Basic Information

Insect: Rhopalosiphum padi
Gene Symbol: L
Assembly: None
Location: scf7180000007977.878051:20528-53186[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 3.1e-06 0.00039 21.2 1.2 1 23 244 266 244 266 0.98

2 22 1.7 2.1e+02 3.2 7.0 1 23 272 294 272 294 0.97

3 22 6.9e-07 8.7e-05 23.3 5.6 1 23 300 322 300 322 0.99

4 22 8.6e-06 0.0011 19.8 0.9 1 23 328 350 328 351 0.96

5 22 0.00013 0.016 16.1 2.0 1 23 368 390 368 391 0.96

6 22 0.007 0.88 10.7 0.7 1 23 415 438 415 438 0.97

7 22 3 3.8e+02 2.4 1.0 1 23 476 499 476 499 0.94

8 22 0.019 2.4 9.3 0.7 2 23 685 706 684 706 0.93

9 22 0.00014 0.018 16.0 1.5 1 23 714 737 714 737 0.96

10 22 0.00016 0.02 15.9 0.6 1 23 742 765 742 765 0.95

11 22 0.00063 0.08 14.0 0.8 2 23 815 836 814 836 0.96

12 22 0.08 10 7.4 3.6 1 23 840 862 840 863 0.96

13 22 1 1.3e+02 3.9 0.2 3 23 907 929 906 929 0.86

14 22 0.0012 0.15 13.1 4.6 2 23 943 964 942 964 0.96

15 22 0.0026 0.33 12.0 0.3 1 23 974 996 974 996 0.98

16 22 0.66 83 4.5 2.9 2 23 1004 1025 1003 1025 0.96

17 22 0.0023 0.29 12.2 0.2 2 23 1100 1122 1100 1122 0.97

18 22 0.13 17 6.7 1.3 1 23 1126 1148 1126 1148 0.97

19 22 0.069 8.6 7.6 0.1 2 23 1160 1181 1159 1181 0.95

20 22 0.0079 0.99 10.5 0.0 1 23 1189 1212 1189 1212 0.96

21 22 0.55 69 4.7 0.2 1 23 1219 1243 1219 1243 0.94

22 22 6.5 8.2e+02 1.3 3.4 1 22 1270 1291 1270 1293 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	3.1e-06	0.00039	21.2	1.2	1	23	244	266	244	266	0.98
2	22	1.7	2.1e+02	3.2	7.0	1	23	272	294	272	294	0.97
3	22	6.9e-07	8.7e-05	23.3	5.6	1	23	300	322	300	322	0.99
4	22	8.6e-06	0.0011	19.8	0.9	1	23	328	350	328	351	0.96
5	22	0.00013	0.016	16.1	2.0	1	23	368	390	368	391	0.96
6	22	0.007	0.88	10.7	0.7	1	23	415	438	415	438	0.97
7	22	3	3.8e+02	2.4	1.0	1	23	476	499	476	499	0.94
8	22	0.019	2.4	9.3	0.7	2	23	685	706	684	706	0.93
9	22	0.00014	0.018	16.0	1.5	1	23	714	737	714	737	0.96
10	22	0.00016	0.02	15.9	0.6	1	23	742	765	742	765	0.95
11	22	0.00063	0.08	14.0	0.8	2	23	815	836	814	836	0.96
12	22	0.08	10	7.4	3.6	1	23	840	862	840	863	0.96
13	22	1	1.3e+02	3.9	0.2	3	23	907	929	906	929	0.86
14	22	0.0012	0.15	13.1	4.6	2	23	943	964	942	964	0.96
15	22	0.0026	0.33	12.0	0.3	1	23	974	996	974	996	0.98
16	22	0.66	83	4.5	2.9	2	23	1004	1025	1003	1025	0.96
17	22	0.0023	0.29	12.2	0.2	2	23	1100	1122	1100	1122	0.97
18	22	0.13	17	6.7	1.3	1	23	1126	1148	1126	1148	0.97
19	22	0.069	8.6	7.6	0.1	2	23	1160	1181	1159	1181	0.95
20	22	0.0079	0.99	10.5	0.0	1	23	1189	1212	1189	1212	0.96
21	22	0.55	69	4.7	0.2	1	23	1219	1243	1219	1243	0.94
22	22	6.5	8.2e+02	1.3	3.4	1	22	1270	1291	1270	1293	0.87

