00552516; iTF_00535535; iTF_00543951; iTF_00511485; iTF_01324331; iTF_01323537; iTF_01322102;
90% Identity: -
80% Identity: -