Basic Information

Insect: Rhopalosiphum nymphaeae
Gene Symbol: L
Assembly: GCA_036289425.1
Location: JAZAQC010000026.1:4931689-4963161[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 3.2e-06 0.00038 21.2 1.2 1 23 255 277 255 277 0.98

2 22 1.7 2.1e+02 3.2 7.0 1 23 283 305 283 305 0.97

3 22 7e-07 8.4e-05 23.3 5.6 1 23 311 333 311 333 0.99

4 22 8.8e-06 0.0011 19.8 0.9 1 23 339 361 339 362 0.96

5 22 0.00013 0.016 16.1 2.0 1 23 379 401 379 402 0.96

6 22 0.0071 0.86 10.7 0.7 1 23 426 449 426 449 0.97

7 22 3 3.7e+02 2.4 1.0 1 23 487 510 487 510 0.94

8 22 0.0042 0.5 11.4 2.1 2 23 697 718 696 718 0.94

9 22 0.00014 0.017 16.0 1.5 1 23 726 749 726 749 0.96

10 22 0.00016 0.02 15.8 0.6 1 23 754 777 754 777 0.95

11 22 0.00065 0.078 14.0 0.8 2 23 827 848 826 848 0.96

12 22 0.081 9.8 7.3 3.6 1 23 852 874 852 875 0.96

13 22 1 1.3e+02 3.9 0.2 3 23 919 941 918 941 0.86

14 22 0.0012 0.14 13.1 4.6 2 23 955 976 954 976 0.96

15 22 0.0027 0.32 12.0 0.3 1 23 986 1008 986 1008 0.98

16 22 0.67 81 4.5 2.9 2 23 1016 1037 1015 1037 0.96

17 22 0.0027 0.33 12.0 0.1 2 23 1112 1134 1112 1134 0.97

18 22 0.14 16 6.7 1.3 1 23 1138 1160 1138 1160 0.97

19 22 0.07 8.4 7.6 0.1 2 23 1172 1193 1171 1193 0.95

20 22 0.008 0.97 10.5 0.0 1 23 1201 1224 1201 1224 0.96

21 22 0.56 67 4.7 0.2 1 23 1231 1255 1231 1255 0.94

22 22 6.7 8e+02 1.3 3.4 1 22 1282 1303 1282 1305 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	3.2e-06	0.00038	21.2	1.2	1	23	255	277	255	277	0.98
2	22	1.7	2.1e+02	3.2	7.0	1	23	283	305	283	305	0.97
3	22	7e-07	8.4e-05	23.3	5.6	1	23	311	333	311	333	0.99
4	22	8.8e-06	0.0011	19.8	0.9	1	23	339	361	339	362	0.96
5	22	0.00013	0.016	16.1	2.0	1	23	379	401	379	402	0.96
6	22	0.0071	0.86	10.7	0.7	1	23	426	449	426	449	0.97
7	22	3	3.7e+02	2.4	1.0	1	23	487	510	487	510	0.94
8	22	0.0042	0.5	11.4	2.1	2	23	697	718	696	718	0.94
9	22	0.00014	0.017	16.0	1.5	1	23	726	749	726	749	0.96
10	22	0.00016	0.02	15.8	0.6	1	23	754	777	754	777	0.95
11	22	0.00065	0.078	14.0	0.8	2	23	827	848	826	848	0.96
12	22	0.081	9.8	7.3	3.6	1	23	852	874	852	875	0.96
13	22	1	1.3e+02	3.9	0.2	3	23	919	941	918	941	0.86
14	22	0.0012	0.14	13.1	4.6	2	23	955	976	954	976	0.96
15	22	0.0027	0.32	12.0	0.3	1	23	986	1008	986	1008	0.98
16	22	0.67	81	4.5	2.9	2	23	1016	1037	1015	1037	0.96
17	22	0.0027	0.33	12.0	0.1	2	23	1112	1134	1112	1134	0.97
18	22	0.14	16	6.7	1.3	1	23	1138	1160	1138	1160	0.97
19	22	0.07	8.4	7.6	0.1	2	23	1172	1193	1171	1193	0.95
20	22	0.008	0.97	10.5	0.0	1	23	1201	1224	1201	1224	0.96
21	22	0.56	67	4.7	0.2	1	23	1231	1255	1231	1255	0.94
22	22	6.7	8e+02	1.3	3.4	1	22	1282	1303	1282	1305	0.87