Sequence Information

Coding Sequence: ATGTTGTCTTGCAAGACATGTCATGCTAAGCGGGCGAGGCGGCGCGCGTACGACCGAACCGGTCCGCCGTACAAGACGGCGTGTGTGCGCGGCTGTGGCGGTGGGGGCAGCACGCCCCGCCCGGGCCGCTGGGTGACCGTCCAATCGGCTGGACCCGGGGCACCAGCATCCAATCCTCCGGTCCACCTCGACCGGTGCGCGCACACCACGAGATCCGCAGCGGACGACGACCGCGACGACCGACGCGAACATCGCGCACGGCATTTACCGCCGCGCGTAAGGTCCGTCTCCGTCCGTCCGTCCGTCTCTCCCTCTAACTCGACCGCCGCCGCCGCCGCCGCCGACGACGAGGGTGCCGCCGCCGCGTCGTACGCGCGTCTCTCGCGGAGACTGATGCTGTTCAAAGGTAACAGTAGTCGCCTACAGTTGCTCATCGAAAAGATACAGTCCAACAACAAGGACAACAACGACGAACAAGACATAGAAGAAGCACTGAGTGGCGCGGGCGAGGCGAGCACCGAAGAGGCAGCTTCGTCGTGGAGTTCGGCCGTATCGGAGGACCACACGTCGCCGGACAGCTGCGCCACGAGCAACAGCCGGCCCGGTTCCACGGTCGACCACCGACGCGATCGCCACAGCCGTCCGCCGTCGTACGCAACGGCCGGTGCCGCTGCCGCCGCTGCCGTCGCCGCTGTCACAGCCGCAGCGAACTCCACCGACGCCAACCCATACGCATGCCAATACTGCGACAAGACGTTTCCCCGAGGCAGCTATCTGAAAAAACACGAACAGACTCATGGAGAATCAATGCCGTTCAAGTGTCAATTCTGCCGGAGGCTGTTTAAACACAAGCGCAGCCGAGACCGGCACGTGAAATTACACACGGGGGACAAGAAGTACAAGTGTACTCAATGTGACCATGCTTTTTCAAGGAGCGATCACTTGAAGATCCACATGAAAACGCACGACAATCAAAAACCGTTCCAGTGTACGGTTTGCAACAGAGGTTACAGCACAGCGGCCGCGCTCACGTCGCACATGCAGAACCACCACAAACGGGCTGCGGAACGGGCAAACTCGCCGCAGATATCCGGCCCCTCGTACAAGTGTCTGCAGTGCACGCAGATATTCCGCAAACCCGACGAGCTTCAGAATCACACTGCGACGCATCATCTTGGCGAGCAACTGTCGTCCAACTCCCGGAGCTCGAAACGTTCGACGCCGCCGAAAACGCCCAACCAGTATATTTGCATGTACTGCACCAAAGAAGTGTCCAGCATGGACGCGCTACAACAACACTTCCAGACCAAACACTCCGCGATCGTCAACGGCAAGCCGCAAGAGGACGTCTTCTCGGCCGTACCGCCGGCGGCCGCGTTCCCGTGGCTCAACTTTGCCGACTCGTCGGCCCTTGCCCTGCCACCGTACTCGTGCCGGTTGTGTATGAGCCAATTCCCGTCCGTCACTTCGTTACAAAAACACTTTACGACCGCCCACTATCTGAGTTCCGTCCTCAACAACAACATACAAAACACCAACAACAATAACAACAATAGCAACAGCAACAACAATAATAACACCAACGGCTGCAAAGGCGGAGCCGGTGCGATGCCCTTGTACAACTGGCCGGTAATAACCGGAGCGAACGGATACCATAACCACAACCACCACCAGCGGCACTCCACGTCGGGCGGCGGTCTGTTGCCCGAGGAAACCGTTCAGACGGGTCCCACGGACTTGTCGCTGTCGTCGTCCAAGCACGGTGGCGGCGGTGGCAAGCACCATCACTCGTCGTCGTCGGGCAAGCACAAGTCGGCCGACGACCAGCGGCACCACGCGACCAGCAAAAAGTCCCGTTCGTCGCCCAGCCGCGATCCGTCGGCGACCGACCAGCGGCACATAAAACAGGAACGCCACAACGCTTACGACGGCAAACACCAGCAACCTCAGCCGGCCCCGGCTCGACCGTCATCGCAGATCTCCGGCGTCCCCGGCAACAACAACAACAACAACAACAACATCATTCACGCCAACAACAACAAGATCCAATTGCCGTGTCCGCACTGCCATCTGACGTTCGCGCTCTTCGAAGACTATCAGCAGCACGTCATCGGACACTTTCTCATGGCCGCCGCCGAGTACTCGTGCCAGGAGTGTTCCACTTCGTTCGCCACGTCCGAACACGTGCAGAAACATCTGATGGAAACGCACGCGCAGAACTTTTACCGGTGCATGCTGTGCAAAGAAGTGTTCCCGACCAAGTCGGCCCTGAAGGTGCACTTCAGCATGAACCACGGCAGCGAACACCGAATGTTCCGCTGCAACAACTGCACGGGACTGTCCCGGCCGCTGTTCCAGACGGAAATCGAGTTCATCGATCACCTGCGCAACGCCCATTACTCCGCGAGATCGCCACCGCCGGTCCAACCGAACTTGATGCTTAGGTGTTTGGTATGCCACGCTACGTTCAACACGCAGTCCGATATGGAACAACATTTAGCTAGTCACTCCAAACAATTCCAATGCCAATTTTGTTCGGAAGCGTTCCACATCGAGTTTTTGTTGGACAGACACATACAAACGCATCACAGTTCGAGCATTTTAAGTCACCTCAACCGGAACCACAGGGAATCGCCAAATTCCATGTGTACGTCGCCCACGTACATTTCCAGGACGTCGGACGGCGGTAAGCATCCGACGGAAAACGGCACGAACGCGTGTGATATATGCGAGAAAAATGATTTTAGAAACGAATTGGACTTGATTGCCCACAAAAGAACGATGCACCAGGTGAAACCTACAAATCTTTCTACAAAGGTGAGCTTACATTGCGCATATTGTAACGAAAACTGCAAATCGAGAACAGAGTTGGAGAACCACATGAAGACGCATTCACAACACGGCTCGAACGTCGGAAAACACAAGTGCAACATTTGCGACGAAATTTATCAGTCCGCGATCAGCTTAGCCGAACACAAACTCACTCATTGCAAGGTAGCCACGAGTACCGTGTGTAGTCACTGCAAAATGATTATTGACAACGAGGACCAGTTCCATCAACACCTCCTGAAGCACTGCAATCCGGCGAACGCGAACGGCGGCCAAGTGGCGTTCCCCACGTCGTGCATAATATGCAGGCAAACGCTCGTCTCAGACATCGAAGTGAAGGTGCACGTGCACTATCACCTGTCCCGGCTCAAAGAATCTCCGGCCGTGTGCGGAAACTGCAACCGGTACAAGCGGTCAGCGTCGTCGCCGTGCGCCGGCTGCAACCCGGCCAGAAACAGTGCGGCGGAACGATGTCCCGACTGCGGTGCGGCGTTCGACGCTTTCGGCACGCTGCAACACCACCTGACTACCGTCCACAGGAAACCGTTTCACTGTTTCAAGTGCAAGATCGGTTTCGAGTCGCAACAGGAAGCCACGATCCATTTGGGCACGCACCTGGCCACGCTCAACGGTTCCGTGGACGGCATCGAGTGCGGCCTGTGTCCGTGCGTGCTGCCCACGGCCAACAGTCTCCAGACGCACCTGATCGAGCACACGTTCGCCGGCTGCAAGGCGTTCACGTGCTACCTGTGCTCGGCCATATTCACCGCACCCACCGGTCTCCAGGCGCACATGACCGTCGACCACTCGGCCGAAACGCCGCCGTACGACTGCCCCAGGCCCGGGTGTCAGGCCAAGTTCTTCTTCACCGCCGAGCTGGACCGGCACACGCTCGAGCACCAGGGACAAGACGTCCTGGCCAACATGAATTTCTACAAGTACCAAAACAAGCTTATGTCCATCTGCGAAAAACTGTCGTTCAAGTGCGCCGAGTGCTATCAGAGCTTCTTGACACAAGCCGACTTACAGTGTCACGTGTACGACCACCATCGGCCACAGAAAGACGCACCGCTGCCAGAACCGATAGACGTCAAACAAGAAATGAGCGGTGTTAACGGTAACGCGGAAACACGGCCTTTGGACGGATGCGAACGGTCCGAGAATCCGATCAAAGTGGAGGAAGACGGGGACGAGGTGAGCGTGAAAACGGAACACCGCGAAAGAGACGACGACGACGACGAAGAGATGATTGACGTGGGAGAGAACAACCGCGATGAGCTGAAGTCGGGTGAAGAAGAAGATGACGCGGATATGCATTGA
Protein Sequence: MLSCKTCHAKRARRRAYDRTGPPYKTACVRGCGGGGSTPRPGRWVTVQSAGPGAPASNPPVHLDRCAHTTRSAADDDRDDRREHRARHLPPRVRSVSVRPSVSPSNSTAAAAAADDEGAAAASYARLSRRLMLFKGNSSRLQLLIEKIQSNNKDNNDEQDIEEALSGAGEASTEEAASSWSSAVSEDHTSPDSCATSNSRPGSTVDHRRDRHSRPPSYATAGAAAAAAVAAVTAAANSTDANPYACQYCDKTFPRGSYLKKHEQTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSKRSTPPKTPNQYICMYCTKEVSSMDALQQHFQTKHSAIVNGKPQEDVFSAVPPAAAFPWLNFADSSALALPPYSCRLCMSQFPSVTSLQKHFTTAHYLSSVLNNNIQNTNNNNNNSNSNNNNNTNGCKGGAGAMPLYNWPVITGANGYHNHNHHQRHSTSGGGLLPEETVQTGPTDLSLSSSKHGGGGGKHHHSSSSGKHKSADDQRHHATSKKSRSSPSRDPSATDQRHIKQERHNAYDGKHQQPQPAPARPSSQISGVPGNNNNNNNNIIHANNNKIQLPCPHCHLTFALFEDYQQHVIGHFLMAAAEYSCQECSTSFATSEHVQKHLMETHAQNFYRCMLCKEVFPTKSALKVHFSMNHGSEHRMFRCNNCTGLSRPLFQTEIEFIDHLRNAHYSARSPPPVQPNLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSSILSHLNRNHRESPNSMCTSPTYISRTSDGGKHPTENGTNACDICEKNDFRNELDLIAHKRTMHQVKPTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEDQFHQHLLKHCNPANANGGQVAFPTSCIICRQTLVSDIEVKVHVHYHLSRLKESPAVCGNCNRYKRSASSPCAGCNPARNSAAERCPDCGAAFDAFGTLQHHLTTVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGIECGLCPCVLPTANSLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMTVDHSAETPPYDCPRPGCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSICEKLSFKCAECYQSFLTQADLQCHVYDHHRPQKDAPLPEPIDVKQEMSGVNGNAETRPLDGCERSENPIKVEEDGDEVSVKTEHRERDDDDDEEMIDVGENNRDELKSGEEEDDADMH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00469118;
90% Identity: iTF_01305039;
80% Identity: -