Rpad010439.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- Lac
- Assembly
- None
- Location
- scf7180000008446.652723:428722-462702[-]
Transcription Factor Domain
- TF Family
- CSL
- Domain
- BTD domain
- PFAM
- PF09270
- TF Group
- Beta-Scaffold Factors
- Description
- Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.15 1e+03 0.3 0.0 46 82 66 101 51 123 0.71 2 2 5.3e-08 0.00035 21.2 0.0 31 97 139 209 133 218 0.82
Sequence Information
- Coding Sequence
- ATGACAGCAGTATCGTCCACGTACTTTTGGTCAATGCTCGTTTTCACGATGGTCCACAACACCAAAGAAATTCTATTCAGCGATACACCAAAATTCAGCGACCGGATGGATAATTTAACAGTAACTGTCGGTCGAGATGCGATCCTCGAGTGCGTCGTAGAATCACTGTCGACATATAAGGTTGCCTGGCTGAGAGTGGACACACAGACGATACTGTCTATACAGACGCTTATAGTGACGAAAAATAACCGAATGGAGGTAACGCACACGGACCAAAGGGTGTGGAGATTGCACATCAAAAACGTACGACAGAGCGACCGTGGATTTTATATGTGCCAGATAAACACGGACCCCATGAAGAATCAAATCGCGTATCTTGATGTAGTCGTGCCTCCAGATATTCTAGACTACCCAACCAGTTCAGACATGGTAGTACACGAAGGTAGTAACGTAACATTGCAATGCGCCGCTACAGGATACCCAAGTCCAACGATAACATGGCGAAGAGAAGACAACCATAACATCGTGATTTCTAACACGTTAACTGTTGCAGTAGTGGATAGTGCGACGCTTACCTTTCATCGTGTGACGAGACAACACATGGGTTCATATCTTTGCATTGCTTCCAATGGCGTGCCGCCGACAGTCAGCAAGCGCATTACTCTGATCGTCCACTTCGCTCCCATGGTTTGGATTCAAAATCAACTAGTCGGTGCTTTTGTGGGAGATCGATTGTCAATAGAATGTCACGTTGAAGCATTCCCTAAGTCCATAAATTATTGGTCGTCAGAAAACGGAAACTTACTAACTCAAGGAGATAATTACGATACAACGTTAAAAGAAGTCAATTATAAAACAGAAATGAGATTAACTATTAATCAAATAAAAGAAAAACATTTTGGCACATACCATTGTGTTTCAAAAAACTCTTTAGGTGCAACGGACGGGACTATCAAAGTTTATAAATTGCCAGGAAAAAACTGGAACAATAATTATCAAACGTCCGTGACGGCTTCAAACAACGGCCTGCAGCATATTACAGGGTCCACATCTAATAGAGAAGGGAAAAATAACTGTGTATCGATTAATCCTAAACCTTCAGTAATTATTTATTGTATTCTCTTATGCGGAATGCTGTTATCCAAATCACCATAA
- Protein Sequence
- MTAVSSTYFWSMLVFTMVHNTKEILFSDTPKFSDRMDNLTVTVGRDAILECVVESLSTYKVAWLRVDTQTILSIQTLIVTKNNRMEVTHTDQRVWRLHIKNVRQSDRGFYMCQINTDPMKNQIAYLDVVVPPDILDYPTSSDMVVHEGSNVTLQCAATGYPSPTITWRREDNHNIVISNTLTVAVVDSATLTFHRVTRQHMGSYLCIASNGVPPTVSKRITLIVHFAPMVWIQNQLVGAFVGDRLSIECHVEAFPKSINYWSSENGNLLTQGDNYDTTLKEVNYKTEMRLTINQIKEKHFGTYHCVSKNSLGATDGTIKVYKLPGKNWNNNYQTSVTASNNGLQHITGSTSNREGKNNCVSINPKPSVIIYCILLCGMLLSKSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00135080; iTF_01032651; iTF_01167371; iTF_01303953; iTF_01304625; iTF_00972820; iTF_00018780; iTF_01328382; iTF_01432800; iTF_00468737; iTF_01169624;
- 90% Identity
- iTF_00468737;
- 80% Identity
- -