Rnym003517.1
Basic Information
- Insect
- Rhopalosiphum nymphaeae
- Gene Symbol
- Lac
- Assembly
- GCA_036289425.1
- Location
- JAZAQC010000006.1:12371849-12388687[+]
Transcription Factor Domain
- TF Family
- CSL
- Domain
- BTD domain
- PFAM
- PF09270
- TF Group
- Beta-Scaffold Factors
- Description
- Members of this family of DNA binding domains adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and co-repressors (SMRT/N-Cor and CIR) [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.41 2.6e+03 -1.0 0.0 46 68 10 32 5 61 0.77 2 2 4.2e-08 0.00027 21.5 0.0 31 97 83 153 77 162 0.80
Sequence Information
- Coding Sequence
- ATGTACATGCTTGTTGCCTGGCTAAGAGTGGACACACAGACAATACTGTCTATACAAACGCTTGTAGTGACGAAAAACGACCGAATGGAGGTAACGCACACAGACCTCAGGGTGTGGAGACTGCACATCAAAAACGTTCGACAGAGCGACCGCGGATTTTATATGTGCCAGATAAATACGGACCCGATGAAGAATCAAATTGCGTATCTTGATGTAGTCGtaCCTCCAGATATTCTAGACTACCCAACCAGCTCAGACATGGTAGTACATGAAGGTAGTAATGTGACATTGCAATGTGCCGCTACAGGATACCCAAGTCCAACGATAACATGGCGAAGAGAAGACAACCATAACATCGTGATTTCTAACACGTTAACTGTTGCAGTAGTTGATAGTTCGACACTTACCTTTCACCGTGTGACAAGACAACACATGGGTTCATATCTTTGCATTGCTTCCAATGGCGTGCCGCCGACAGTCAGCAAGCGCATTACTCTGATCGTCCACTtcGCTCCCATGGTTTGGATTCAAAATCAACTAGTCGGTGCTTTTGTGGGAGATCGATTGTCAATAGAATGTCACGTTGAAGCATTCCCAAAGTCCATAAATTATTGGTCGTCAGAAAACGGAAACTTACTAACTCAAGGAGATAATTATGATACAACGTTAAAAGAAGTCAATTATAAAACCGAAATGAGATTAACTATTAATCAAATAGAAGAAGAACATTTTGGCACATATCATTGTGTTTCAAAAAACTCTTTAGGTGCAACGGACGGGACTATCAAAGTTTATAaattacCAGGAAAAAACtggaacaataattatcaaacgTCCGTGACGGCTTCAAACAACGGCCTGCAGCATATTACAgGGTCCACATCTAATAGAGAAGGGAAAAATAACTGTGTATCGATCAATCCTAAACTTTCAGtaatttttcattgtattCTCTTATGCGGAATACTATTATCCAAATCAGCATAA
- Protein Sequence
- MYMLVAWLRVDTQTILSIQTLVVTKNDRMEVTHTDLRVWRLHIKNVRQSDRGFYMCQINTDPMKNQIAYLDVVVPPDILDYPTSSDMVVHEGSNVTLQCAATGYPSPTITWRREDNHNIVISNTLTVAVVDSSTLTFHRVTRQHMGSYLCIASNGVPPTVSKRITLIVHFAPMVWIQNQLVGAFVGDRLSIECHVEAFPKSINYWSSENGNLLTQGDNYDTTLKEVNYKTEMRLTINQIEEEHFGTYHCVSKNSLGATDGTIKVYKLPGKNWNNNYQTSVTASNNGLQHITGSTSNREGKNNCVSINPKLSVIFHCILLCGILLSKSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305314;
- 90% Identity
- iTF_00468737;
- 80% Identity
- -