Sequence Information

Coding Sequence: ATGACGttaggtacattattatacctgTGCAGGCGGGCGAGGCGGCGCGCGTACGACCGAACCGGTCCGCCGTACAAGACGACCTGTGTGcgcggcggtggcggtgggGGCAGCACGCCACGCCCGGGCCGCTGGGTGACCGTCCAATCGGCTGGACCCGGGGCACCAGCATCCAATCCTCCGGTCCACCTCGACCGGTGCGCGCACACCACGAGATCCGCAGCGGACGACGACCGCGACGACCGACGTGAACATCGCGCACGGCATTTACCGCCGCGCGTAAGGTCCGTCTCCGTCCGTCCGTCTCTCCCTCTATCtcgaccgccgccgccgacgacGAGGGTGCCGCCGCCGCGTCGTACGCGCGTCTCTCGCGGAGACGTCGCTCGCTCACACACCGCCGCCGACAGCGAGTCTGCGTGGTTGATGCTGTTCAAAGGTAACAGTAGTCGCCTACAGTTGCTCATCGAAAAGATACAGTCCAATAACAAGGACAACAACGACGAACAAGACATAGAAGAAGCACTGAGTGGCGCGGGCGAGGCGAGCACCGAAGAGGCAGCTTCGTCGTGGAGTTCGGCCGTATCGGAGGACCACACGTCGCCGGACAGCTGCGCCACGAGCAACAGCCGGCCTGGTTCCACGGTCGACCACCGACGCGATCGCCACAGCCGTCCGCCGTCGTACGCAACGGCCGGTGCCGCTGCCGCCGCTGCCGTAGCCGCTGTCACAGCCGCAGCGAACTCCACCGACGCCAACCCATACGCATGCCAATACTGCGACAAGACGTTTCCCCGAGGCAGCTATTTGAAAAAACACGAACAGACTCATGGAGAATCAATGCCGTTCAAGTGTCAATTCTGCCGGAGGCTGTTCAAACACAAGCGCAGCCGAGACCGGCACGTGAAATTACACACGGGGGACAAGAAGTACAAGTGTACTCAATGTGACCATGCTTTTTCAAGGAGCGATCACTTGAAGATCCACATGAAAACGCACGACAATCAAAAACCGTTCCAGTGTACGGTCTGCAACAGAGGTTACAGTACGGCAGCCGCGCTCACGTCACACATGCAGAACCATCACAAACGGGCTGCGGAACGCGCAAATTCGCCGCAGATATCCGGTCCCTCGTACAAGTGTCTGCAGTGCACGCAGATATTCCGCAAACCGGACGAGCTTCAGAATCACACTGCGACGCATCATCTCGGCGAGCAACTGTCGTCCAACTCCCGAAGCTCGAAACGTTCGACGCCGCCGAAAACGCCCAACCAGTACATTTGCATGTACTGCACCAAAGAAGTGTCCAGCATGGACGCGCTGCAACAACACTTCCAGACCAAACACTCCGCGATTGTCAACGGCAAGCCGCAAGAGGACGTCTTCTCGGCCCTACCGCCGGCGGCCGCGTTCCCGTGGCTCAACTTTGCCGACTCACCGGCCCTGGCTCTGCCTCCGTACTCGTGCCGGTTGTGCATGAGTCAATTCCCGTCCGTCACTTCGTTACAAAAACACTTTACGACCGCTCACTATCTGAGTTCCGTCCTTAACAACAACATACAGAAcaccaacaacaacaacaacaacaacaacagcaacagcaacaacaacaacaccaACGGCTGCAAAGGCGGAACCGGTGCGATGCCGTTGTACAACTGGCCGGTAATGGCCGGCGCAAACGGATACCATCATCACAACCACCACCAACCGCATTCGACGTCGGGCGGTGGTCTGTTGCCCGAGGAAACCGTTCAGACGGGTCCCACAGACCTGTCGCTCTCGTCGTCGAAACACGGCGGCGGCAAGCACCATCACTCGTCGTCGTCGGGTAAGCACAAGTCGGCCGACGACCAACGGCATCACGCGACTAGCAAAAAGTCCCGTTCGTCGCCCAGTCGCGACTCGCCGGCGGCCGACCAGCGTCACATAAAACAGGAACGCCACAACGCTTACGACGGCAAACACCAGCAACCGCAGCTGCTCCCGACTCGACCGTTATCGCAGATCTCCGGTGTTCCcggcaacaacaacaataacaacaacaacaacaacatcaTTCACgccaacaacaacaaaatccAACTGCCGTGTCCGCACTGCCATCTGACGTTCGCGCACTTCGAAGACTACCAGCAGCACGTTATTGGCCACTTTCTCATGGCCGCCGCCGAGTACTCGTGCCAGGAGTGTTCCACTTCGTTCGCCACGTCCGAACACGTGCAGAAACATTTGATGGAAACGCATGCGCAGAACTTTTACCGGTGCATGCTGTGCAAAGAAGTGTTCCCGACCAAGTCGGCCCTGAAGGTGCACTTCAGCATGAACCACGGCAGCGAACACCGTATGTTTCGCTGCAACAACTGCACGGGACTGTCCCGGCCGCTGTTCCAGACGGAAATCGAGTTCATCGATCACCTGCGCAACGCCCATTACTCCGCGAGATCGCCACCTCCGGTCCAACCGAACCTGATGCTTAGGTGTTTGGTGTGTCACGCTACGTTTAACACGCAGTCCGATATGGAACAACATTTAGCTAGTCACTCCAAACAATTTCAATGCCAATTTTGTTCGGAAGCGTTCCACATCGAGTTCTTGTTGGACAGGCATATACAAACGCATCACAGTTCGAGCATTTTAAGTCACCTCAACCGGAACCACAGGGAATCGCCAAATTCCATGTGTACGTCGCCCACGTACATTTCCAGGACGGTGGACGGCGGTAAGCATCCGACGGAAAACGGCACAAACGCATGTGATATTTGCGAGAAAAATGATTTTCGAAACGAATTGGATTTGATCGCCCACAAAAGAACGATGCACCAGGTGAAACCTACAAATCTTTCGACAAAAGTGAGCTTACATTGCGCATATTGTAACGAAAACTGCAAATCGAGAACAGAGTTGGAAAACCACATGAAGACGCATTCACAACACGGTTCGAACGTCGGAAAACACAAGTGCAACATTTGCGACGAAATTTATCAGTCCGCGATCAGCTTAGCTGAACATAAACTCACTCATTGCAAGGTAGCCACGAGTACCGTGTGTAGTCACTGCAAAATGATTATTGACAACGAAGATCAGTTCCATCAACACCTCTTGAAGCACTGCAATCCGGCCAACTCGAACGGCGGCCAAGTGGCATTCCCCACGTCGTGCATAATATGCAGGCAAACGCTCGTCTCAGACATCGAAGTGAAGGTGCACGTGCACTACCACCTGTCCCGGCTCAAAGAATCTCCGGCCGTGTGCGGCAACTGCAACCGGTACAAGCGGTCAGCGTCGTCGCCGTGTGCCGGCTGCAACCCGGCAAGAAACAGTGCGGCGGAACGATGTCCAGACTGCGGTGCGGCGTTCGACGCTTTCGGCGCGCTGCAACACCACCTGACCACCGTCCACAGGAAACCGTTTCACTGTTTCAAGTGCAAGATCGGGTTCGAGTCGCAACAGGAAGCCACCATCCATTTGGGCACGCACCTGGCCACGCTCAACGGTTCCGTGGATGGCATCGAGTGCGGGCTGTGCCCGTGCGTGCTGCCCACGGCTAACAGTCTCCAGACGCACCTGATCGAGCACACGTTCGCCGGCTGCAAGGCGTTCACGTGCTACCTGTGTTCGGCCATATTCACCGCGCCCACCGGTCTCCAGGCGCACATGACCGTTGACCACTCGGCCGAAACGCCGCCGTACGACTGCCCCAGGCCCGGGTGCCAGGCCAAGTTCTTCTTCACCGCCGAGCTTGACAGGCACACGCTCGAGCATCAGGGACAAGACGTCCTGGCCAACATGAATTTTTACAAGTATCAAAACAAGCTTATGTCCATTTGCGAAAAACTGTCGTTCAAGTGTGCCGAGTGCTATCAGAGCTTCTTGACACAAGCCGACTTACAGTGTCACGTATACGACCACCATCGGCAGCAGAAAGACGCACCGCCGCCGGAACCGATAGACGTCAAACATGAAATGAGCGGTGTTAACGGTAACGCGGAAACGCGACCTTTAGATGGATGCGAACGGGCCGAGAATCCGATTAAAGTGGAGGAAGACGGTGAAGAGGTGAGTGTGAAAACGGAACACCGCGAAagagacgacgacgacgacgaagaGATGATTGACGTGGGAGAGAATAACCGCGATGAGCTGAAGTCGGGTGAAGACGAAAACGATGCGGATATACGTTGA
Protein Sequence: MTLGTLLYLCRRARRRAYDRTGPPYKTTCVRGGGGGGSTPRPGRWVTVQSAGPGAPASNPPVHLDRCAHTTRSAADDDRDDRREHRARHLPPRVRSVSVRPSLPLSRPPPPTTRVPPPRRTRVSRGDVARSHTAADSESAWLMLFKGNSSRLQLLIEKIQSNNKDNNDEQDIEEALSGAGEASTEEAASSWSSAVSEDHTSPDSCATSNSRPGSTVDHRRDRHSRPPSYATAGAAAAAAVAAVTAAANSTDANPYACQYCDKTFPRGSYLKKHEQTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSKRSTPPKTPNQYICMYCTKEVSSMDALQQHFQTKHSAIVNGKPQEDVFSALPPAAAFPWLNFADSPALALPPYSCRLCMSQFPSVTSLQKHFTTAHYLSSVLNNNIQNTNNNNNNNNSNSNNNNTNGCKGGTGAMPLYNWPVMAGANGYHHHNHHQPHSTSGGGLLPEETVQTGPTDLSLSSSKHGGGKHHHSSSSGKHKSADDQRHHATSKKSRSSPSRDSPAADQRHIKQERHNAYDGKHQQPQLLPTRPLSQISGVPGNNNNNNNNNNIIHANNNKIQLPCPHCHLTFAHFEDYQQHVIGHFLMAAAEYSCQECSTSFATSEHVQKHLMETHAQNFYRCMLCKEVFPTKSALKVHFSMNHGSEHRMFRCNNCTGLSRPLFQTEIEFIDHLRNAHYSARSPPPVQPNLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSSILSHLNRNHRESPNSMCTSPTYISRTVDGGKHPTENGTNACDICEKNDFRNELDLIAHKRTMHQVKPTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEDQFHQHLLKHCNPANSNGGQVAFPTSCIICRQTLVSDIEVKVHVHYHLSRLKESPAVCGNCNRYKRSASSPCAGCNPARNSAAERCPDCGAAFDAFGALQHHLTTVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGIECGLCPCVLPTANSLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMTVDHSAETPPYDCPRPGCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSICEKLSFKCAECYQSFLTQADLQCHVYDHHRQQKDAPPPEPIDVKHEMSGVNGNAETRPLDGCERAENPIKVEEDGEEVSVKTEHRERDDDDDEEMIDVGENNRDELKSGEDENDADIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00469118;
90% Identity: iTF_01304369; iTF_01305873; iTF_00973245;
80% Identity: -