Basic Information

Insect: Rhopalosiphum maidis
Gene Symbol: L
Assembly: GCA_003676215.3
Location: NC:88597711-88713639[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 2.3e-06 0.00016 21.3 1.2 1 23 167 189 167 189 0.98

2 22 1.2 89 3.3 7.0 1 23 195 217 195 217 0.97

3 22 5.1e-07 3.6e-05 23.4 5.6 1 23 223 245 223 245 0.99

4 22 6.4e-06 0.00045 19.9 0.9 1 23 251 273 251 274 0.96

5 22 9.5e-05 0.0068 16.2 2.0 1 23 291 313 291 314 0.96

6 22 0.0052 0.37 10.8 0.7 1 23 338 361 338 361 0.97

7 22 1.5 1.1e+02 3.0 1.0 1 23 399 422 399 422 0.94

8 22 0.003 0.22 11.5 2.1 2 23 611 632 610 632 0.94

9 22 0.0001 0.0074 16.1 1.5 1 23 640 663 640 663 0.96

10 22 0.00012 0.0084 15.9 0.6 1 23 668 691 668 691 0.95

11 22 0.00047 0.033 14.1 0.8 2 23 741 762 740 762 0.96

12 22 0.059 4.2 7.4 3.6 1 23 766 788 766 789 0.96

13 22 0.76 54 4.0 0.2 3 23 833 855 832 855 0.86

14 22 0.00086 0.061 13.2 4.6 2 23 869 890 868 890 0.96

15 22 0.0019 0.14 12.1 0.3 1 23 900 922 900 922 0.98

16 22 0.49 35 4.6 2.9 2 23 930 951 929 951 0.96

17 22 0.002 0.14 12.1 0.1 2 23 1026 1048 1026 1048 0.97

18 22 0.098 7 6.7 1.3 1 23 1052 1074 1052 1074 0.97

19 22 0.051 3.6 7.6 0.1 2 23 1086 1107 1085 1107 0.95

20 22 0.0058 0.42 10.6 0.0 1 23 1115 1138 1115 1138 0.96

21 22 0.41 29 4.8 0.2 1 23 1145 1169 1145 1169 0.94

22 22 4.8 3.4e+02 1.4 3.4 1 22 1196 1217 1196 1219 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	2.3e-06	0.00016	21.3	1.2	1	23	167	189	167	189	0.98
2	22	1.2	89	3.3	7.0	1	23	195	217	195	217	0.97
3	22	5.1e-07	3.6e-05	23.4	5.6	1	23	223	245	223	245	0.99
4	22	6.4e-06	0.00045	19.9	0.9	1	23	251	273	251	274	0.96
5	22	9.5e-05	0.0068	16.2	2.0	1	23	291	313	291	314	0.96
6	22	0.0052	0.37	10.8	0.7	1	23	338	361	338	361	0.97
7	22	1.5	1.1e+02	3.0	1.0	1	23	399	422	399	422	0.94
8	22	0.003	0.22	11.5	2.1	2	23	611	632	610	632	0.94
9	22	0.0001	0.0074	16.1	1.5	1	23	640	663	640	663	0.96
10	22	0.00012	0.0084	15.9	0.6	1	23	668	691	668	691	0.95
11	22	0.00047	0.033	14.1	0.8	2	23	741	762	740	762	0.96
12	22	0.059	4.2	7.4	3.6	1	23	766	788	766	789	0.96
13	22	0.76	54	4.0	0.2	3	23	833	855	832	855	0.86
14	22	0.00086	0.061	13.2	4.6	2	23	869	890	868	890	0.96
15	22	0.0019	0.14	12.1	0.3	1	23	900	922	900	922	0.98
16	22	0.49	35	4.6	2.9	2	23	930	951	929	951	0.96
17	22	0.002	0.14	12.1	0.1	2	23	1026	1048	1026	1048	0.97
18	22	0.098	7	6.7	1.3	1	23	1052	1074	1052	1074	0.97
19	22	0.051	3.6	7.6	0.1	2	23	1086	1107	1085	1107	0.95
20	22	0.0058	0.42	10.6	0.0	1	23	1115	1138	1115	1138	0.96
21	22	0.41	29	4.8	0.2	1	23	1145	1169	1145	1169	0.94
22	22	4.8	3.4e+02	1.4	3.4	1	22	1196	1217	1196	1219	0.87

