Msac008155.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- L
- Assembly
- GCA_002803265.2
- Location
- NW:133570-251832[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 2.3e-06 0.00017 21.3 1.2 1 23 167 189 167 189 0.98 2 22 1.2 89 3.3 7.0 1 23 195 217 195 217 0.97 3 22 5e-07 3.7e-05 23.4 5.6 1 23 223 245 223 245 0.99 4 22 6.3e-06 0.00046 19.9 0.9 1 23 251 273 251 274 0.96 5 22 9.4e-05 0.0069 16.2 2.0 1 23 291 313 291 314 0.96 6 22 0.0051 0.37 10.8 0.7 1 23 338 361 338 361 0.97 7 22 2.2 1.6e+02 2.5 1.0 1 23 399 422 399 422 0.94 8 22 0.003 0.22 11.5 2.1 2 23 617 638 616 638 0.94 9 22 0.0001 0.0075 16.1 1.5 1 23 646 669 646 669 0.96 10 22 0.00012 0.0085 15.9 0.6 1 23 674 697 674 697 0.95 11 22 0.00046 0.034 14.0 0.8 2 23 747 768 746 768 0.96 12 22 0.058 4.2 7.4 3.6 1 23 772 794 772 795 0.96 13 22 1.1 82 3.4 0.3 3 23 839 861 839 861 0.85 14 22 0.00085 0.062 13.2 4.6 2 23 875 896 874 896 0.96 15 22 0.0019 0.14 12.1 0.3 1 23 906 928 906 928 0.98 16 22 0.39 28 4.8 3.3 2 23 936 957 935 957 0.97 17 22 0.01 0.73 9.8 0.0 2 23 1032 1054 1032 1054 0.91 18 22 0.097 7.1 6.7 1.3 1 23 1058 1080 1058 1080 0.97 19 22 0.057 4.2 7.5 0.1 2 23 1092 1113 1091 1113 0.95 20 22 0.0058 0.42 10.6 0.0 1 23 1121 1144 1121 1144 0.96 21 22 0.4 29 4.8 0.2 1 23 1151 1175 1151 1175 0.94 22 22 4.8 3.5e+02 1.4 3.4 1 22 1202 1223 1202 1225 0.87
Sequence Information
- Coding Sequence
- ATGTCCAGGAGGAAACAGGCTACACCTCGTTCGCTCAGACatggaAATCTTGACGCGGAAGATGTTCTCGACGACGAAGACCTCATGCCACCGTTATCTCCTACAGGATCTGGAAGTACGAAAAGCGACGAAGACGAAGGAGATGAGGACGAAGAGGAAGAGTGCACCGTCGATGATGAAGATGATGAcgaagacgacgacgacgacatgCAGTCGGTCAGTTCTACCGAGGGATCAAATCACAGTCTGCTTTccgAAGCACTGAGTGGTGCGGGCGAGGCGAGCACCGAAGAGGCAGCTTCGTCGTGGAGTTCGGCCGTATCGGAGGACCACACGTCGCCGGACAGCTGCGCCACGAGCAACAGCCGGCCCGGTTCCACGGTCGACCACCGACGCGATCGCCACAGCCGTCCGCCGTCGTACGCAACGGCCGGTGCCGCAGCCGCAGCCGCCGTCGCCGCTGTCACAGCCGCAGCGAACTCCACCGACGCCAACCCATACGCATGCCAATACTGCGACAAGACGTTTCCCCGAGGCAGCTACCTGAAAAAACACGAACAGACTCATGGAGAATCAATGCCGTTCAAGTGTCAATTCTGCCGGAGGCTGTTCAAACACAAGCGCAGCCGAGACCGGCACGTGAAATTACACACGGGCGACAAGAAGTACAAGTGTACTCAATGCGACCATGCTTTTTCAAGGAGCGATCACCTGAAGATCCACATGAAAACGCACGACAATCAAAAACCGTTCCAGTGTACGGTTTGCAACAGAGGTTACAGCACGGCGGCCGCGCTCACGTCACACATGCAGAACCATCACAAACGGGCTGCGGAACGGGCGAACTCGCCACAGATATCCGGCCCATCGTACAAGTGTCTGCAATGCACGCAGATATTCCGTAAGCCCGACGAGCTTCAGAATCACACTGCGACGCATCATCTCGGCGAGCAACTGTCGTCCAACTCCCGGAGCTCGAAACGTTCGACACCGCCGAAAACTCCCAACCAGTACATTTGCATGTACTGCACCAAAGAAGTGTCCAGCATGGACGCCCTGCAACAACACTTCCAGACCAAACATTCTGCGATCGTCAACGGCAAGCCACCAGAGGACATCTTCTCGGCCGTACCGCCGGCGGCCGCGTTCCCGTGGCTCAATTTTGCCGACTCGCCGGCCCTGTCTCTGCCTCCGTACTCGTGCCGGTTGTGCATGAGCCAATTCCCGTCCGTCACTTCGTTACAGAAACACTTCACGACCGCCCACTATCTGAGTTCCGTCCTCAACAACAACATACAGAACACCAACAACAACGACAATGACAACAACGGTAACAACACCAACGGCTACAAAGGCGGAAGTGGCGCGATGCCTTTGTACAATTGGCCGGTAATATCCGGAATGAACGGATACCATCACCAAAACAATCACCACCATAACCGGCACTTGACGTCGGGTGGCGGCGGTCTGTTGCCCGAAGAAACCGTTCAGACGGGTCCCACAGACTTGTCGCTGTCGTCGTCCAAGCACGGAAGCAGCAAGCATCATCACTCCTCGTCGGGTAAGCACAAGTCAACTGACGACCAGCGAAACCACGCGACCAGCAAAAAGTCTCGTTCGTCGCCCGGCCGCGATCCGTCGGCGGCCGACCAACGTCACATTAAACAAGAACGTCAAAACGTTTACGATGGCAAACATCAGCATCCGCAGCCGATCGCGGCTCGACCGTCATCGCAGATCGGCGTGCCCAGCATCAACGACAACAACaccaaaaacaacaataataacaataacaataacaacaacaataacaacagcATTCACGCCAACAACAACAAGATGCAATTGCCATGTCCGCACTGCCATCTGACGTTCGCGCACTTCGAAGACTATCAGCAGCACGTCATCGGTCACTTCCTCACGGCCGCCGCCGAATACTCGTGCCAGGAGTGCTCCACTTCGTTCGCCACATCCGAACACGTACAGAAACATCTCATGGAAACGCACGCGCAGAACTTTTACCGGTGCATGCTGTGCAAAGAAGTGTTCCCCACCAAGTCGGCCCTGAAGGTGCACTTCAGCATGAACCACGGCAGCGAACACCGCATGTTTCGCTGCAACAACTGCACGGGACTGTCCCGGCCGCTGTTCCAAACGGAAATCGAGTTCATCGATCATCTGCGTAACGCCCATTACTCAGCGAGGTCGCCACCGCCGGTCCAAGCGAACTTGATGCTTAGGTGTTTGGTATGCCACGCTACGTTCAACACGCAATCCGATATGGAACAACATTTAGCTAGTCACTCCAAACAATTCCAATGTCAATTTTGTTCGGAAGCGTTCCACATCGAGTTCTTGTTGGACAGACACATACAAACGCATCACAGTTCGAGCattttaagtcACCTCAACCGGAATCACAGGGAATCGCCAAATTCCATGTGTACGTCGCCTACGTACATTTCCAGGACGACGGAAGGCGGTAAGCATCCGACGGAAAACGGCACAAACGGTTGTGATATATGtgagaaaaatgattttcgaAACGAATTGGACTTGATTGCACACAAAAGAACGATGCACCAGGTGAAGCCTACAAATCTTTCAACAAAAGTAAGCTTACATTGCGCGTATTGTAACGAAAACTGCAAATCGAGAACAGAGTTAGAGAACCACATGAAGACGCATTCACAACAAGGTTCGAATGTTGGAAAACACAAGTGCAACATTTGCGACGAAATTTATCAGTCCGCGATCAGCTTGGCCGAACATAAACTCACTCATTGCAAGGTAGCCACGAGTACCGTGTGCAGTCACTGCAAAATGATTATCGACAATGAGGATCAGTTCCATCAACACCTCCAGAAGCACTGCAATCCGGTGAACGCGAACGGCGGCCAAGTGGCGTTCCCCACGTCGTGCATCATATGCAGGCAAACGCTCGTTTCAGACATCGAAGTGAAGGTGCACGTGCACTATCACCTGTCCCGGCTCAAAGAATCTCCGGCCGTGTGCGGCAACTGCAACCGGTACAAGCGGTCAGCGTCTTCTCCGTGCGCCGGCTGCAACCCGGCCAGAAACAGTGCGGCGGAACGATGTCCTGACTGCGGTGCGGCGTTCGACGCTTTCGGCGCGCTGCAACACCACCTGACCGCAGTCCACAGAAAACCGTTTCACTGTTTCAAGTGCAAGATCGGATTCGAGTCGCAACAGGAAGCCACGATCCACTTGGGCACGCACCTGGCTACGCTCAACGGTTCCGTGGATGGTATCGAGTGCGGCCTTTGCCCGTGCGTGCTGCCCACAGCCAACAGTCTCCAGTCGCACCTGATCGAGCACACGTTCGCCGGCTGCAAAGCGTTCACGTGCTACCTGTGCTCGGCCATATTCACCGCGCCCACAGGACTCCAGGCGCACATGACCGTCGACCACTCGACCGAAACGCCGCCGTACGACTGCCCCAGACCCGGATGTCAGGCCAAGTTCTTCTTCACCGCCGAGCTGGACCGGCACACGCTCGAGCACCAGGGACAGGACGTCCTGGCCAACatGAATTTCTACAAGTACCAAAACAAGCTTATGTCCATCTGCGAAAAACTATCGTTCAAGTGTGCCGAGTGCTATCAGAGTTTCTTGACACAGGCCGACTTGCAGTGTCACGTGTACGACCACCATCGGCAGCAGAAGGACGCGCCGCCGCCGGGATCGGAAACGATAGACCTCAAACAGGAAATGAGCGGATGCGCGGTTAACGGTAACGCGGAAACGCGGCCTTTGGACGAATGCGAACGGGACGCGAATCCGATCAAAGAGGAGGAAGACGGGGACGAGGTGAGCGTGAAAACGGAACACCGCGAAAGAGATGACGAGGACGAAGAGATGATTGACGTGGTAGAGAACAACCGCGATGAGCTGAAGTCGGGTGAAGACGAAGACGACGTGGATATGCATTGA
- Protein Sequence
- MSRRKQATPRSLRHGNLDAEDVLDDEDLMPPLSPTGSGSTKSDEDEGDEDEEEECTVDDEDDDEDDDDDMQSVSSTEGSNHSLLSEALSGAGEASTEEAASSWSSAVSEDHTSPDSCATSNSRPGSTVDHRRDRHSRPPSYATAGAAAAAAVAAVTAAANSTDANPYACQYCDKTFPRGSYLKKHEQTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSKRSTPPKTPNQYICMYCTKEVSSMDALQQHFQTKHSAIVNGKPPEDIFSAVPPAAAFPWLNFADSPALSLPPYSCRLCMSQFPSVTSLQKHFTTAHYLSSVLNNNIQNTNNNDNDNNGNNTNGYKGGSGAMPLYNWPVISGMNGYHHQNNHHHNRHLTSGGGGLLPEETVQTGPTDLSLSSSKHGSSKHHHSSSGKHKSTDDQRNHATSKKSRSSPGRDPSAADQRHIKQERQNVYDGKHQHPQPIAARPSSQIGVPSINDNNTKNNNNNNNNNNNNNNSIHANNNKMQLPCPHCHLTFAHFEDYQQHVIGHFLTAAAEYSCQECSTSFATSEHVQKHLMETHAQNFYRCMLCKEVFPTKSALKVHFSMNHGSEHRMFRCNNCTGLSRPLFQTEIEFIDHLRNAHYSARSPPPVQANLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSSILSHLNRNHRESPNSMCTSPTYISRTTEGGKHPTENGTNGCDICEKNDFRNELDLIAHKRTMHQVKPTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQQGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEDQFHQHLQKHCNPVNANGGQVAFPTSCIICRQTLVSDIEVKVHVHYHLSRLKESPAVCGNCNRYKRSASSPCAGCNPARNSAAERCPDCGAAFDAFGALQHHLTAVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGIECGLCPCVLPTANSLQSHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMTVDHSTETPPYDCPRPGCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSICEKLSFKCAECYQSFLTQADLQCHVYDHHRQQKDAPPPGSETIDLKQEMSGCAVNGNAETRPLDECERDANPIKEEEDGDEVSVKTEHRERDDEDEEMIDVVENNRDELKSGEDEDDVDMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00136337;
- 90% Identity
- iTF_01305039;
- 80% Identity
- -