Dpla012599.1
Basic Information
- Insect
- Drepanosiphum platanoidis
- Gene Symbol
- L
- Assembly
- GCA_948098885.1
- Location
- OX402539.1:11739677-11763498[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.7e-06 0.00021 21.3 1.2 1 23 114 136 114 136 0.98 2 22 1.4 1.1e+02 3.3 7.0 1 23 142 164 142 164 0.97 3 22 5.9e-07 4.7e-05 23.4 5.6 1 23 170 192 170 192 0.99 4 22 7.4e-06 0.00059 20.0 0.9 1 23 198 220 198 221 0.96 5 22 0.00011 0.0088 16.3 2.0 1 23 238 260 238 261 0.96 6 22 0.016 1.3 9.4 0.4 1 23 285 308 285 308 0.97 7 22 3.9 3.1e+02 1.9 0.8 1 23 348 371 348 371 0.93 8 22 0.0035 0.28 11.5 2.1 2 23 549 570 548 570 0.94 9 22 0.00012 0.0096 16.1 0.9 1 23 578 601 578 601 0.95 10 22 0.00028 0.022 15.0 0.4 1 23 606 629 606 629 0.92 11 22 0.00054 0.043 14.1 0.8 2 23 691 712 690 712 0.96 12 22 0.068 5.5 7.5 3.6 1 23 716 738 716 739 0.96 13 22 1.2 96 3.6 0.4 3 23 779 801 778 801 0.86 14 22 0.009 0.72 10.2 4.9 2 23 815 836 814 836 0.96 15 22 0.0023 0.18 12.1 0.3 1 23 846 868 846 868 0.98 16 22 0.19 15 6.1 1.5 2 23 876 897 875 897 0.97 17 22 2.8e-05 0.0022 18.1 0.6 2 23 974 996 974 996 0.97 18 22 0.19 16 6.0 1.5 1 23 1000 1022 1000 1022 0.97 19 22 0.084 6.7 7.2 0.1 2 23 1034 1055 1033 1055 0.95 20 22 0.0067 0.54 10.6 0.0 1 23 1063 1086 1063 1086 0.96 21 22 0.42 33 5.0 0.1 1 23 1093 1117 1093 1117 0.95 22 22 0.45 36 4.9 2.1 1 19 1144 1162 1144 1167 0.85
Sequence Information
- Coding Sequence
- ATGCTCTTCAAAGGCAACAGCAGTCGGCTCCAGTTGCTCATCGAGAAAATTCAGTCCAACAACAAGGACAACAACGACGAGCACGACATCGAAGAAGCGCTGAGCGGCGCGGGCGAGGTGAGCACCGAAGAGGCGGCCTCGTCGTGGAGCTCGGCCGTGTCGGAGGACCACACGTCGCCGGACAGCTGCGCCACGAGCAACAGCCGTCCCGGTTCCACGGTCGACCACCACCGCGATCACCACCATCAGCGCCACCACAGCCGTCCGTCCGCGTACGCCACGGCCGCAGCCGCAGCCGCAGCCGCAGCCGCCGCGGCCAACGCCAACGAAGCCAACCCGTACGCGTGCCAATACTGCGACAAGACGTTTCCCCGGGGCAGCTACCTCAAGAAACACGAACAGACTCATGGAGAATCAATGCCGTTCAAGTGTCAATTCTGCCGGAGGCTGTTCAAACACAAGCGCAGCCGAGACCGACACGTGAAATTACACACGGGGGACAAGAAGTACAAGTGTACTCAGTGCGACCATGCTTTTTCAAGGAGTGATCACTTAAAGATTCACATGAAAACGCACGACAATCAAAAACCGTTCCAGTGCACGGTGTGCAACAGGGGCTACAGCACGGCGGCCGCGCTCACGTCGCACATGCAAAACCATCACAAGCGCGCCGCGGAACGGGCCAACTCGCCGCAGATCTCCGGCCCGTCGTACAAGTGTTTGCAGTGCACTCAGATATTCCGCAAGCCCGACGAGTTGCAGAACCACACTGCGACGCATCATCTCGGCGAGCAACTCTCGTCCAACTCCCGAAGCTCAAAACGTTCGACGCCGCCCAAAACGCCGAACCAATACATATGCATGTATTGCACCAAAGAGGTGCCCAGCATGGACGCTCTGCAGCAGCATTTTCAGACCAAACACTCCGCGATCGTCAACGGCAAGCCGCCGCAGGACGACGTGTTCGCGGCCATGCCGCCGGCGGCCGCCGCGTTCCCGTGGCTCAACTTTGCCGACTCGCCCGCGCTCGCGCTGCCACCGTACTCGTGCCGGCTGTGCATGAGCCAGTTCCCGTCCGTCACCCTGCTCCAGAAACACTTTACGACCGCCCACTATCTCAACTCCGTCCTcaacaacaacatccagagcaacaacaacaacaacaccaacaccaacaacaacaataacaacaacaacaacaacggttgcaagggcggcCCGGTGCCGCTGTTCAATTGGCCTGTCGTGGCTGCTCCGAACGGATATCACCATCATCCGGCTGCCGGCGGCGGCTTCTTGCCCGACGACAACGGCGTGCAGACCGGCCCCACCGATTTGTCCGTGTCCTCGTCCAAACACGGCAAACATCACTCGGCCTCGGGCAAACACAAGTCCGCGACCGCGGCCTCGGCGGCCGACGACCATCAGCGCAGGAGCGGCAAAAAGTTTCGCTCGTCGCCCGTCGTCGGCGAGTCGACCTCCGCCGCGGTCCTTCCGCAACATCATCCGGCCGACGCGCGTCTCGTAAAACAAGAACGCGGCGGCCACAACGCGTACGACAAACAGCACCGGCCGGCCGCGGCGCCGCCGCCGCCGCAGCCGCAGCAGCACGCGTCCGTCCCGGGCGGCGGCAAGATCCAACTGCCGTGCCCGCACTGCCACCTCACGTTCGCGCACTTCGAGGACTACCAGCAGCACGTCATCGGGCACTTCCTGTCGGCCGCCGCCGAGTACGCGTGCCAGGAGTGTTCCACGTCGTTCGCCACGTCCGAGCACGTGCAACGGCACCTGATGGAGACGCACGCGCAGAACTTCTACCGGTGCATGCTGTGCAAGGAGGTGTTCCCCACCAAGTCCGCGCTCAAGGTGCACTTCGGCATGAACCACGGCAGCGAGCGCCGCATGTTCCGGTGCAACAACTGCACCGGGCTGTCCAGGCCGCTGTTCCAGACCGAGATCGAGTTCATCGACCACCTCAGGAACACCCACTATTCCGCGCGATCGCCCCCGCCGCCGCCACAGCAGCAGCAGCCCGCGTCCCAGGTGGCCCAGACCGCGAACCTGATGCTTAGGTGTCTGGTGTGCCACGCCACGTTCAACACGCAATCCGACATGGAACAACATTTAGCTAGTCATTCCAAACAGTTCCAATGCCAGTTCTGTTCGGAAGCGTTTCACATCGAGTTCCTGTTGGACAGACACATACAGACGCACCACAATTCCACGATTTTGAGCCATCTCAATCGGAACCATCACAGGGACTCTCCGAGCTCCATGTGCACGTCGCCGCCGGGCTTCAACAGTAAACATCCGATGGAAAACGGCACGAACGCGTGCGACATATGCGAAAAGAACGATTTCAGAAACGAACTGGACCTGATGACGCACAAAAGGACGATGCACCAGGCCAAGCCTACCAATCTTTCGACCAAAGTGAGCTTGCATTGCGCGTATTGCAACGAAAACTGCAAATCGCGAACCGAGTTGGAAAACCACACCAAGACGCATTCGCAACACGGCTCGAATGTCGGGAAACACAAGTGCAACATTTGCGACGAGATCTACCAGTCGGCGATCAGCCTGGCCGAGCACAAACTCACCCACTGCAAGGTGGCGACGAGTACCGTGTGCAGCCACTGCAAAATGATCATCGACAACGAGGATCAATTCTATCAGCACCTCCAGAAACACTGCAACCCGGTGAACGTGAACGGCGGCGGCCAAGTGGCGTTCCCCACGTCCTGCATCATATGCAGACAGACGCTGGTCTCGGACATCGAGGTCAAGGTGCACGTGCACTATCATCTGTCGCGGCTCAAGGAGCCGCCGGCCGTGTGCAACAACTGCAACAGGTACAAGTCGTCCGCGTCGTCGCCGTGCGCCGGTTGCAACCCGGCCAGGAACAACGCCGCGGCCGAACGGTGTCCCGACTGCGGCACGGCGTTCGAAACGTTCGGCTCGCTGCAGCACCATCTCACGACCGTCCACAGGAAACCGTTTCACTGTTTCAAATGCAAGATCGGATTCGAATCGCAACAAGAAGCCACGCTCCATCTGGGCACTCACCTGGCCACGTTGAACGGCTCCGTGGACGGTATCGAGTGCGGCCTGTGCCCGTGCGTGCTGCCCTCGGCCAACAGCCTGCAGACGCACCTGATCGAGCACACGTTCGCCGGCTGCAAGGCGTTCACGTGCTACTTGTGCTCGGCCATATTCACAGCCCCTACCGGCCTCCAGGCTCACATGACGGTCGACCATTCCAGCGAGACGCCGCCGTACGACTGTCCCAGGCCCGGTTGTCAGGCGCGGTTTTTCTTCACCGCCGAGCTGGACCGGCACACGTTGGAACACCAGGGGCAGGACGTGCTCGCCAACATGAACTTCTACAAGTACCAGAACAAGCTGATGTCTATCTGCGAGAAGATGTCGTTCAAGTGCCCGGAGTGCTACCAGAGTTTCCTGACGCAGGCCGACCTGCAGTGTCACGTGTACGACCGGCACCAGCCGAGAGAGGCGCCCGGGCCGGAGATCAAAGACGTGAAACAGGAAGAGGCGGCCGAGGCGAACAACGCCGGGGACAAGGACGGCGAGGAGACCGCCGCGGAGAGACCGCCGATAAAGGAGGAGAAACAGGACGAAGTGAACGTCAAGACGGAACGACAGGACGCGAAGGACGACGACGGCGACGACGACGACGACGGGTGCCAAGTGGACGACGACCAGGACCGCGAGGACAACGGCGGCGGCGGCGTTGGCGAGGACGAGGAGCTGATCGACGTGGGCGAGAACAATCGCGACGACGTGAAGCCGCGCGCCGCGGCCGACGACGACTCGGACGCCCGTCGCTGA
- Protein Sequence
- MLFKGNSSRLQLLIEKIQSNNKDNNDEHDIEEALSGAGEVSTEEAASSWSSAVSEDHTSPDSCATSNSRPGSTVDHHRDHHHQRHHSRPSAYATAAAAAAAAAAAANANEANPYACQYCDKTFPRGSYLKKHEQTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSKRSTPPKTPNQYICMYCTKEVPSMDALQQHFQTKHSAIVNGKPPQDDVFAAMPPAAAAFPWLNFADSPALALPPYSCRLCMSQFPSVTLLQKHFTTAHYLNSVLNNNIQSNNNNNTNTNNNNNNNNNNGCKGGPVPLFNWPVVAAPNGYHHHPAAGGGFLPDDNGVQTGPTDLSVSSSKHGKHHSASGKHKSATAASAADDHQRRSGKKFRSSPVVGESTSAAVLPQHHPADARLVKQERGGHNAYDKQHRPAAAPPPPQPQQHASVPGGGKIQLPCPHCHLTFAHFEDYQQHVIGHFLSAAAEYACQECSTSFATSEHVQRHLMETHAQNFYRCMLCKEVFPTKSALKVHFGMNHGSERRMFRCNNCTGLSRPLFQTEIEFIDHLRNTHYSARSPPPPPQQQQPASQVAQTANLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHNSTILSHLNRNHHRDSPSSMCTSPPGFNSKHPMENGTNACDICEKNDFRNELDLMTHKRTMHQAKPTNLSTKVSLHCAYCNENCKSRTELENHTKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEDQFYQHLQKHCNPVNVNGGGQVAFPTSCIICRQTLVSDIEVKVHVHYHLSRLKEPPAVCNNCNRYKSSASSPCAGCNPARNNAAAERCPDCGTAFETFGSLQHHLTTVHRKPFHCFKCKIGFESQQEATLHLGTHLATLNGSVDGIECGLCPCVLPSANSLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMTVDHSSETPPYDCPRPGCQARFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSICEKMSFKCPECYQSFLTQADLQCHVYDRHQPREAPGPEIKDVKQEEAAEANNAGDKDGEETAAERPPIKEEKQDEVNVKTERQDAKDDDGDDDDDGCQVDDDQDREDNGGGGVGEDEELIDVGENNRDDVKPRAAADDDSDARR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170084; iTF_01305039; iTF_01304369; iTF_01305873;
- 90% Identity
- -
- 80% Identity
- -