Basic Information

Insect: Scaptomyza flava
Gene Symbol: L
Assembly: GCA_003952975.1
Location: RKRM01000126.1:102245-109544[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 8.5e-06 0.00064 19.9 2.9 1 23 160 182 160 182 0.98

2 18 0.29 22 5.6 6.2 1 23 188 210 188 210 0.97

3 18 1.4e-07 1.1e-05 25.5 3.2 1 23 216 238 216 238 0.99

4 18 1e-05 0.00079 19.6 0.4 1 23 244 266 244 266 0.99

5 18 0.14 11 6.6 0.1 2 23 340 365 339 365 0.92

6 18 0.00011 0.0085 16.4 0.7 2 23 398 420 397 420 0.96

7 18 0.023 1.7 9.1 0.7 1 23 485 507 485 507 0.97

8 18 0.0043 0.33 11.4 0.1 2 23 515 536 514 536 0.91

9 18 3.2e-05 0.0025 18.1 0.1 1 23 544 568 544 568 0.94

10 18 3.8 2.9e+02 2.1 0.3 2 20 574 592 573 593 0.91

11 18 4.3 3.2e+02 2.0 1.6 2 23 604 626 603 626 0.95

12 18 0.0021 0.16 12.4 1.1 1 23 677 700 677 700 0.97

13 18 0.0053 0.41 11.1 1.6 2 23 872 894 871 894 0.96

14 18 0.095 7.2 7.2 0.1 1 23 900 922 900 922 0.92

15 18 0.21 16 6.1 0.4 2 23 930 951 929 951 0.95

16 18 0.33 25 5.4 1.2 1 23 1048 1070 1048 1070 0.94

17 18 0.04 3 8.3 0.0 1 23 1080 1102 1080 1102 0.94

18 18 0.00017 0.013 15.8 1.9 1 23 1107 1129 1107 1129 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	8.5e-06	0.00064	19.9	2.9	1	23	160	182	160	182	0.98
2	18	0.29	22	5.6	6.2	1	23	188	210	188	210	0.97
3	18	1.4e-07	1.1e-05	25.5	3.2	1	23	216	238	216	238	0.99
4	18	1e-05	0.00079	19.6	0.4	1	23	244	266	244	266	0.99
5	18	0.14	11	6.6	0.1	2	23	340	365	339	365	0.92
6	18	0.00011	0.0085	16.4	0.7	2	23	398	420	397	420	0.96
7	18	0.023	1.7	9.1	0.7	1	23	485	507	485	507	0.97
8	18	0.0043	0.33	11.4	0.1	2	23	515	536	514	536	0.91
9	18	3.2e-05	0.0025	18.1	0.1	1	23	544	568	544	568	0.94
10	18	3.8	2.9e+02	2.1	0.3	2	20	574	592	573	593	0.91
11	18	4.3	3.2e+02	2.0	1.6	2	23	604	626	603	626	0.95
12	18	0.0021	0.16	12.4	1.1	1	23	677	700	677	700	0.97
13	18	0.0053	0.41	11.1	1.6	2	23	872	894	871	894	0.96
14	18	0.095	7.2	7.2	0.1	1	23	900	922	900	922	0.92
15	18	0.21	16	6.1	0.4	2	23	930	951	929	951	0.95
16	18	0.33	25	5.4	1.2	1	23	1048	1070	1048	1070	0.94
17	18	0.04	3	8.3	0.0	1	23	1080	1102	1080	1102	0.94
18	18	0.00017	0.013	15.8	1.9	1	23	1107	1129	1107	1129	0.97