Sequence Information

Coding Sequence: ATGTCCAGGAGGAAACAGGCTACACCTCGTTCGCTCAGACatggaaATCTTGACGCAGACGAGGTACTAGACGACGAAGACCTCATGCCACCATTGTCTCCTACAGGGTCTGGAAGCACGAAAAGCGATGAAGATGAGGGAGACGAAGACGATGAGGAAGAGTGCACcgttgatgatgatgatgatgacgaagacgacgacgacgacttgCAATCGGTCAGCTCTACCGAGGGATCAAACCACAGTCTGCTTtctgAAGCATTGAGTGGCGCGGGCGAGGCGAGCACCGAAGAGGCAGCTTCGTCGTGGAGTTCGGCCGTATCGGAGGACCACACGTCGCCGGACAGCTGCGCCACGAGCAACAGCCGGCCCGGTTCCACGGTCGACCACCGACGCGATCGCCACAGCCGTCCGCCGTCGTACGCAACGGCCGGTGCCGCTGCCGCCGCTGCCGTCGCCGCTGTCACAGCCGCAGCGAACTCCACCGACGCCAACCCATACGCATGCCAATACTGCGACAAGACGTTTCCCCGAGGGAGCTATCTAAAAAAACACGAACAGACTCATGGAGAATCAATGCCGTTCAAGTGTCAATTCTGCCGGAGGCTGTTCAAACACAAGCGCAGCCGAGACCGGCACGTGAAATTACACACGGGGGACAAGAAGTACAAGTGTACTCAATGTGACCATGCTTTTTCAAGGAGCGATCACCTGAAGATCCACATGAAAACGCACGACAATCAAAAACCGTTCCAGTGTACGGTTTGCAACAGAGGTTACAGCACGGCGGCCGCGCTCACGTCGCACATGCAGAACCATCACAAACGGGCTGCGGAACGGGCAAACTCGCCGCAGATATCCGGTCCCTCGTACAAGTGTCTGCAGTGCACGCAGATATTCCGCAAACCCGACGAGCTTCAGAATCACACTGCGACGCATCATCTCGGCGAACAACTGTCGTCCAACTCCCGGAGCTCGAAACGTTCGACGCCGCCGAAAACGCCCAACCAGTACATTTGCATGTACTGCACCAAAGAAGTGTCCAGCATGGACGCGCTGCAACAACACTTCCAGACCAAACACTCCGCGATCGTCAACGGCAAGCCGCAAGAGGACGTCTTCTCGGCCGTACCGCCGGCAGCTGCGTTCCCTTGGCTCAACTTTGCCGACTCGCCGGCCCTTGCCCTGCCACCGTACTCGTGCCGGTTGTGCATGAACCAATTCCCGTCCGTCACATCGTTACAAAAACACTTTACGACCGCCCACTATCTGAGTTCCGTCCTCAACAACAACATACAGAAcaccaacaacaacaacaataacagcaacagcaacaacaacaacaccaACGGCTGCAAAGGCGGAGCCGGTGCGATGCCCTTGTACAACTGGCCGATAATAACCGGAGCGAACGGATACCATAACCACAACCACCACCAGCGGCACTCGACGTCGGGCGGCGGTCTGTTGCCCGAGGAAACCGTTCAGACGGGTCCCACGGACTTGTCGCTGTCGTCGTCCAAGCACGGCGGCGGCAAGCACCATCACTCGTCGTCGTCGGGCAAGCACAAGTCGGCCGACGACCAGCGGCACCACGCGACCAGCAAAAAATCCCGTTCGTCGCCCAGCCGCGATCCGTCGGCGACTGACCAGCGTCAAATAAAACAGGAACGCCACAACGCTTACGACAGCAAACACCAGCAACCGCAGCCGGCCCCAGCACGACCGTCATCGCAGATATCCGGCGTCCCcggcaacaacaacaacaataacaacaacaacaataacaacaacaacgtcATTCACGCCAACAACAACAAGATCCAATTGCCGTGTCCGCACTGCCATCTGACTTTCGCGCACTTCGAAGACTACCAGCAGCACGTCATCGGCCACTTTCTCATGGCCGCCGCCGAGTACTCGTGCCAAGAGTGTTCCACATCGTTCGCCACGTCCGAACACGTGCAGAAACATCTGATGGAAACGCACGCGCAGAACTTTTACCGGTGCATGCTGTGCAAAGAAGTGTTCCCGACCAAGTCGGCCCTGAAGGTGCACTTCAGCATGAACCACGGCAGCGAACATCGAATGTTCCGCTGCAACAACTGCACGGGACTGTCCCGGCCGCTGTTCCAGACGGAAATCGAGTTCATCGATCACCTGCGCAACGCCCATTACTCCGCGAGATCACCACCGCCAGTCCAACCGAACTTGATGCTCAGGTGTTTGGTATGCCACGCTACGTTCAACACGCAGTCCGATATGGAACAACATTTAGCTAGTCACTCCAAACAATTCCAATGCCAATTTTGTTCGGAAGCGTTCCATATAGAGTTCTTGTTGGACAGACACATACAAACGCATCACAGTTCGAGCATTTTAAGTCACCTCAACCGGAACCACAGGGAATCGCCAAATTCCATGTGTACGTCGCCCACGTACATTTCCAGGACGGCGGACGGCGGTAAGCATCAGACGGAAAACGGCACGAACGCGTGTGATATATGCGAGAAAAATGATTTTCGAAACGAATTGGACTTGATTGCCCACAAAAGAACGATGCACCAGGTGAAACCTACAAATCTTTCTACAAAGGTGAGCTTACATTGCGCATATTGTAACGAAAACTGCAAATCGAGAACGGAGTTGGAGAACCACATGAAGACGCATTCACAACACGGTTCGAACGTCGGAAAACACAAGTGCAACATTTGTGACGAAATTTATCAGTCCGCGATCAGCTTAGCCGAACACAAACTCACTCATTGcaagGTAGCCACGAGTACCGTGTGTAGTCACTGCAAAATGATTATTGACAACGAGGACCAGTTCCATCAACACCTCCTGAAGCACTGCAATCCGGCGAACGCGAACGGCGGCCAAGTGGCGTTCCCCACGTCGTGCATAATATGCAGGCAAACGCTCGTCTCAGACATCGAAGTGAAGGTGCACGTGCACTATCACCTGTCCCGGCTCAAAGAATCTCCGGCCGTGTGCGGTAACTGTAACCGGTACAAGCGGTCAGCGTCGTCGCCGTGCGCCGGCTGCAACCCGACCAGAAACAGTGCGGCGGAACGATGTCCCGACTGCGGTGCGGCGTTCGACGCTTTCGGCGCGCTGCAACACCACCTGACCACCGTCCACAGGAAACCGTTTCACTGTTTCAAGTGCAAGATCGGGTTCGAGTCGCAACAGGAAGCCACGATCCACTTGGGCACGCACCTGGCCACGCTCAACGGTTCCGTGGACGGCATCGAGTGCGGCCTGTGCCCGTGCGTGCTGCCCACGGCCAACAGTCTCCAGACGCACCTGATCGAGCACACGTTCGCCGGCTGCAAGGCGTTCACGTGCTACCTGTGCTCGGCCATATTCACCGCGCCTACCGGCCTACAGGCGCACATGACCGTCGACCACTCGGCCGAAACGCCGCCGTACGACTGCCCCAGGCCCGGGTGCCAGGCCAAGTTCTTCTTCACCGCCGAGCTCGACCGGCACACGCTCGAGCACCAGGGACAAGACGTCCTGGCCAACATGAATTTCTACAAGTACCAAAACAAGCTTATGTCTATCTGCGAAAAACTGTCGTTCAAGTGCGCTGAGTGCTATCAGAGCTTCTTGACACAAGCCGACTTACAGTGTCACGTGTACGACCACCATCGGCCACAGAAAGACGCACCGCCGCCAGAACCGATAGACGTCAAACAAGAAATGAGCGGTATTAACGGTAACGCGGAAACGCGGGCTTCGGACGGATGCGAACGGCCCGAGAACCCAATCAAAGTGGAGGAAGATGGGGACGAGGTGAGCGTGAAAACGGAGCACCGCGAAaaagacgacgacgacgacgacgaagagATGATTGACGTGGGAGAGAACAACCGCGATGAGCTGAAGTCGGGCGAAGACGAAGACGACGCGGATATGCGTTGA
Protein Sequence: MSRRKQATPRSLRHGNLDADEVLDDEDLMPPLSPTGSGSTKSDEDEGDEDDEEECTVDDDDDDEDDDDDLQSVSSTEGSNHSLLSEALSGAGEASTEEAASSWSSAVSEDHTSPDSCATSNSRPGSTVDHRRDRHSRPPSYATAGAAAAAAVAAVTAAANSTDANPYACQYCDKTFPRGSYLKKHEQTHGESMPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERANSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQLSSNSRSSKRSTPPKTPNQYICMYCTKEVSSMDALQQHFQTKHSAIVNGKPQEDVFSAVPPAAAFPWLNFADSPALALPPYSCRLCMNQFPSVTSLQKHFTTAHYLSSVLNNNIQNTNNNNNNSNSNNNNTNGCKGGAGAMPLYNWPIITGANGYHNHNHHQRHSTSGGGLLPEETVQTGPTDLSLSSSKHGGGKHHHSSSSGKHKSADDQRHHATSKKSRSSPSRDPSATDQRQIKQERHNAYDSKHQQPQPAPARPSSQISGVPGNNNNNNNNNNNNNNVIHANNNKIQLPCPHCHLTFAHFEDYQQHVIGHFLMAAAEYSCQECSTSFATSEHVQKHLMETHAQNFYRCMLCKEVFPTKSALKVHFSMNHGSEHRMFRCNNCTGLSRPLFQTEIEFIDHLRNAHYSARSPPPVQPNLMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSSILSHLNRNHRESPNSMCTSPTYISRTADGGKHQTENGTNACDICEKNDFRNELDLIAHKRTMHQVKPTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQHGSNVGKHKCNICDEIYQSAISLAEHKLTHCKVATSTVCSHCKMIIDNEDQFHQHLLKHCNPANANGGQVAFPTSCIICRQTLVSDIEVKVHVHYHLSRLKESPAVCGNCNRYKRSASSPCAGCNPTRNSAAERCPDCGAAFDAFGALQHHLTTVHRKPFHCFKCKIGFESQQEATIHLGTHLATLNGSVDGIECGLCPCVLPTANSLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMTVDHSAETPPYDCPRPGCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNKLMSICEKLSFKCAECYQSFLTQADLQCHVYDHHRPQKDAPPPEPIDVKQEMSGINGNAETRASDGCERPENPIKVEEDGDEVSVKTEHREKDDDDDDEEMIDVGENNRDELKSGEDEDDADMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00469118;
90% Identity: iTF_01305039;
80% Identity: -