Sequence Information

Coding Sequence: ATGATGGCCTTAAAGATGTTATATCGCGGTCCTAGTTCGCGTTTGGagaatttaattgaaaagaTTCAAGCCACCAAGGAGATAACAAATAACGATATGTACAGCACGCATACCTCCTCGAGCTATTCGCCAAGCATCTCGGATGGCACACTGACACCTAACTCGGTTCAGCAGCCAAAGTCCGAGGAACCCCAAACCGAGGAGTCCAAGTCCAAGGCAAATGGTGAAGGTTCTGCTATGGAGCAACAGGACTTACCCAAGCCAAAGAGACCTGCTCATTTGcaccatcaccatcatcattatcatcatcagcagGCGCTGAAAATAGCCAACAAGCTGCGCAAAATCAATAAGGAAGCCAAGTTGGCAGCAGCCGCCGCAGCCGGAGCAGGACATGGAGGTGCAGGCACCGGAGCAGCCGCCAACAAGTTTGATAAGTTGACAGGCGAAAGCATTAAAAGTCGCGGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGTCTCGGCTACTTGAAGCACCACGTGCAGAGCCATGCCGAACATTTGCCTTTCAAATGCGAATACTGCGCCAAGTTATTCAAACATAAGCGTTCCCGAGATCGTCATAAGAAGTTGCATACAAACGAAAGGAACTACAAGTGTCCGCATTGTGAGGCAGCTTTCTCAAGAAGCGATCATTTAAAGATTCACATGAAGACGCACGATATACAGAAACCCTTTCAGTGCAGCATGTGCAATCGTGGATATAATACGGCTGCCGCTTTAACCTCTCACATGCAGAAGCACAAGAAGAATGCTGCAATCCTGGCAGCTGGGGGTAATCCCAATGCTCTGAACTATAGTCCACGTTCCACGGGTTCTGCCTCGATCTCTAGCAATGGTAGTCTACACAAGCGTCGCTATGCTTTGGCACTTGCTTCGGATAGCAGTCCAAGTCGTCTGGAGTTCCCCAAGCGGGCACGTGCTGGAGTATTTCCAACTACGCCTACTCCAACGCCCCTGTTGAGATGCAGTTACTGCAGTCCCAAAGTAATGGAATTCAGCAGTCTCGAACAATTGAATGCACACCTTCAGGCGGCAcacgaacagcagcagcagcaacaacagggAGGAAGAAGCTCTGCAACCATAACCAACAACACGGAAACAGTAGAGCCTCCCACTAATGGTTTTCAGCTCAATTGCGAATATTGTACAATGAAATTTGTCAATATAGCGTCACTTTTTCAACATATGCGAACAACTCATTTGGATCGACTGAGCAGTCCAAATTCCTACTATGAACACTTTAATCGTCTGGCAACTGCAGGCACGTTTAGTCCTCGTTTGGAGATGCCAAAAATCAAGCAGGATCTGCCAAGTCCTCCAGCAGAAGAACTTCCGACAGATCTAAGCAGCAATAAACGAAGAACTTTAACACCACCCGCGCCACCTGGCGTCTTCTTTTGCAATCAATGCAATGCAGGGTTGCCAGACTTCGAAAGCTTTCGCAATCATTTGAAAACACACATTGCCGAGGGCATGCAATTGATTTGTCCCCACTGCGGCTTGAGTCTACCGGAACAATCTGAATTTGAACGTCATGTTGTGGCACATTTTTTAATCACAGGCTCCGAGTTCAATTGTGGCGCCAACTGTGGCAAATCCTTTGCCAAATCGGATGAACTGCAGCAGCATTTGATCAGTGAACATGTTCAGACATTACTAAAGTGTTCCATCTGCTCGGAGTTGTGTGAGAATCGCATGTCCATGCAGCTCCACTTGGCCTGTGCTCATAGTCAGGAGACGAAGCTGCTCCGGTGCAGTGCGTGCTTGGAGCTCTTTCGCAATGATACGGATTTCCATGTGCACGTCAAGACGCGACATCAGCTGGTGGGTGGAGGAGGTGCTTCTGCTGGTCAAGGAGGTGGACCACCGACTGCATCTCCAGCGAATCCCTTGCAATGCATGTTTTGTCGCGCTGTTTGCGCCTCAGAGTTGGAAATGCATTTCCATTTGGCGGCCCATGCCCGACAATTCCGTTGTCCCAGTTGCCCCGAGACGTTCCATGTGGAGTTTCTACTCGATCGTCATATGCAGAGTCAACATGGTGGTGGTGTCAAGGATAAGCAGGAGCAGTCCACAAACCAGATGGGCAGTCTGTATGTGAATGCTTTGTTGCCACCTTTGGCGgctgccgctgcagcagctgctgctgccacaaatAATAACAGTAATCTCCATATCGATTACAATGTGGCCTTTAAAGGACTTTTTGGTGGTGgaaatgccacgcccacaaatgcACAGGCAGCCAACAAGTTCTACAGTCCATTGCAGGTTGATACGAGTGCTTTGAAGCCACAACAAACGCCACATCCTGCACTCATGTACGGCCTCAGTCAACGTTATTTGATGGAGATGTATGCAGCTAAAGCAACTTCCCCAGCAGCCAGTGCACCCGAACTACCGGCACAAGCAACCCAAGCAGCGAATGCAACGGCATCCAGCACTGGCAGCAGTTACAGCTGTGGCATGTGTGAGCGTCAGGATTTGCGCAGTGAGGCGGAACTACATTCACATCGGAAACTAGCTCATAATCTGAAGACTGGAGTCAGTTTGCGATGTGCCTACTGCTCGGGAAATTATAAATCTCGTGCGGAACTGGAGCAGCATATGAAGAGCTGTCACAATTCGAGTGGGAAACACAAGTGTCTGATTTGTGATGAGATCTTTCCATCGCCAGCAATACTGGCCGAGCATAAGCTCCAACATTCCAAGGTGGGTCAGTCGGGGAAATGTGCCCATTGTGGCCAGCAGTTGGAGCATGTGGCTGCATTTCGTGCACATCTCGAAGAGCATGGTAACGATGGTAATTTACCCATGGCTTGCATTTGTTGCCGTCAAACTTTACACTCTGAATTCGAATTGAGCTTACATGCAAAGTTCCATACAAAATCTCCAAATTGCGGTAGTCTCCAGGAGCCCGTTTGTGCTTTGTGCTTGGAACCCTTGCCCGAGGCGGGAGAAACTGCTAAATTGTGTGACAAATGCTGCCGCAAACATAATCTCAATGGCAAGCGAAACAAGGAAGGCCCTCCGGTGGTAGCTCCTCAACAACCCGTAGCCACCACAGTTGGATATCTGGAGCATCGTTGTAATCTCTGCAAGCTTATACTGCCACACGCGCAAAAGCTCCAGGAGCACCTGGTGGAGCATACGTTTGCTGGTACCGAACAGCGAGGTTTCAACTGCTACATTTGCTCAGCGGTATTTACGGCTCCGGGTGGTCTCCTGGCTCACATTGGGGAGCATGGTGCTCGACCCTACGATTGTAATTTGTGCccagaaaagttttttttccgTTCCGAACTCGAGCATCATCAGCGTGCACATGAACTACGTCAAATCTCAGCACCACCAAATCCGGCTCCTGCGGTACGTCCACCACCCAAACAGGAGAATCACAGCTCCTCGGCCAGCTCACCCATTCTCAGTCCCAGTCATGTGAAGCAGGAGCTTTATGAGTCAGAAACCGCAGCCTCGCCACAACAGCCAGAAGAATACCCTGCCCAGGATGAGGAGGAGTACATCGAGGTCGAGCAGGTTCCGCATGAAACCCGCTCCAATGAACTGTTATCCGGTGGACAGACCGAACGCTCCAGCAGCAGTGCCTGA
Protein Sequence: MMALKMLYRGPSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTLTPNSVQQPKSEEPQTEESKSKANGEGSAMEQQDLPKPKRPAHLHHHHHHYHHQQALKIANKLRKINKEAKLAAAAAAGAGHGGAGTGAAANKFDKLTGESIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRLEFPKRARAGVFPTTPTPTPLLRCSYCSPKVMEFSSLEQLNAHLQAAHEQQQQQQQGGRSSATITNNTETVEPPTNGFQLNCEYCTMKFVNIASLFQHMRTTHLDRLSSPNSYYEHFNRLATAGTFSPRLEMPKIKQDLPSPPAEELPTDLSSNKRRTLTPPAPPGVFFCNQCNAGLPDFESFRNHLKTHIAEGMQLICPHCGLSLPEQSEFERHVVAHFLITGSEFNCGANCGKSFAKSDELQQHLISEHVQTLLKCSICSELCENRMSMQLHLACAHSQETKLLRCSACLELFRNDTDFHVHVKTRHQLVGGGGASAGQGGGPPTASPANPLQCMFCRAVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGGVKDKQEQSTNQMGSLYVNALLPPLAAAAAAAAAATNNNSNLHIDYNVAFKGLFGGGNATPTNAQAANKFYSPLQVDTSALKPQQTPHPALMYGLSQRYLMEMYAAKATSPAASAPELPAQATQAANATASSTGSSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNYKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGQQLEHVAAFRAHLEEHGNDGNLPMACICCRQTLHSEFELSLHAKFHTKSPNCGSLQEPVCALCLEPLPEAGETAKLCDKCCRKHNLNGKRNKEGPPVVAPQQPVATTVGYLEHRCNLCKLILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPGGLLAHIGEHGARPYDCNLCPEKFFFRSELEHHQRAHELRQISAPPNPAPAVRPPPKQENHSSSASSPILSPSHVKQELYESETAASPQQPEEYPAQDEEEYIEVEQVPHETRSNELLSGGQTERSSSSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01322853;
90% Identity: iTF_01324331; iTF_01327350;
80% Identity: -